Publications IPMB

ZORA Publication List

Publications

• 2017

  • Stegmann, Martin; Zipfel, Cyril (2017). Complex regulation of plant sex by peptides. Science, 358(6370):1544-1545.
  • Wicker, Thomas; Schulman, Alan H; Tanskanen, Jaakko; Spannagl, Manuel; Twardziok, Sven; Mascher, Martin; Springer, Nathan M; Li, Qing; Waugh, Robbie; Li, Chengdao; Zhang, Guoping; Stein, Nils; Mayer, Klaus F. X; Gundlach, Heidrun (2017). The repetitive landscape of the 5100 Mbp barley genome. Mobile DNA:8:22.
  • Gordon, Sean P; Contreras-Moreira, Bruno; Woods, Daniel P; Des Marais, David L; Burgess, Diane; Shu, Shengqiang; Stritt, Christoph; Roulin, Anne C; Schackwitz, Wendy; Tyler, Ludmila; Martin, Joel; Lipzen, Anna; Dochy, Niklas; Phillips, Jeremy; Barry, Kerrie; Geuten, Koen; Budak, Hikmet; Juenger, Thomas E; Amasino, Richard; Caicedo, Ana L; Goodstein, David; Davidson, Patrick; Mur, Luis A J; Figueroa, Melania; Freeling, Michael; Catalan, Pilar; Vogel, John P (2017). Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nature Communications, 8(1):2184.
  • Lardi, Martina; Liu, Yilei; Purtschert, Gabriela; Bolzan de Campos, Samanta; Pessi, Gabriella (2017). Transcriptome Analysis of Paraburkholderia phymatum under Nitrogen Starvation and during Symbiosis with Phaseolus Vulgaris. Genes, 8(12):E389.
  • Praz, Coraline R; Bourras, Salim; Zeng, Fansong; Sánchez-Martín, Javier; Menardo, Fabrizio; Xue, Minfeng; Yang, Lijun; Roffler, Stefan; Böni, Rainer; Herren, Gerard; McNally, Kaitlin E; Ben-David, Roi; Parlange, Francis; Oberhaensli, Simone; Flückiger, Simon; Schäfer, Luisa K; Wicker, Thomas; Yu, Dazhao; Keller, Beat (2017). AvrPm2 encodes an RNase-like avirulence effector which is conserved in the two different specialized forms of wheat and rye powdery mildew fungus. New Phytologist, 213(3):1301-1314.
  • Christ, Bastien; Hochstrasser, Ramon; Guyer, Luzia; Francisco, Rita; Aubry, Sylvain; Hörtensteiner, Stefan; Weng, Jing-Ke (2017). Non-specific activities of the major herbicide-resistance gene BAR. Nature Plants, 3(12):937-945.
  • Luo, Ming-Cheng; Gu, Yong Q; et al; Wicker, Thomas; Dvořák, Jan (2017). Genome sequence of the progenitor of the wheat D genome Aegilops tauschii. Nature:498-502.
  • Higgins, Steven; Sanchez-Contreras, Maria; Gualdi, Stefano; Pinto-Carbó, Marta; Carlier, Aurélien; Eberl, Leo (2017). The Essential Genome of Burkholderia cenocepacia H111. Journal of Bacteriology, 199(22):e00260-17.
  • Ruinelli, Michela. Genomic Investigations of Members of the Pseudomonas syringae Species Complex Associated with Prunus spp. and Kiwifruit. 2017, University of Zurich, Faculty of Science.
  • Menardo, Fabrizio; Praz, Coraline R; Wicker, Thomas; Keller, Beat (2017). Rapid turnover of effectors in grass powdery mildew (Blumeria graminis). BMC Evolutionary Biology, 17(1):223.
  • Ndinyanka Fabrice, Tohnyui; Kaech, Andres; Barmettler, Gery; Eichenberger, Christof; Knox, J Paul; Grossniklaus, Ueli; Ringli, Christoph (2017). Efficient preparation of Arabidopsis pollen tubes for ultrastructural analysis using chemical and cryo-fixation. BMC Plant Biology, 17:176.
  • Park, Jiyoung; Lee, Youngsook; Martinoia, Enrico; Geisler, Markus (2017). Plant hormone transporters: what we know and what we would like to know. BMC Biology, 15(1):93.
  • Yankova, Yana; Neuenschwander, Stefan; Köster, Oliver; Posch, Thomas (2017). Abrupt stop of deep water turnover with lake warming: Drastic consequences for algal primary producers. Scientific Reports, 7(1):13770.
  • Bowman, John L; Kohchi, Takayuki; Yamato, Katsuyuki T; Jenkins, Jerry; Shu, Shengqiang; Ishizaki, Kimitsune; Yamaoka, Shohei; Nishihama, Ryuichi; Nakamura, Yasukazu; Berger, Frédéric; Adam, Catherine; Aki, Shiori Sugamata; Althoff, Felix; Araki, Takashi; Arteaga-Vazquez, Mario A; Balasubrmanian, Sureshkumar; Barry, Kerrie; Bauer, Diane; Boehm, Christian R; Briginshaw, Liam; Caballero-Perez, Juan; Catarino, Bruno; Chen, Feng; Chiyoda, Shota; Chovatia, Mansi; Davies, Kevin M; Delmans, Mihails; Demura, Taku; Dierschke, Tom; Dolan, Liam; Rövekamp, Moritz; Schmid, Marc W; et al (2017). Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell, 171(2):287-304.
  • Yang, Ping; Herren, Gerhard; Krattinger, Simon; Keller, Beat (2017). Large-scale maize seedling infection with exserohilum turcicum in the greenhouse. Bio-protocol, 7(19):e2567.
  • Gujas, Bojan; Cruz, Tiago M D; Kastanaki, Elizabeth; Vermeer, Joop E M; Munnik, Teun; Rodriguez-Villalon, Antia (2017). Perturbing phosphoinositide homeostasis oppositely affects vascular differentiation in Arabidopsis thaliana roots. Development, 144(19):3578-3589.
  • D’Ambrosio, Juan Martín; Couto, Daniel; Fabro, Georgina; Scuffi, Denise; Lamattina, Lorenzo; Munnik, Teun; Andersson, Mats X; Álvarez, María E; Zipfel, Cyril; Laxalt, Ana M (2017). Phospholipase C2 Affects MAMP-Triggered Immunity by Modulating ROS Production. Plant Physiology, 175(2):970-981.
  • Eisenach, Cornelia; Baetz, Ulrike; Huck, Nicola V; Zhang, Jingbo; De Angeli, Alexis; Beckers, Gerold J M; Martinoia, Enrico (2017). ABA-induced stomatal closure involves ALMT4, a phosphorylation-dependent vacuolar anion channel of arabidopsis. Plant Cell, 29(10):2552-2569.
  • Granato, Elisa T; Kümmerli, Rolf (2017). The path to re-evolve cooperation is constrained in Pseudomonas aeruginosa. BMC Evolutionary Biology, 17(1):214.
  • Stoeckle, Dorothee; Thellmann, Martha; Vermeer, Joop E M (2017). Breakout-lateral root emergence in Arabidopsis thaliana. Current Opinion in Plant Biology, 41:67-72.
  • Pitsch, Gianna; Adamec, Lubomír; Dirren, Sebastian; Nitsche, Frank; Šimek, Karel; Sirová, Dagmara; Posch, Thomas (2017). The green tetrahymena utriculariae n. sp. (ciliophora, oligohymenophorea) with its endosymbiotic algae (micractinium sp.), living in traps of a carnivorous aquatic plant. Journal of Eukaryotic Microbiology, 64(3):322-335.
  • Boschi, Federico; Schvartzman, Claudia; Murchio, Sara; Ferreira, Virginia; Siri, Maria I; Galván, Guillermo A; Smoker, Matthew; Stransfeld, Lena; Zipfel, Cyril; Vilaró, Francisco L; Dalla-Rizza, Marco (2017). Enhanced Bacterial Wilt Resistance in Potato Through Expression of Arabidopsis EFR and Introgression of Quantitative Resistance from Solanum commersonii. Frontiers in Plant Science, 8:1642.
  • Schöneberg, Torsten. Occurrence and Epidemiology of Fusarium Species in Barley and Oats. 2017, University of Zurich, Faculty of Science.
  • Šimek, Karel; Pitsch, Gianna; Salcher, Michaela M; Sirová, Dagmara; Shabarova, Tanja; Adamec, Lubomír; Posch, Thomas (2017). Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa. Journal of Eukaryotic Microbiology, 64(3):336-348.
  • Guyer, Luzia; Salinger, Kathrin; Krügel, Undine; Hörtensteiner, Stefan (2017). Catalytic and structural properties of pheophytinase, the phytol esterase involved in chlorophyll breakdown. Journal of Experimental Botany, 69:879-889.
  • Granato, Elisa. Evolution of Cooperation and Virulence in an Opportunistic Pathogen. 2017, University of Zurich, Faculty of Science.
  • Kuai, Benke; Chen, Junyi; Hörtensteiner, Stefan (2017). The biochemistry and molecular biology of chlorophyll breakdown. Journal of Experimental Botany, 69(4):751-767.
  • Toyofuku, Masanori; Cárcamo-Oyarce, Gerardo; Yamamoto, Tatsuya; Eisenstein, Fabian; Hsiao, Chien-Chi; Kurosawa, Masaharu; Gademann, Karl; Pilhofer, Martin; Nomura, Nobuhiko; Eberl, Leo (2017). Prophage-triggered membrane vesicle formation through peptidoglycan damage in Bacillus subtilis. Nature Communications, 8:481.
  • Imkampe, Julia; Halter, Thierry; Huang, Shuhua; Schulze, Sarina; Mazzotta, Sara; Schmidt, Nikola; Manstretta, Raffaele; Postel, Sandra; Wierzba, Michael; Yang, Yong; van Dongen, Walter M A M; Stahl, Mark; Zipfel, Cyril; Goshe, Michael B; Clouse, Steven; de Vries, Sacco C; Tax, Frans; Wang, Xiaofeng; Kemmerling, Birgit (2017). The Arabidopsis Leucine-Rich Repeat Receptor Kinase BIR3 Negatively Regulates BAK1 Receptor Complex Formation and Stabilizes BAK1. Plant Cell, 29(9):2285-2303.
  • Butaitė, Elena; Baumgartner, Michael; Wyder, Stefan; Kümmerli, Rolf (2017). Siderophore cheating and cheating resistance shape competition for iron in soil and freshwater Pseudomonas communities. Nature Communications, 8(1):414.
  • Thind, Anupriya K; Wicker, Thomas; Krattinger, Simon G (2017). Rapid identification of rust resistance genes through cultivar-specific de novo chromosome assemblies. In: Periyannan, Sam. Wheat Rust Diseases. New York, NY: Springer, 245-255.
  • Do, Thanh Ha Thi; Martinoia, Enrico; Lee, Youngsook (2017). Functions of ABC transporters in plant growth and development. Current Opinion in Plant Biology, 41:32-38.
  • Boni, Rainer. Functional Characterization of the Wheat Disease Resistance Gene Lr34 in Heterologous Barley. 2017, University of Zurich, Faculty of Science.
  • Boutrot, Freddy; Zipfel, Cyril (2017). Function, Discovery, and Exploitation of Plant Pattern Recognition Receptors for Broad-Spectrum Disease Resistance. Annual Review of Phytopathology, 55:257-286.
  • Singh, Vijayata; Perraki, Artemis; Kim, Sang Y; Shrivastava, Stuti; Lee, Jae H; Zhao, Youfu; Schwessinger, Benjamin; Oh, Man-Ho; Marshall-Colon, Amy; Zipfel, Cyril; Huber, Steven C (2017). Tyrosine-610 in the Receptor Kinase BAK1 Does Not Play a Major Role in Brassinosteroid Signaling or Innate Immunity. Frontiers in Plant Science, 8:1273.
  • Dirren, Sebastian; Pitsch, Gianna; Silva, Marisa O D; Posch, Thomas (2017). Grazing of Nuclearia thermophila and Nuclearia delicatula (Nucleariidae, Opisthokonta) on the toxic cyanobacterium Planktothrix rubescens. European Journal of Protistology, 60:87-101.
  • Simonini, Sara; Bencivenga, Stefano; Trick, Martin; Østergaard, Lars (2017). Auxin-Induced Modulation of ETTIN Activity Orchestrates Gene Expression in Arabidopsis. Plant Cell, 29(8):1864-1882.
  • Fazli, Mustafa; Rybtke, Morten; Steiner, Elisabeth; Weidel, Elisabeth; Berthelsen, Jens; Groizeleau, Julie; Bin, Wu; Zhi, Boo Zhao; Yaming, Zhang; Kaever, Volkhard; Givskov, Michael; Hartmann, Rolf W; Eberl, Leo; Tolker-Nielsen, Tim (2017). Regulation of Burkholderia cenocepacia biofilm formation by RpoN and the c-di-GMP effector BerB. MicrobiologyOpen, 6(4):e00480.
  • Thalmann, Matthias. The Function and Regulation of Starch Degradation during Plant Responses to Abiotic Stress. 2017, University of Zurich, Faculty of Science.
  • Khare, Deepa; Choi, Hyunju; Huh, Sung Un; Bassin, Barbara; Kim, Jeongsik; Martinoia, Enrico; Sohn, Kee Hoon; Paek, Kyung-Hee; Lee, Youngsook (2017). Arabidopsis ABCG34 contributes to defense against necrotrophic pathogens by mediating the secretion of camalexin. Proceedings of the National Academy of Sciences of the United States of America, 114(28):E5712-E5720.
  • Agnoli, Kirsty; Freitag, Roman; Gomes, Margarida C; Jenul, Christian; Suppiger, Angela; Mannweiler, Olga; Frauenknecht, Carmen; Janser, Daniel; Vergunst, Annette C; Eberl, Leo (2017). Use of Synthetic Hybrid Strains To Determine the Role of Replicon 3 in Virulence of the Burkholderia cepacia Complex. Applied and Environmental Microbiology, 83(13):e00461-17.
  • Vermeer, Joop E M; van Wijk, Ringo; Goedhart, Joachim; Geldner, Niko; Chory, Joanne; Gadella, Theodorus W J; Munnik, Teun (2017). In Vivo Imaging of Diacylglycerol at the Cytoplasmic Leaflet of Plant Membranes. Plant & Cell Physiology, 58(7):1196-1207.
  • Weigert, Michael; Kümmerli, Rolf (2017). The physical boundaries of public goods cooperation between surface-attached bacterial cells. Proceedings of the Royal Society of London, Series B: Biological Sciences, 284(1858):20170631.
  • Eversole, Kellye; Rogers, Jane; Keller, Beat; Appels, Rudi; Feuillet, Catherine (2017). Sequencing and assembly of the wheat genome. In: Langridge, Peter. Achieving sustainable cultivation of wheat Volume 1: Breeding, quality traits, pests and diseases. Cambridge, UK: Burleigh Dodds Science Publishing, 25-52.
  • Ezer, Daphne; Jung, Jae-Hoon; Lan, Hui; Biswas, Surojit; Gregoire, Laura; Box, Mathew S; Charoensawan, Varodom; Cortijo, Sandra; Lai, Xuelei; Stöckle, Dorothee; Zubieta, Chloe; Jaeger, Katja E; Wigge, Philip A (2017). The evening complex coordinates environmental and endogenous signals in Arabidopsis. Nature Plants, 3:17087.
  • Yankova, Yana. Effects of Lake Warming on Cyanobacterial and Algal Bloom Dynamics. 2017, University of Zurich, Faculty of Science.
  • Van der Does, Dieuwertje; Boutrot, Freddy; Engelsdorf, Timo; Rhodes, Jack; McKenna, Joseph F; Vernhettes, Samantha; Koevoets, Iko; Tintor, Nico; Veerabagu, Manikandan; Miedes, Eva; Segonzac, Cécile; Roux, Milena; Breda, Alice S; Hardtke, Christian S; Molina, Antonio; Rep, Martijn; Testerink, Christa; Mouille, Grégory; Höfte, Herman; Hamann, Thorsten; Zipfel, Cyril (2017). The Arabidopsis leucine-rich repeat receptor kinase MIK2/LRR-KISS connects cell wall integrity sensing, root growth and response to abiotic and bioticstresses. PLoS Genetics, 13(6):e1006832.
  • Baumgartner, Michael; Roffler, Stefan; Wicker, Thomas; Pernthaler, Jakob (2017). Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment. The ISME journal, 11(10):2258-2266.
  • Hu, Chengzhi; Zhang, Qi; Meyer, Tobias; Vogler, Hannes; Burri, Jan T; Shamsudhin, Naveen; Grossniklaus, Ueli; Nelson, Bradley J (2017). In vivo tracking and measurement of pollen tube vesicle motion. In: 2017 IEEE International Conference on Robotics and Automation (ICRA), Singapore, 29 May 2017 - 3 June 2017. IEEE, 3575-3580.
  • Santelia, Diana; Lunn, John E (2017). Transitory starch metabolism in guard cells: unique features for a unique function. Plant Physiology, 174(2):539-549.
  • Kang, Joohyun; Lee, Youngsook; Sakakibara, Hitoshi; Martinoia, Enrico (2017). Cytokinin transporters: GO and STOP in signaling. Trends in Plant Science, 22(6):455-461.
  • Toyofuku, Masanori; Morinaga, Kana; Hashimoto, Yohei; Uhl, Jenny; Shimamura, Hiroko; Inaba, Hideki; Schmitt-Kopplin, Philippe; Eberl, Leo; Nomura, Nobuhiko (2017). Membrane vesicle-mediated bacterial communication. The ISME journal, 11(6):1504-1509.
  • Ndinyanka Fabrice, Tohnyui. An Integrated Systems Understanding of the Dynamic Interplay between Plant Cell Growth and Pollen Tube Cell Wall Development. 2017, University of Zurich, Faculty of Science.
  • Nadal, Marina; Sawers, Ruairidh; Naseem, Shamoon; Bassin, Barbara; Kulicke, Corinna; Sharman, Abigail; An, Gynheung; An, Kyungsook; Ahern, Kevin R; Romag, Amanda; Brutnell, Thomas P; Gutjahr, Caroline; Geldner, Niko; Roux, Christophe; Martinoia, Enrico; Konopka, James B; Paszkowski, Uta (2017). An N-acetylglucosamine transporter required for arbuscular mycorrhizal symbioses in rice and maize. Nature Plants, 3:17073.
  • Pernthaler, Jakob (2017). Competition and niche separation of pelagic bacteria in freshwater habitats. Environmental Microbiology, 19(6):2133-2150.
  • Thind, Anupriya Kaur; Wicker, Thomas; Šimková, Hana; Fossati, Dario; Moullet, Odile; Brabant, Cécile; Vrána, Jan; Doležel, Jaroslav; Krattinger, Simon G (2017). Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly. Nature Biotechnology, 35(8):793-796.
  • Nguyen, Chi Tam; Martinoia, Enrico; Farmer, Edward E (2017). Emerging jasmonate transporters. Molecular Plant, 10(5):659-661.
  • Thalmann, Matthias; Santelia, Diana (2017). Starch as a determinant of plant fitness under abiotic stress. New Phytologist, 214(3):943-951.
  • Schmid, Nadine; Suppiger, Angela; Steiner, Elisabeth; Pessi, Gabriella; Kaever, Volkhard; Fazli, Mustafa; Tolker-Nielsen, Tim; Jenal, Urs; Eberl, Leo (2017). High intracellular c-di-GMP levels antagonize quorum sensing and virulence gene expression in Burkholderia cenocepacia H111. Microbiology, 163(5):754-764.
  • Mascher, Martin; Gundlach, Heidrun; et al; Wicker, Thomas; Stein, Nils (2017). A chromosome conformation capture ordered sequence of the barley genome. Nature, 544(7651):427-433.
  • Keller, Beat; Krattinger, Simon G (2017). Plant science: Genomic compartments in barley. Nature, 544(7651):424-425.
  • Schnippenkoetter, Wendelin; Lo, Clive; Liu, Guoquan; Dibley, Katherine; Chan, Wai Lung; White, Jodie; Milne, Ricky; Zwart, Alexander; Kwong, Eunjung; Keller, Beat; Godwin, Ian; Krattinger, Simon G; Lagudah, Evans (2017). The wheat Lr34 multipathogen resistance gene confers resistance to anthracnose and rust in sorghum. Plant Biotechnology Journal, 15(11):1387-1396.
  • Mendy, Badou; Wang’ombe, Mary Wanjiku; Radakovic, Zoran S; Holbein, Julia; Ilyas, Muhammad; Chopra, Divykriti; Holton, Nick; Zipfel, Cyril; Grundler, Florian M W; Siddique, Shahid (2017). Arabidopsis leucine-rich repeat receptor–like kinase NILR1 is required for induction of innate immunity to parasitic nematodes. PLoS Pathogens, 13(4):e1006284.
  • Bucher, Rahel; Veyel, Daniel; Willmitzer, Lothar; Krattinger, Simon G; Keller, Beat; Bigler, Laurent (2017). Combined GC- and UHPLC-HR-MS based metabolomics to analyze durable anti-fungal resistance processes in cereals. CHIMIA International Journal for Chemistry, 71(4):156-159.
  • Souza, Clarice de Azevedo; Li, Shundai; Lin, Andrew Z; Boutrot, Freddy; Grossmann, Guido; Zipfel, Cyril; Somerville, Shauna C (2017). Cellulose-Derived Oligomers Act as Damage-Associated Molecular Patterns and Trigger Defense-Like Responses. Plant Physiology, 173(4):2383-2398.
  • Sucher, Justine; Boni, Rainer; Yang, Ping; Rogowsky, Peter; Büchner, Heike; Kastner, Christine; Kumlehn, Jochen; Krattinger, Simon G; Keller, Beat (2017). The durable wheat disease resistance gene Lr34 confers common rust and northern corn leaf blight resistance in maize. Plant Biotechnology Journal, 15(4):489-496.
  • Feehan, Joanna M; Scheibel, Katherine E; Bourras, Salim; Underwood, William; Keller, Beat; Somerville, Shauna C (2017). Purification of high molecular weight genomic DNA from powdery mildew for long-read sequencing. Journal of Visualized Experiments, (121):online.
  • Imperiali, Nicola; Dennert, Francesca; Schneider, Jana; Laessle, Titouan; Velatta, Christelle; Fesselet, Marie; Wyler, Michele; Mascher, Fabio; Mavrodi, Olga; Mavrodi, Dmitri; Maurhofer, Monika; Keel, Christoph (2017). Relationships between root pathogen resistance, abundance and expression of pseudomonas antimicrobial genes, and soil properties in representative swiss agricultural soils. Frontiers in Plant Science, 8:427.
  • Hyles, J; Vautrin, S; Pettolino, F; MacMillan, C; Stachurski, Z; Breen, J; Berges, H; Wicker, T; Spielmeyer, W (2017). Repeat-length variation in a wheat cellulose synthase-like gene is associated with altered tiller number and stem cell wall composition. Journal of Experimental Botany, 68(7):1519-1529.
  • Grossmann, Jonas; Fernández, Helena; Chaubey, Pururawa M; Valdés, Ana E; Gagliardini, Valeria; Cañal, María J; Russo, Giancarlo; Grossniklaus, Ueli (2017). Proteogenomic analysis greatly expands the identification of proteins related to reproduction in the apogamous fern dryopteris affinis ssp. affinis. Frontiers in Plant Science, 8:336.
  • Zipfel, Cyril; Oldroyd, Giles E D (2017). Plant signalling in symbiosis and immunity. Nature, 543(7645):328-336.
  • Bender, Kyle W; Blackburn, R Kevin; Monaghan, Jacqueline; Derbyshire, Paul; Menke, Frank L H; Zipfel, Cyril; Goshe, Michael B; Zielinski, Raymond E; Huber, Steven C (2017). Autophosphorylation-based Calcium (Ca2+) Sensitivity Priming and Ca2+/Calmodulin Inhibition of Arabidopsis thaliana Ca2+-dependent Protein Kinase 28 (CPK28). Journal of Biological Chemistry, 292(10):3988-4002.
  • Rinaldo, Amy; Gilbert, Brian; Boni, Rainer; Krattinger, Simon G; Singh, Davinder; Park, Robert F; Lagudah, Evans; Ayliffe, Michael (2017). The Lr34 adult plant rust resistance gene provides seedling resistance in durum wheat without senescence. Plant Biotechnology Journal, 15(7):894-905.
  • Bücherl, Christoph A; Jarsch, Iris K; Schudoma, Christian; Segonzac, Cécile; Mbengue, Malick; Robatzek, Silke; MacLean, Daniel; Ott, Thomas; Zipfel, Cyril (2017). Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains. eLife, 6:e25114.
  • Shabarova, Tanja; Kasalický, Vojtěch; Šimek, Karel; Nedoma, Jiří; Znachor, Petr; Posch, Thomas; Pernthaler, Jakob; Salcher, Michaela M (2017). Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology, 19(3):1296-1309.
  • Krattinger, Simon G; Keller, Beat (2017). Resistance: Double gain with one gene. Nature Plants, 3:17019.
  • Kuhn, Benjamin M; Nodzyński, Tomasz; Errafi, Sanae; Bucher, Rahel; Gupta, Shibu; Aryal, Bibek; Dobrev, Petre; Bigler, Laurent; Geisler, Markus; Zažímalová, Eva; Friml, Jiří; Ringli, Christoph (2017). Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity. Scientific Reports, 7:41906.
  • Menardo, Fabrizio; Wicker, Thomas; Keller, Beat (2017). Reconstructing the evolutionary history of powdery mildew lineages (Blumeria graminis) at different evolutionary time scales with NGS data. Genome Biology and Evolution, 9(2):446-456.
  • Shubchynskyy, Volodymyr; Boniecka, Justyna; Schweighofer, Alois; Simulis, Justinas; Kvederaviciute, Kotryna; Stumpe, Michael; Mauch, Felix; Balazadeh, Salma; Mueller-Roeber, Bernd; Boutrot, Freddy; Zipfel, Cyril; Meskiene, Irute (2017). Protein phosphatase AP2C1 negatively regulates basal resistance and defense responses to Pseudomonas syringae. Journal of Experimental Botany, 68(5):1169-1183.
  • Zhang, Jie; Hwang, Jae-Ung; Song, Won-Yong; Martinoia, Enrico; Lee, Youngsook (2017). Identification of amino acid residues important for the arsenic resistance function of Arabidopsis ABCC1. FEBS letters, 591(4):656-666.
  • Khare, Deepa; Mitsuda, Nobukata; Lee, Seungchul; Song, Won-Yong; Hwang, Daehee; Ohme-Takagi, Masaru; Martinoia, Enrico; Lee, Youngsook; Hwang, Jae-Ung (2017). Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytologist, 213(3):1257-1273.
  • Sucher, Justine. Study of the wheat resistance gene Lr34 after its transfer into heterologous crop species. 2017, University of Zurich, Faculty of Science.
  • Stegmann, Martin; Monaghan, Jacqueline; Smakowska-Luzan, Elwira; Rovenich, Hanna; Lehner, Anita; Holton, Nicholas; Belkhadir, Youssef; Zipfel, Cyril (2017). The receptor kinase FER is a RALF-regulated scaffold controlling plant immune signaling. Science, 355(6322):287-289.
  • Carlier, Aurelien; Cnockaert, Margo; Fehr, Linda; Vandamme, Peter; Eberl, Leo (2017). Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis. Systematic and Applied Microbiology, 40(1):11-21.
  • Weigert, Michael; Ross-Gillespie, Adin; Leinweber, Anne; Pessi, Gabriella; Brown, Sam P; Kümmerli, Rolf (2017). Manipulating virulence factor availability can have complex consequences for infections. Evolutionary Applications, 10(1):91-101.
  • Strullu-Derrien, Christine; Spencer, Alan R T; Goral, Tomasz; Dee, Jaclyn; Honegger, Rosmarie; Kenrick, Paul; Longcore, Joyce E; Berbee, Mary L (2017). New insights into the evolutionary history of Fungi from a 407 Ma Blastocladiomycota fossil showing a complex hyphal thallus. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 373(1739):20160502.
  • Honegger, Rosmarie; Edwards, Dianne; Axe, Lindsey; Strullu-Derrien, Christine (2017). Fertile Prototaxites taiti: a basal ascomycete with inoperculate, polysporous asci lacking croziers. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 373(1739):20170146.
  • Hauenstein, Mareike; Hörtensteiner, Stefan (2017). Isolation and detection of the chlorophyll catabolite hydroxylating activity from capsicum annuum chromoplasts. Bio-protocol, 7(18):e2561.
  • McNally, Kaitlin. Molecular and evolutionary studies of race-specific avirulence factors from wheat powdery mildew (Blumeria graminis f. sp. tritici). 2017, University of Zurich, Faculty of Science.
  • Butaitė, Elena. Pyoverdine production and its social effects in natural communities of Pseudomonas bacteria. 2017, University of Zurich, Faculty of Science.
  • Bailly, Aurélien; Weisskopf, Laure (2017). Mining the Volatilomes of Plant-Associated Microbiota for New Biocontrol Solutions. Frontiers in Microbiology:8:1638.
  • Lardi, Martina; de Campos, Samanta Bolzan; Purtschert, Gabriela; Eberl, Leo; Pessi, Gabriella (2017). Competition Experiments for Legume Infection Identify Burkholderia phymatum as a Highly Competitive β-Rhizobium. Frontiers in Microbiology, 8:1527.
  • de Campos, Samanta Bolzan; Lardi, Martina; Gandolfi, Alessia; Eberl, Leo; Pessi, Gabriella (2017). Mutations in Two Paraburkholderia phymatum Type VI Secretion Systems Cause Reduced Fitness in Interbacterial Competition. Frontiers in Microbiology:8:2473.
  • Alfreider, Albin; Baumer, Andreas; Bogensperger, Teresa; Posch, Thomas; Salcher, Michaela M; Summerer, Monika (2017). CO2 assimilation strategies in stratified lakes: Diversity and distribution patterns of chemolithoautotrophs. Environmental Microbiology, 19(7):2754-2768.
  • Kotliński, Maciej; Knizewski, Lukasz; Muszewska, Anna; Rutowicz, Kinga; Lirski, Maciej; Schmidt, Anja; Baroux, Célia; Ginalski, Krzysztof; Jerzmanowski, Andrzej (2017). Phylogeny-based systematization of arabidopsis proteins with histone H1 globular domain. Plant Physiology, 174(1):27-34.
  • Vogiatzaki, Evangelia; Baroux, Célia; Jung, Ji-Yul; Poirier, Yves (2017). PHO1 exports phosphate from the chalazal seed coat to the embryo in developing arabidopsis seeds. Current Biology, 27(19):2893-2900.
  • She, Wenjing; Baroux, Célia; Grossniklaus, Ueli (2017). Cell-type specific chromatin analysis in whole-mount plant tissues by immunostaining. In: Bemer, Marian; Baroux, Célia. Plant Chromatin Dynamics. New York: Springer, 443-454.
  • Pires, Nuno D; Grossniklaus, Ueli (2017). Identification of parent-of-origin-dependent QTLs using bulk-segregant sequencing (Bulk-Seq). In: Bemer, Marian; Baroux, Célia. Plant Chromatin Dynamics. New York: Springer, 361-371.
  • Vogler, Hannes; Grossniklaus, Ueli; Hedhly, Afif (2017). An introduction to male germline development. In: Schmidt, Anja. Plant Germline Development. New York: Springer, 3-15.
  • Vogler, Hannes; Shamsudhin, Naveen; Nelson, Bradley J; Grossniklaus, Ueli (2017). Measuring cytomechanical forces on growing pollen tubes. In: Kovalchuk, I. Pollen tip growth : from biophysical aspects to systems biology. New York: Springer, 65-85.
  • Grob, Stefan; Grossniklaus, Ueli (2017). Chromatin Conformation Capture-Based Analysis of Nuclear Architecture. In: Kovalchuk, I. Plant Epigenetics. Boston, MA: Springer, 15-32.
  • Sasheva, Pavlina; Grossniklaus, Ueli (2017). Differentially methylated region-representational difference analysis (DMR-RDA): a powerful method to identify DMRs in uncharacterized genomes. In: Kovalchuk, I. Plant Epigenetics. Boston, MA: Springer, 113-125.
  • You, Wanhui; Pien, Stéphane; Grossniklaus, Ueli (2017). Chromatin Immunoprecipitation Protocol for Histone Modifications and Protein-DNA binding analyses in arabidopsis. In: Kovalchuk, I. Plant Epigenetics. Boston, MA: Springer, 1-13.
  • Grob, Stefan; Grossniklaus, Ueli (2017). Chromosome conformation capture-based studies reveal novel features of plant nuclear architecture. Current Opinion in Plant Biology, 36:149-157.
  • Mecchia, Martin A; Santos-Fernandez, Gorka; Duss, Nadine N; Somoza, Sofía C; Boisson-Dernier, Aurélien; Gagliardini, Valeria; Martínez-Bernardini, Andrea; Fabrice, Tohnyui Ndinyanka; Ringli, Christoph; Muschietti, Jorge P; Grossniklaus, Ueli (2017). RALF4/19 peptides interact with LRX proteins to control pollen tube growth in Arabidopsis. Science, 358(6370):1600-1603.
  • Grossniklaus, Ueli (2017). Polyspermy produces tri-parental seeds in maize. Current Biology, 27(24):1300-1302.
  • Zhao, Xin’Ai; Bramsiepe, Jonathan; Van Durme, Matthias; Komaki, Shinichiro; Prusicki, Maria Ada; Maruyama, Daisuke; Forner, Joachim; Medzihradszky, Anna; Wijnker, Erik; Harashima, Hirofumi; Lu, You; Schmidt, Anja; Guthörl, Daniela; Logroño, Rosa Sahún; Guan, Yonsheng; Pochon, Gaetan; Grossniklaus, Ueli; Laux, Thomas; Higashiyama, Tetsuya; Lohmann, Jan U; Nowack, Moritz K; Schnittger, Arp (2017). RETINOBLASTOMA RELATED1 mediates germline entry in Arabidopsis. Science, 356:6336.
  • Hu, Chengzhi; Vogler, Hannes; Aellen, Marianne; Shamsudhin, Naveen; Jang, Bumjin; Burri, Jan T; Läubli, Nino; Grossniklaus, Ueli; Pané, Salvador; Nelson, Bradley J (2017). High precision, localized proton gradients and fluxes generated by a microelectrode device induce differential growth behaviors of pollen tubes. Lab on a chip, 17(4):671-680.
  • Leinweber, Anne; Fredrik Inglis, R; Kümmerli, Rolf (2017). Cheating fosters species co-existence in well-mixed bacterial communities. The ISME journal, 11(5):1179-1188.
  • Bouchaud, Charlene; Jacquat, Christiane; Martinoli, Danièle (2017). Landscape use and fruit cultivation in Petra (Jordan) from Early Nabataean to Byzantine times (2nd century bc–5th century ad). Vegetation History and Archaeobotany, 26(2):223-244.
  • Meier, Margrith; Suppiger, Angela; Eberl, Leo; Seeger, Stefan (2017). Functional silver-silicone-nanofilament-composite material for water disinfection. Small, 13(4):1601072.
  • Hu, Chengzhi; Munglani, Gautam; Vogler, Hannes; Ndinyanka Fabrice, Tohnyui; Shamsudhin, Naveen; Wittel, Falk K; Ringli, Christoph; Grossniklaus, Ueli; Herrmann, Hans J; Nelson, Bradley J (2017). Characterization of size-dependent mechanical properties of tip-growing cells using a lab-on-chip device. Lab on a chip, 17(1):82-90.
  • Baroux, Célia; Pecinka, Ales; Fuchs, Jörg; Kreth, Gregor; Schubert, Ingo; Grossniklaus, Ueli (2017). Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma, 126(1):115-124.
  • Qureshi, Naeela; Bariana, Harbans; Forrest, Kerrie; Hayden, Matthew; Keller, Beat; Wicker, Thomas; Faris, Justin; Salina, Elena; Bansal, Urmil (2017). Fine mapping of the chromosome 5B region carrying closely linked rust resistance genes Yr47 and Lr52 in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(3):495-504.
  • Singh, Simrat Pal; Keller, Beat; Gruissem, Wilhelm; Bhullar, Navreet K (2017). Rice NICOTIANAMINE SYNTHASE 2 expression improves dietary iron and zinc levels in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(2):283-292.
  • Singla, Jyoti; Lüthi, Linda; Wicker, Thomas; Bansal, Urmil; Krattinger, Simon G; Keller, Beat (2017). Characterization of Lr75: a partial, broad-spectrum leaf rust resistance gene in wheat. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 130(1):1-12.
  • Rellstab, C; Fischer, M C; Zoller, S; Graf, R; Tedder, Andrew; Shimizu, Kentaro K; Widmer, A; Holderegger, R; Gugerli, F (2017). Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri. Heredity, 118(2):193-201.

• 2016

  • Menardo, Fabrizio. Evolutionary Genomics of Grass Powdery Mildew (Blumeria graminis). 2016, University of Zurich, Faculty of Science.
  • Suppiger, Angela. Fatty Acid-Based Signalling in the Genus Burkholderia: Distribution, Mechanism, Cross-Linkage. 2016, University of Zurich, Faculty of Science.
  • Urfer, Matthias; Bogdanovic, Jasmina; Lo Monte, Fabio; Moehle, Kerstin; Zerbe, Katja; Omasits, Ulrich; Ahrens, Christian H; Pessi, Gabriella; Eberl, Leo; Robinson, John A (2016). A peptidomimetic antibiotic targets outer membrane proteins and disrupts selectively the outer membrane in Escherichia coli. Journal of Biological Chemistry, 291:1921-1932.
  • Sasse, Joëlle; Schlegel, Markus; Borghi, Lorenzo; Ullrich, Friederike; Lee, Miyoung; Liu, Guo-Wei; Giner, José-Luis; Kayser, Oliver; Bigler, Laurent; Martinoia, Enrico; Kretzschmar, Tobias (2016). Petunia hybrida PDR2 is involved in herbivore defense by controlling steroidal contents in trichomes. Plant, Cell & Environment, 39(12):2725-2739.
  • Granato, Elisa T; Harrison, Freya; Kümmerli, Rolf (2016). Do bacterial “virulence factors” always increase virulence? A meta-analysis of pyoverdine production in Pseudomonas aeruginosa as a test case. Frontiers in Microbiology, 7:1952.
  • Das, A. Characterization of the PAO/phyllobilin Pathway of Chlorophyll Breakdown in Grasses. 2016, University of Zurich, Faculty of Science.
  • Xin, Xiu-Fang; Nomura, Kinya; Aung, Kyaw; Velásquez, André C; Yao, Jian; Boutrot, Freddy; Chang, Jeff H; Zipfel, Cyril; He, Sheng Yang (2016). Bacteria establish an aqueous living space in plants crucial for virulence. Nature, 539(7630):524-529.
  • Dirren, Sebastian. The basal Opisthokonts Nuclearia spp. with associated bacterial symbionts: aspects of diversity and ecology. 2016, University of Zurich, Faculty of Science.
  • Sánchez-Martín, Javier; Montilla-Bascón, Gracia; Mur, Luis A J; Rubiales, Diego; Prats, Elena (2016). Compromised photosynthetic electron flow and H2O2 generation correlate with genotype-specific stomatal dysfunctions during resistance against powdery mildew in oats. Frontiers in Plant Science, 7:1660.
  • Baumgartner, M; Neu, T R; Blom, J F; Pernthaler, J (2016). Protistan predation interferes with bacterial long‐term adaptation to substrate restriction by selecting for defence morphotypes. Journal of Evolutionary Biology, 29(11):2297-2310.
  • Sánchez-Martín, Javier; Steuernagel, Burkhard; Ghosh, Sreya; Herren, Gerhard; Hurni, Severine; Adamski, Nikolai; Vrána, Jan; Kubaláková, Marie; Krattinger, Simon G; Wicker, Thomas; Doležel, Jaroslav; Keller, Beat; Wulff, Brande B H (2016). Rapid gene isolation in barley and wheat by mutant chromosome sequencing. Genome Biology, 17(1):221.
  • Simonini, Sara; Deb, Joyita; Moubayidin, Laila; Stephenson, Pauline; Valluru, Manoj; Freire-Rios, Alejandra; Sorefan, Karim; Weijers, Dolf; Friml, Jiří; Østergaard, Lars (2016). A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis. Genes and Development, 30(20):2286-2296.
  • Salcher, Michaela Maria; Šimek, Karel (2016). Isolation and cultivation of planktonic freshwater microbes is essential for a comprehensive understanding of their ecology. Aquatic Microbial Ecology, 77(3):183-196.
  • Hauenstein, Mareike; Christ, Bastien; Das, Aditi; Aubry, Sylvain; Hörtensteiner, Stefan (2016). A role for TIC55 as a hydroxylase of phyllobilins, the products of chlorophyll breakdown during plant senescence. Plant Cell, 28(10):2510-2527.
  • Hersemann, Lena. Characterization of Virulence Factors in Xanthomonas translucens pv. graminis. 2016, University of Zurich, Faculty of Science.
  • Schöneberg, Torsten; Martin, Charlotte; Wettstein, Felix E; Bucheli, Thomas D; Mascher, Fabio; Bertossa, Mario; Musa, Tomke; Keller, Beat; Vogelgsang, Susanne (2016). Fusarium and mycotoxin spectra in Swiss barley are affected by various cropping techniques. Food Additives & Contaminants. Part A, Chemistry, Analysis, Control, Exposure & Risk Assessment, 33(10):1608-1619.
  • Errafi, Sanae. Old Compounds but New Functions: Insights into Novel Modes of Action of Arabidopsis Flavonols and the Flavonol Synthase FLS1 in Modulating Cell Growth. 2016, University of Zurich, Faculty of Science.
  • Couto, Daniel; Zipfel, Cyril (2016). Regulation of pattern recognition receptor signalling in plants. Nature Reviews. Immunology, 16(9):537-552.
  • Burri, Jan T; Hu, Chengzhi; Shamsudhin, Naveen; Wang, Xueqi; Vogler, Hannes; Grossniklaus, Ueli; Nelson, Bradley J (2016). Dual-axis Cellular Force Microscope for mechanical characterization of living plant cells. In: Automation Science and Engineering (CASE), 2016 IEEE International Conference on, Fort Worth, Texas, 21 August 2016 - 25 August 2016. IEEE Xplore, 942-947.
  • Shamsudhin, Naveen; Atakan, Huseyin Baris; Laubli, Nino; Vogler, Hannes; Hu, Chengzhi; Sebastian, Abu; Grossniklaus, Ueli; Nelson, Bradley J (2016). Probing the micromechanics of the fastest growing plant cell — The pollen tube. In: Engineering in Medicine and Biology Society (EMBC), 2016 IEEE 38th Annual International Conference of the, Lake Buena Vista (Orlando), Florida USA, 16 August 2016 - 20 August 2016. IEEE Xplore, 461-464.
  • Magalhães, Diogo M; Scholte, Larissa L S; Silva, Nicholas V; Oliveira, Guilherme C; Zipfel, Cyril; Takita, Marco A; de Souza, Alessandra Alves (2016). LRR-RLK family from two Citrus species: genome-wide identification and evolutionary aspects. BMC Genomics, 17(1):623.
  • Ben-David, Roi; Parks, Ryan; Dinoor, Amos; Kosman, Evsey; Wicker, Thomas; Keller, Beat; Cowger, Christina (2016). Differentiation among blumeria graminis f. sp.tritici isolates originating from wild versus domesticated triticum species in Israel. Phytopathology, 106(8):861-870.
  • Couto, Daniel; Niebergall, Roda; Liang, Xiangxiu; Bücherl, Christoph A; Sklenar, Jan; Macho, Alberto P; Ntoukakis, Vardis; Derbyshire, Paul; Altenbach, Denise; Maclean, Dan; Robatzek, Silke; Uhrig, Joachim; Menke, Frank; Zhou, Jian-Min; Zipfel, Cyril (2016). The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1. PLoS Pathogens, 12(8):e1005811.
  • Wilson, David. Evolution of resistance to antimicrobial molecules. 2016, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Hassler, Sebastian; Jung, Benjamin; Lemke, Lilia; Novák, Ondřej; Strnad, Miroslav; Martinoia, Enrico; Neuhaus, H Ekkehard (2016). Function of the Golgi-located phosphate transporter PHT4;6 is critical for senescence-associated processes in Arabidopsis. Journal of Experimental Botany, 67(15):4671-4684.
  • Hegenauer, Volker; Fürst, Ursula; Kaiser, Bettina; Smoker, Matthew; Zipfel, Cyril; Felix, Georg; Stahl, Mark; Albert, Markus (2016). Detection of the plant parasite Cuscuta reflexa by a tomato cell surface receptor. Science, 353(6298):478-481.
  • Krattinger, Simon G; Keller, Beat (2016). Molecular genetics and evolution of disease resistance in cereals. New Phytologist, 212(2):320-332.
  • Yeh, Yu-Hung; Panzeri, Dario; Kadota, Yasuhiro; Huang, Yi-Chun; Huang, Pin-Yao; Tao, Chia-Nan; Roux, Milena; Chien, Hsiao-Chiao; Chin, Tzu-Chuan; Chu, Po-Wei; Zipfel, Cyril; Zimmerli, Laurent (2016). The Arabidopsis Malectin-Like/LRR-RLK IOS1 is Critical for BAK1-Dependent and BAK1-Independent Pattern-Triggered Immunity. Plant Cell, 28(7):1701-1721.
  • Jenul, C. The Role of Nitrosohydroxylamine Secondary Metabolites in Microbial Antagonism and Cell-Cell Communication in Burkholderia cenocepacia H111. 2016, University of Zurich, Faculty of Science.
  • Schilcher, Katrin. Antibiotic-Mediated Modulation of Staphylococcus aureus Virulence Factors. 2016, University of Zurich, Faculty of Science.
  • Borghi, Lorenzo; Liu, Guo-Wei; Emonet, Aurélia; Kretzschmar, Tobias; Martinoia, Enrico (2016). The importance of strigolactone transport regulation for symbiotic signaling and shoot branching. Planta, 243(6):1351-1360.
  • Bombarely, Aureliano; Moser, Michel; Amrad, Avichai; Bao, Manzhu; Bapaume, Laure; Barry, Cornelius S; Bliek, Mattijs; Boersma, Maaike R; Borghi, Lorenzo; Bruggmann, Rémy; Bucher, Marcel; D'Agostino, Nunzio; Davies, Kevin; Druege, Uwe; Dudareva, Natalia; Egea-Cortines, Marcos; Delledonne, Massimo; Fernandez-Pozo, Noe; Franken, Philipp; Grandont, Laurie; Heslop-Harrison, J S; Hintzsche, Jennifer; Johns, Mitrick; Koes, Ronald; Lv, Xiaodan; Lyons, Eric; Malla, Diwa; Martinoia, Enrico; Mattson, Neil S; Morel, Patrice; et al (2016). Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nature Plants, 2(6):16074.
  • Kamoun, Sophien; Zipfel, Cyril (2016). Fungal pathogenesis: Host modulation every which way. Nature Microbiology, 1(6):16075.
  • Zürcher, Evelyne. Characterization of the Arabidopsis Family of PURINE PERMEASES as Candidates for a Cytokinin Transport System. 2016, University of Zurich, Faculty of Science.
  • Pfeilmeier, Sebastian; Saur, Isabel Marie‐Luise; Rathjen, John Paul; Zipfel, Cyril; Malone, Jacob George (2016). High levels of cyclic-di-GMP in plant-associated Pseudomonas correlate with evasion of plant immunity. Molecular Plant Pathology, 17(4):521-531.
  • Roffler, Stefan. On the Impact of Transposon Activity on Genome Evolution. 2016, University of Zurich, Faculty of Science.
  • Bätz, Ulrike. Structure and Physiological Function of the Vacuolar Anion Channel ALMT9 in Arabidopsis thaliana and Vitis Vinifera. 2016, University of Zurich, Faculty of Science.
  • Saur, Isabel M L; Kadota, Yasuhiro; Sklenar, Jan; Holton, Nicholas J; Smakowska, Elwira; Belkhadir, Youssef; Zipfel, Cyril; Rathjen, John P (2016). NbCSPR underlies age-dependent immune responses to bacterial cold shock protein in Nicotiana benthamiana. Proceedings of the National Academy of Sciences of the United States of America, 113(12):3389-3394.
  • Baumgartner, Michael. Experimental Evolution of a Freshwater Isolate with Inducible Aggregate Formation – Genome Streamlining and Variability of Phenotypic Plasticity. 2016, University of Zurich, Faculty of Science.
  • Faltermann, Susanne. Cellular Uptake and Effects of Cyanobacterial Toxins in Zebrafish, Danio rerio. 2016, University of Zurich, Faculty of Science.
  • Kamoun, Sophien; Zipfel, Cyril (2016). Class uncorrected errors as misconduct. Nature, 531(7593):173.
  • Singla, Jyoti. Genetic Characterization and High Resolution Analysis of Lr75: a Novel Adult Plant Leaf Rust Resistance Gene in Wheat. 2016, University of Zurich, Faculty of Science.
  • Hwang, Jae-Ung; Song, Won-Yong; Hong, Daewoong; Ko, Donghwi; Yamaoka, Yasuyo; Jang, Sunghoon; Yim, Sojeong; Lee, Eunjung; Khare, Deepa; Kim, Kyungyoon; Palmgren, Michael; Yoon, Hwan Su; Martinoia, Enrico; Lee, Youngsook (2016). Plant ABC transporters enable many unique aspects of a terrestrial plant's lifestyle. Molecular Plant, 9(3):338-355.
  • Kuhn, Benjamin M; Errafi, Sanae; Bucher, Rahel; Dobrev, Petre; Geisler, Markus; Bigler, Laurent; Zažímalová, Eva; Ringli, Christoph (2016). 7-Rhamnosylated flavonols modulate homeostasis of the plant hormone auxin and affect plant development. Journal of Biological Chemistry, 291(10):5385-5395.
  • Bheema Lingeswara Reddy, I N; Chandrasekhar, K; Zewdu, Y; Dinoor, A; Keller, B; Ben-David, R (2016). Identification and genetic mapping of PmAF7DS a powdery mildew resistance gene in bread wheat (Triticum aestivum L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 129(6):1127-1137.
  • Bourras, Salim; McNally, Kaitlin E; Müller, Marion C; Wicker, Thomas; Keller, Beat (2016). Avirulence Genes in Cereal Powdery Mildews: The Gene-for-Gene Hypothesis 2.0. Frontiers in Plant Science:7:241.
  • Morales, Jorge; Kadota, Yasuhiro; Zipfel, Cyril; Molina, Antonio; Torres, Miguel-Angel (2016). The Arabidopsis NADPH oxidases RbohD and RbohF display differential expression patterns and contributions during plant immunity. Journal of Experimental Botany, 67(6):1663-1676.
  • Pedrazzini, Emanuela; Caprera, Andrea; Fojadelli, Ilaria; Stella, Alessandra; Rocchetti, Alessandra; Bassin, Barbara; Martinoia, Enrico; Vitale, Alessandro (2016). The Arabidopsis tonoplast is almost devoid of glycoproteins with complex N-glycans, unlike the rat lysosomal membrane. Journal of Experimental Botany, 67(6):1769-1781.
  • Lira, Bruno Silvestre; Rosado, Daniele; Almeida, Juliana; de Souza, Amanda Pereira; Buckeridge, Marcos Silveira; Purgatto, Eduardo; Guyer, Luzia; Hörtensteiner, Stefan; Freschi, Luciano; Rossi, Magdalena (2016). Pheophytinase knockdown impacts carbon metabolism and nutraceutical content under normal growth conditions in tomato. Plant & Cell Physiology, 57(3):642-653.
  • Krattinger, Simon G; Keller, Beat (2016). Trapping the intruder — immune receptor domain fusions provide new molecular leads for improving disease resistance in plants. Genome Biology, 17(1):1-3.
  • Horrer, Daniel. Starch Metabolism in Guard Cells of Arabidopsis thaliana. 2016, University of Zurich, Faculty of Science.
  • Yue, Kun; Sandal, Priyanka; Williams, Elisabeth L; Murphy, Evan; Stes, Elisabeth; Nikonorova, Natalia; Ramakrishna, Priya; Czyzewicz, Nathan; Montero-Morales, Laura; Kumpf, Robert; Lin, Zhefeng; van de Cotte, Brigitte; Iqbal, Mudassar; Van Bel, Michiel; Van De Slijke, Eveline; Meyer, Matthew R; Gadeyne, Astrid; Zipfel, Cyril; De Jaeger, Geert; Van Montagu, Marc; Van Damme, Daniël; Gevaert, Kris; Rao, A Gururaj; Beeckman, Tom; De Smet, Ive (2016). PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root. Proceedings of the National Academy of Sciences of the United States of America, 113(5):1447-1452.
  • Almeida, Juliana; et al; Guyer, Luzia; Hörtensteiner, Stefan; Rossi, Magdalena (2016). Down-regulation of tomato PHYTOL KINASE strongly impairs tocopherol biosynthesis and affects prenyllipid metabolism in an organ-specific manner. Journal of Experimental Botany, 67(3):919-934.
  • Trempel, Fabian; Kajiura, Hiroyuki; Ranf, Stefanie; Grimmer, Julia; Westphal, Lore; Zipfel, Cyril; Scheel, Dierk; Fujiyama, Kazuhito; Lee, Justin (2016). Altered glycosylation of exported proteins, including surface immune receptors, compromises calcium and downstream signaling responses to microbe-associated molecular patterns in Arabidopsis thaliana. BMC Plant Biology, 16:31.
  • Singla, J; Krattinger, S G (2016). Biotic stress resistance genes in wheat. In: Wrigley, C W; Faubion, J; Corke, H; Seetharaman, K. Encyclopedia of Food Grains. Oxford: Elsevier, 388-392.
  • Mächler, Elvira; Deiner, Kristy; Spahn, Fabienne; Altermatt, Florian (2016). Fishing in the water: effect of sampled water volume on environmental dna-based detection of macroinvertebrates. Environmental Science & Technology, 50(1):305-312.
  • Medeiros, David B; Martins, Samuel C V; Cavalcanti, João Henrique F; Daloso, Danilo M; Martinoia, Enrico; Nunes-Nesi, Adriano; DaMatta, Fábio M; Fernie, Alisdair R; Araújo, Wagner L (2016). Enhanced photosynthesis and growth in atquac1 knockout mutants are due to altered organic acid accumulation and an increase in both stomatal and mesophyll conductance. Plant Physiology, 170(1):86-101.
  • Sakuraba, Yasuhito; Han, Su-Hyun; Lee, Sang-Hwa; Hörtensteiner, Stefan; Paek, Nam-Chon (2016). Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Reports, 35(1):155-166.
  • Inglis, R Fredrik; Biernaskie, Jay; Gardner, Andy; Kümmerli, Rolf (2016). Presence of a loner strain maintains cooperation and diversity in well-mixed bacterial communities. Proceedings of the Royal Society of London, Series B: Biological Sciences, 283(1822):20152682.
  • Kadota, Yasuhiro; Macho, Alberto P; Zipfel, Cyril (2016). Immunoprecipitation of Plasma Membrane Receptor-Like Kinases for Identification of Phosphorylation Sites and Associated Proteins. In: Botella, Miguel A; Botella, Jose. Plant signal transduction. New York: Springer, 133-144.
  • Zürcher, Evelyne. Characterization of the Arabidopsis family of Purine Permeases as candidates for a Cytokinin transport system. 2016, University of Zurich, Faculty of Science.
  • Szklarczyk, Damian; Morris, John H; Cook, Helen; Kuhn, Michael; Wyder, Stefan; Simonovic, Milan; Santos, Alberto; Doncheva, Nadezhda T; Roth, Alexander; Bork, Peer; Jensen, Lars J; von Mering, Christian (2016). The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible. Nucleic Acids Research, 45(D1):D362-D368.
  • Lüthi, C; Romeis, J; Mauch, F; Grossniklaus, U; Studer, B; Kohler, S (2016). Neue Pflanzenzüchtungstechniken für die Schweizer Landwirtschaft – grosses Potenzial, offene Zukunft. Bern: Akademien der Wisschenschaften Schwei / Swiss Academies Factsheets.
  • Kamber, Tim; Buchmann, Jan P; Pothier, Joël F; Smits, Theo H M; Wicker, Thomas; Duffy, Brion (2016). Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection. Scientific Reports, 6:21600.
  • Wicker, Thomas; Yu, Yeisoo; Haberer, Georg; Mayer, Klaus F X; Marri, Pradeep Reddy; Rounsley, Steve; Chen, Mingsheng; Zuccolo, Andrea; Panaud, Olivier; Wing, Rod A; Roffler, Stefan (2016). DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses. Nature Communications, 7:12790.
  • Schirdewahn, T; Mascher, M; Bucheli, T D; Bertossa, M; Musa, T; Wettstein, F E; Keller, B; Vogelsang, S (2016). Anbaufaktoren beeinflussen Fusarien und Mykotoxine in Schweizer Gerste. Agrarforschung Schweiz, 7(9):372-377.
  • De Sarkar, Suman; Blom, Judith F; Bethuel, Yann; Jüttner, Friedrich; Gademann, Karl (2016). Allelopathic Activity of the Iron Chelator Anachelin - A Molecular Hybrid with a Dual Mode of Action. Helvetica Chimica Acta, 99(10):760-773.
  • Faltermann, Susanne; Grundler, Verena; Gademann, Karl; Pernthaler, Jakob; Fent, Karl (2016). Comparative effects of nodularin and microcystin-LR in zebrafish: 2. Uptake and molecular effects in eleuthero-embryos and adult liver with focus on endoplasmic reticulum stress. Aquatic Toxicology, 171:77-87.
  • Horňák, Karel; Schmidheiny, Helen; Pernthaler, Jakob (2016). High-throughput determination of dissolved free amino acids in unconcentrated freshwater by ion-pairing liquid chromatography and mass spectrometry. Journal of Chromatography. A, 1440:85-93.
  • Yankova, Yana; Villiger, Jörg; Pernthaler, Jakob; Schanz, Ferdinand; Posch, Thomas (2016). Prolongation, deepening and warming of the metalimnion change habitat conditions of the harmful filamentous cyanobacterium Planktothrix rubescens in a prealpine lake. Hydrobiologia, 776(1):125-138.
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