Publications IPMB

ZORA Publication List

Publications

• 2023

  • Cakir, Isa; Aerni, Philipp; Bergman, Manfred Max; Cakir, Benjamin (2023). esg2go: A Method to Reduce Bias, Improve Coherence, and Increase Practicality of ESG Rating and Reporting. Sustainability, 15(24):16872.
  • Goto, Yukihisa; Kadota, Yasuhiro; Mbengue, Malick; Lewis, Jennifer D; Matsui, Hidenori; Maki, Noriko; Sklenar, Jan; Derbyshire, Paul; Shibata, Arisa; Ichihashi, Yasunori; Guttman, David S; Nakagami, Hirofumi; Suzuki, Takamasa; Menke, Frank L H; Robatzek, Silke; Desveaux, Darrell; Zipfel, Cyril; Shirasu, Ken (2023). The leucine-rich repeat receptor kinase QSK1 is a novel regulator of PRR-RBOHD complex and is employed by the bacterial effector HopF2$_{Pto}$ to modulate plant immunity. bioRxiv 571443, Cold Spring Harbor Laboratory.
  • Heredia-Ponce, Zaira; Secchi, Eleonora; Toyofuku, Masanori; Marinova, Gabriela; Savorana, Giovanni; Eberl, Leo (2023). Genotoxic stress stimulates eDNA release via explosive cell lysis and thereby promotes streamer formation of Burkholderia cenocepacia H111 cultured in a microfluidic device. npj Biofilms and Microbiomes, 9(1):96.
  • Dias, Márcia Gonçalves; Doss, Bassem; Rawat, Anamika; Siegel, Kristen R; Mahathanthrige, Tharika; Sklenar, Jan; Derbyshire, Paul; Dharmasena, Thakshila; Cameron, Emma; Zipfel, Cyril; Menke, Frank L H; Monaghan, Jacqueline (2023). Subfamily C7 Raf-like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in Arabidopsis thaliana. bioRxiv 569073, Cold Spring Harbor Laboratory.
  • Wanke, Alan; van Boerdonk, Sarah; Mahdi, Lisa Katharina; Wawra, Stephan; Neidert, Miriam; Chandrasekar, Balakumaran; Saake, Pia; Saur, Isabel M L; Derbyshire, Paul; Holton, Nicholas; Menke, Frank L H; Brands, Mathias; Pauly, Markus; Acosta, Ivan F; Zipfel, Cyril; Zuccaro, Alga (2023). A GH81-type β-glucan-binding protein enhances colonization by mutualistic fungi in barley. Current Biology, 33(23):5071-5084.e7.
  • Bender, S Franz; Schulz, Stefanie; Martínez-Cuesta, Rubén; Laughlin, Ronald J; Kublik, Susanne; Pfeiffer-Zakharova, Kristina; Vestergaard, Gisle; Hartman, Kyle; Parladé, Eloi; Römbke, Jörg; Watson, Catherine J; Schloter, Michael; van der Heijden, Marcel G A (2023). Simplification of soil biota communities impairs nutrient recycling and enhances above- and belowground nitrogen losses. New Phytologist, 240(5):2020-2034.
  • Feng, Maomao; Varliero, Gilda; Qi, Weihong; Stierli, Beat; Edwards, Arwyn; Robinson, Serina; van der Heijden, Marcel G A; Frey, Beat (2023). Microbial dynamics in soils of the Damma glacier forefield show succession in the functional genetic potential. Environmental Microbiology, 25(12):3116-3138.
  • Tourdot, Edouard; Grob, Stefan (2023). Three-dimensional chromatin architecture in plants - General features and novelties. European Journal of Cell Biology, 102(4):151344.
  • Yang, Huanjie; Kim, Xeniya; Skłenar, Jan; Aubourg, Sébastien; Sancho-Andrés, Gloria; Stahl, Elia; Guillou, Marie-Charlotte; Gigli-Bisceglia, Nora; Tran Van Canh, Loup; Bender, Kyle W; Stintzi, Annick; Reymond, Philippe; Sánchez-Rodríguez, Clara; Testerink, Christa; Renou, Jean-Pierre; Menke, Frank L H; Schaller, Andreas; Rhodes, Jack; Zipfel, Cyril (2023). Subtilase-mediated biogenesis of the expanded family of SERINE RICH ENDOGENOUS PEPTIDES. Nature Plants, 9(12):2085-2094.
  • Lutz, Stefanie; Bodenhausen, Natacha; Hess, Julia; Valzano-Held, Alain; Waelchli, Jan; Deslandes-Hérold, Gabriel; Schlaeppi, Klaus; van der Heijden, Marcel G A (2023). Soil microbiome indicators can predict crop growth response to large-scale inoculation with arbuscular mycorrhizal fungi. Nature Microbiology, 8(12):2277-2289.
  • Mermet, Sarah; Voisin, Maxime; Mordier, Joris; Dubos, Tristan; Tutois, Sylvie; Tuffery, Pierre; Baroux, Célia; Tamura, Kentaro; Probst, Aline V; Vanrobays, Emmanuel; Tatout, Christophe (2023). Evolutionarily conserved protein motifs drive interactions between the plant nucleoskeleton and nuclear pores. Plant Cell, 35(12):4284-4303.
  • Bucheli, Thomas D; Barmettler, Elias; Bartolomé, Nora; Hilber, Isabel; Hornak, Karel; Meuli, Reto G; Reininger, Vanessa; Riedo, Judith; Rösch, Andrea; Sutter, Philipp; van der Heijden, Marcel G A; Wächter, Daniel; Walder, Florian (2023). Pesticides in Agricultural Soils: Major Findings from Various Monitoring Campaigns in Switzerland. Chimia, 77(11):750-757.
  • Sasse, Joelle (2023). Plant Chemistry and Morphological Considerations for Efficient Carbon Sequestration. Chimia, 77(11):726-732.
  • Lintz, Julie; Goto, Yukihisa; Bender, Kyle W; Bchini, Raphaël; Dubrulle, Guillaume; Cawston, Euan; Zipfel, Cyril; Duplessis, Sebastien; Petre, Benjamin (2023). Genetically-clustered antifungal phytocytokines and receptor proteins function together to trigger plant immune signaling. bioRxiv 568785, University of Zurich.
  • Bonnet, Diane Marie Valerie; Tirot, Louis; Grob, Stefan; Jullien, Pauline Emilie (2023). Methylome Response to Proteasome Inhibition by Pseudomonas syringae Virulence Factor Syringolin A. Molecular Plant-Microbe Interactions, 36(11):693-704.
  • Kesten, Christopher; Leitner, Valentin; Dora, Susanne; Sims, James W; Dindas, Julian; Zipfel, Cyril; De Moraes, Consuelo M; Sanchez-Rodriguez, Clara (2023). Soil-borne fungi alter the apoplastic purinergic signaling in plants by deregulating the homeostasis of extracellular ATP and its metabolite adenosine. eLife, 12:online.
  • Manser, Beatrice; Zbinden, Helen; Herren, Gerhard; Steger, Joel; Isaksson, Jonatan; Bräunlich, Stephanie; Wicker, Thomas; Keller, Beat (2023). Wheat zinc finger protein TaZF interacts with both the powdery mildew AvrPm2 protein and the corresponding wheat Pm2a immune receptor. Plant Communications:online.
  • McLaughlin, Sarah; Joller, Charlotte; Siffert, Alexandra; Stirnemann, Eva Marina; Sasse, Joelle (2023). A Versatile Glass Jar System for Semihydroponic Root Exudate Profiling. Journal of Visualized Experiments, 201:e66070.
  • Sharma, Parva Kumar; Ahmed, Hanin Ibrahim; Heuberger, Matthias; Koo, Dal-Hoe; Quiroz-Chavez, Jesus; Adhikari, Laxman; Raupp, John; Cauet, Stéphane; Rodde, Nathalie; Cravero, Charlotte; Callot, Caroline; Yadav, Inderjit Singh; Kathiresan, Nagarajan; Athiyannan, Naveenkumar; Ramirez-Gonzalez, Ricardo H; Uauy, Cristobal; Wicker, Thomas; Abrouk, Michael; Gu, Yong Q; Poland, Jesse; Krattinger, Simon G; Lazo, Gerard R; Tiwari, Vijay K (2023). An online database for einkorn wheat to aid in gene discovery and functional genomics studies. Database, 2023:baad079.
  • Moussu, Steven; Lee, Hyun Kyung; Haas, Kalina T; Broyart, Caroline; Rathgeb, Ursina; De Bellis, Damien; Levasseur, Thomas; Schoenaers, Sébastjen; Fernandez, Gorka S; Grossniklaus, Ueli; Bonnin, Estelle; Hosy, Eric; Vissenberg, Kris; Geldner, Niko; Cathala, Bernard; Höfte, Herman; Santiago, Julia (2023). Plant cell wall patterning and expansion mediated by protein-peptide-polysaccharide interaction. Science, 382(6671):719-725.
  • Hisanaga, Tetsuya; Romani, Facundo; Wu, Shuangyang; Kowar, Teresa; Wu, Yue; Lintermann, Ruth; Fridrich, Arie; Cho, Chung Hyun; Chaumier, Timothée; Jamge, Bhagyshree; Montgomery, Sean A; Axelsson, Elin; Akimcheva, Svetlana; Dierschke, Tom; Bowman, John L; Fujiwara, Takayuki; Hirooka, Shunsuke; Miyagishima, Shin-Ya; Dolan, Liam; Tirichine, Leila; Schubert, Daniel; Berger, Frédéric (2023). The Polycomb repressive complex 2 deposits H3K27me3 and represses transposable elements in a broad range of eukaryotes. Current Biology, 33(20):4367-4380.e9.
  • Hofer, Cyrill; Lingenhag, Seraina; Serra Moncadas, Lucas; Rain-Franco, Angel; Andrei, Adrian-Stefan (2023). Q20+ Nanopore sequencing data recover a high-quality Asticcacaulis sp. genome. Microbiology Resource Announcements, 12(10):online.
  • Serra Moncadas, Lucas; Rogenmoser, Janis; Hofer, Cyrill; Rain-Franco, Angel; Andrei, Adrian-Stefan (2023). Pseudomonas kielensis str. Ze23jcel16 complete genome obtained through R10.4.1 Nanopore Flow cell chemistry. Microbiology Resource Announcements:online.
  • Klein, Tamir; Rog, Ido; Livne-Luzon, Stav; van der Heijden, Marcel G A; Körner, Christian (2023). Belowground carbon transfer across mycorrhizal networks among trees: Facts, not fantasy. Open research Europe, 3:online.
  • Walder, Florian; Büchi, Lucie; Wagg, Cameron; Colombi, Tino; Banerjee, Samiran; Hirte, Juliane; Mayer, Jochen; Six, Johan; Keller, Thomas; Charles, Raphaël; van der Heijden, Marcel G A (2023). Synergism between production and soil health through crop diversification, organic amendments and crop protection in wheat‐based systems. Journal of Applied Ecology, 60(10):2091-2104.
  • Wittwer, Raphaël A; Klaus, Valentin H; Miranda Oliveira, Emily; Sun, Qing; Liu, Yujie; Gilgen, Anna K; Buchmann, Nina; van der Heijden, Marcel G A (2023). Limited capability of organic farming and conservation tillage to enhance agroecosystem resilience to severe drought. Agricultural Systems, 211:103721.
  • Petitpierre, Blaise; Boserup, Julie; Möhl, Adrian; Rometsch, Sibyl; Aubry, Sylvain (2023). Importance of agriculture for crop wild relatives conservation in Switzerland. Global Ecology and Conservation, 46:e02588.
  • Blekemolen, Mila C; Liu, Zunyong; Stegman, Martin; Zipfel, Cyril; Shan, Libo; Takken, Frank L W (2023). The PTI-suppressing Avr2 effector from Fusarium oxysporum suppresses mono-ubiquitination and plasma membrane dissociation of BIK1. Molecular Plant Pathology, 24(10):1273-1286.
  • Pernthaler, Jakob; Krempaska, Natalia; Le Moigne, Alizée (2023). Small-scale spatial beta diversity of bacteria in the mixed upper layer of a lake. Environmental Microbiology, 25(10):1847-1859.
  • Aerni, Philipp; Kock, Michael. «Gentechnik» – Schluss mit alten Grabenkämpfen [Gastkommentar]. In: Neue Zürcher Zeitung, 224, 27 September 2023, 19.
  • Minadakis, Nikolaos; Williams, Hefin; Horvath, Robert; Caković, Danka; Stritt, Christoph; Thieme, Michael; Bourgeois, Yann; Roulin, Anne C (2023). The demographic history of the wild crop relative Brachypodium distachyon is shaped by distinct past and present ecological niches. Peer Community Journal, 3:e84.
  • Bodenhausen, Natacha; Hess, Julia; Valzano-Held, Alain; Deslandes‐Hérold, Gabriel; Waelchli, Jan; Furrer, Reinhard; van der Heijden, Marcel G A; Schlaeppi, Klaus (2023). Predicting soil fungal communities from chemical and physical properties. Journal of Sustainable Agriculture and Environment, 2(3):225-237.
  • Mühlenbeck, Henning; Tsutsui, Yuko; Lemmon, Mark A; Bender, Kyle W; Zipfel, Cyril (2023). Allosteric activation of the co-receptor BAK1 by the EFR receptor kinase initiates immune signaling. bioRxiv 554490, Cold Spring Harbor Laboratory.
  • Anthony, Mark A; Bender, S Franz; van der Heijden, Marcel G A (2023). Enumerating soil biodiversity. Proceedings of the National Academy of Sciences of the United States of America, 120(33):e2304663120.
  • Saripalli, Gautam; Adhikari, Laxman; Amos, Cameron; Kibriya, Ashraf; Ahmed, Hanin Ibrahim; Heuberger, Matthias; Raupp, John; Athiyannan, Naveenkumar; Wicker, Thomas; Abrouk, Michael; Wallace, Sydney; Hosseinirad, Seyedali; Chhuneja, Parveen; Livesay, Janelle; Rawat, Nidhi; Krattinger, Simon G; Poland, Jesse; Tiwari, Vijay (2023). Integration of genetic and genomics resources in einkorn wheat enables precision mapping of important traits. Communications Biology, 6(1):online.
  • Cao, Yu; Kümmel, Florian; Logemann, Elke; Gebauer, Jan M; Lawson, Aaron W; Yu, Dongli; Uthoff, Matthias; Keller, Beat; Jirschitzka, Jan; Baumann, Ulrich; Tsuda, Kenichi; Chai, Jijie; Schulze-Lefert, Paul (2023). Structural polymorphisms within a common powdery mildew effector scaffold as a driver of coevolution with cereal immune receptors. Proceedings of the National Academy of Sciences of the United States of America, 120(32):e2307604120.
  • Ojosnegros, Sara; Alvarez, José Manuel; Grossmann, Jonas; Gagliardini, Valeria; Quintanilla, Luis G; Grossniklaus, Ueli; Fernández, Helena (2023). Proteome and Interactome Linked to Metabolism, Genetic Information Processing, and Abiotic Stress in Gametophytes of Two Woodferns. International Journal of Molecular Sciences, 24(15):online.
  • Israeli, Alon (2023). Correction: Alon Israeli and others, Modulating auxin response stabilizes tomato fruit set. Plant Physiology, 192(4):3204.
  • Zhang, Qiyan; Wang, Zejia; Lu, Xinyue; Yan, Huiru; Zhang, Huawei; He, Hang; Bischof, Sylvain; Harris, C Jake; Liu, Qikun (2023). DDT-RELATED PROTEIN4-IMITATION SWITCH alters nucleosome distribution to relieve transcriptional silencing in Arabidopsis. Plant Cell, 35(8):3109-3126.
  • Zhang, Jie; Wysocki, Robert; Li, Fangbai; Yu, Min; Martinoia, Enrico; Song, Won-Yong (2023). Role of ubiquitination in arsenic tolerance in plants. Trends in Plant Science, 28(8):880-892.
  • Romero, Ferran; Hilfiker, Sarah; Edlinger, Anna; Held, Alain; Hartman, Kyle; Labouyrie, Maëva; van der Heijden, Marcel G A (2023). Soil microbial biodiversity promotes crop productivity and agro-ecosystem functioning in experimental microcosms. Science of the Total Environment, 885:163683.
  • Ahmed, Hanin Ibrahim; Heuberger, Matthias; Schoen, Adam; Koo, Dal-Hoe; Quiroz-Chavez, Jesus; Adhikari, Laxman; Raupp, John; Cauet, Stéphane; Rodde, Nathalie; Cravero, Charlotte; Callot, Caroline; Lazo, Gerard R; Kathiresan, Nagarajan; Sharma, Parva K; Moot, Ian; Yadav, Inderjit Singh; Singh, Lovepreet; Saripalli, Gautam; Rawat, Nidhi; Datla, Raju; Athiyannan, Naveenkumar; Ramirez-Gonzalez, Ricardo H; Uauy, Cristobal; Wicker, Thomas; Tiwari, Vijay K; Abrouk, Michael; Poland, Jesse; Krattinger, Simon G (2023). Einkorn genomics sheds light on history of the oldest domesticated wheat. Nature, 620(7975):830-838.
  • Martinoia, Enrico; Neuhaus, Ekkehard (2023). A complex network regulating malate contents during fruit ripening in climacteric fruits. New Phytologist, 239(3):821-823.
  • Hartman, Kyle; Schmid, Marc W; Bodenhausen, Natacha; Bender, S Franz; Valzano-Held, Alain Y; Schlaeppi, Klaus; van der Heijden, Marcel G A (2023). A symbiotic footprint in the plant root microbiome. Environmental Microbiome, 18(1):65.
  • Teano, Gianluca; Concia, Lorenzo; Wolff, Léa; Carron, Léopold; Biocanin, Ivona; Adamusová, Kateřina; Fojtová, Miloslava; Bourge, Michael; Kramdi, Amira; Colot, Vincent; Grossniklaus, Ueli; Bowler, Chris; Baroux, Célia; Carbone, Alessandra; Probst, Aline V; Schrumpfová, Petra Procházková; Fajkus, Jiří; Amiard, Simon; Grob, Stefan; Bourbousse, Clara; Barneche, Fredy (2023). Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis. Cell Reports, 42(8):112894.
  • Pršić, Jelena; Gilliard, Guillaume; Ibrahim, Heba; Argüelles-Arias, Anthony; Rondelli, Valeria; Crowet, Jean-Marc; Genva, Manon; Luzuriaga-Loaiza, W Patricio; Deboever, Estelle; Nasir, M Nail; Lins, Laurence; Mathelie-Guinlet, Marion; Boubsi, Farah; Eschrig, Sabine; Ranf, Stefanie; Dorey, Stephan; Coninck, Barbara De; Nürnberger, Thorsten; Mongrand, Sébastien; Höfte, Monica; Zipfel, Cyril; Dufrêne, Yves F; Koutsioubas, Alexandros; Brocca, Paola; Deleu, Magali; Ongena, Marc (2023). Mechanosensing and Sphingolipid-Docking Mediate Lipopeptide-Induced Immunity in Arabidopsis. bioRxiv 547613, University of Zurich.
  • Hug, Sebastian; Heiniger, Benjamin; Bolli, Kim; Paszti, Sarah; Eberl, Leo; Ahrens, Christian H; Pessi, Gabriella (2023). Paraburkholderia sabiae Uses One Type VI Secretion System (T6SS-1) as a Powerful Weapon against Notorious Plant Pathogens. Microbiology Spectrum:online.
  • Li, Zheng; Wang, Ming; Zhong, Zhenhui; Gallego-Bartolomé, Javier; Feng, Suhua; Jami-Alahmadi, Yasaman; Wang, Xinyi; Wohlschlegel, James; Bischof, Sylvain; Long, Jeff A; Jacobsen, Steven E (2023). The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. Nature Communications, 14(1):online.
  • George, Jeoffrey; Stegmann, Martin; Monaghan, Jacqueline; Bailey-Serres, Julia; Zipfel, Cyril (2023). Arabidopsis translation initiation factor binding protein CBE1 negatively regulates accumulation of the NADPH oxidase respiratory burst oxidase homolog D. Journal of Biological Chemistry, 299(8):105018.
  • Toda, Misato; Walder, Florian; van der Heijden, Marcel G A (2023). Organic management and soil health promote nutrient use efficiency. Journal of Sustainable Agriculture and Environment, 2(3):215-224.
  • Goig, Galo A; Menardo, Fabrizio; Salaam-Dreyer, Zubeida; Dippenaar, Anzaan; Streicher, Elizabeth M; Daniels, Johnny; Reuter, Anja; Borrell, Sonia; Reinhard, Miriam; Doetsch, Anna; Beisel, Christian; Warren, Robin M; Cox, Helen; Gagneux, Sebastien (2023). Effect of compensatory evolution in the emergence and transmission of rifampicin-resistant Mycobacterium tuberculosis in Cape Town, South Africa: a genomic epidemiology study. The Lancet Microbe, 4(7):e506-e515.
  • Toyofuku, Masanori; Schild, Stefan; Kaparakis-Liaskos, Maria; Eberl, Leo (2023). Composition and functions of bacterial membrane vesicles. Nature Reviews. Microbiology, 21(7):415-430.
  • Romero, Ferran; Argüello, Alicia; de Bruin, Susanne; van der Heijden, Marcel G A (2023). The plant–mycorrhizal fungi collaboration gradient depends on plant functional group. Functional Ecology, 37(9):2386-2398.
  • Bender, Kyle W; Zipfel, Cyril (2023). Paradigms of receptor kinase signaling in plants. Biochemical Journal, 480(12):835-854.
  • Riedo, Judith; Yokota, Aya; Walther, Barbara; Bartolomé, Nora; van der Heijden, Marcel G A; Bucheli, Thomas D; Walder, Florian (2023). Temporal dynamics of total and bioavailable fungicide concentrations in soil and their effect upon nine soil microbial markers. Science of the Total Environment, 878:162995.
  • Labouyrie, Maëva; Ballabio, Cristiano; Romero, Ferran; Panagos, Panos; Jones, Arwyn; Schmid, Marc W; Mikryukov, Vladimir; Dulya, Olesya; Tedersoo, Leho; Bahram, Mohammad; Lugato, Emanuele; van der Heijden, Marcel G A; Orgiazzi, Alberto (2023). Patterns in soil microbial diversity across Europe.. Nature Communications, 14(1):online.
  • Wuest, Samuel E; Schulz, Lukas; Rana, Surbhi; Frommelt, Julia; Ehmig, Merten; Pires, Nuno D; Grossniklaus, Ueli; Hardtke, Christian S; Hammes, Ulrich Z; Schmid, Bernhard; Niklaus, Pascal A (2023). Single-gene resolution of diversity-driven overyielding in plant genotype mixtures. Nature Communications, 14(1):3379.
  • Adero, Mark Ochieng; Tripathi, Jaindra Nath; Oduor, Richard Okoth; Zipfel, Cyril; Tripathi, Leena (2023). Transgenic expression of Arabidopsis ELONGATION FACTOR-TU RECEPTOR (AtEFR) gene in banana enhances resistance to Banana Xanthomonas Wilt disease. bioRxiv 543870, University of Zurich.
  • Edlinger, Anna; Garland, Gina; Banerjee, Samiran; Degrune, Florine; García-Palacios, Pablo; Herzog, Chantal; Pescador, David Sánchez; Romdhane, Sana; Ryo, Masahiro; Saghaï, Aurélien; Hallin, Sara; Maestre, Fernando T; Philippot, Laurent; Rillig, Matthias C; van der Heijden, Marcel G A (2023). The impact of agricultural management on soil aggregation and carbon storage is regulated by climatic thresholds across a 3000 km European gradient. Global Change Biology, 29(11):3177-3192.
  • Megremis, Spyridon; Constantinides, Bede; Xepapadaki, Paraskevi; Yap, Chuan Fu; Sotiropoulos, Alexandros G; Bachert, Claus; Finotto, Susetta; Jartti, Tuomas; Tapinos, Avraam; Vuorinen, Tytti; Andreakos, Evangelos; Robertson, David L; Papadopoulos, Nikolaos G (2023). Respiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma. Scientific Reports, 13(1):8319.
  • Formenti, Ludovico; Iwanycki Ahlstrand, Natalie; Hassemer, Gustavo; Glauser, Gaëtan; van den Hoogen, Johan; Rønsted, Nina; van der Heijden, Marcel; Crowther, Thomas W; Rasmann, Sergio (2023). Macroevolutionary decline in mycorrhizal colonization and chemical defense responsiveness to mycorrhization. iScience, 26(5):106632.
  • Moreira, Carlos J S; Escórcio, Rita; Bento, Artur; Bjornson, Marta; Tomé, Ana S; Martins, Celso; Fanuel, Mathieu; Martins, Isabel; Bakan, Benedicte; Zipfel, Cyril; Pereira, Cristina Silva (2023). Cutin-Derived Oligomers Act as Damage-Associated Molecular Patterns in Arabidopsis thaliana. bioRxiv 540997, University of Zurich.
  • Rillig, Matthias C; van der Heijden, Marcel G A; Berdugo, Miguel; Liu, Yu-Rong; Riedo, Judith; Sanz-Lazaro, Carlos; Moreno-Jiménez, Eduardo; Romero, Ferran; Tedersoo, Leho; Delgado-Baquerizo, Manuel (2023). Increasing the number of stressors reduces soil ecosystem services worldwide. Nature Climate Change, 13(5):478-483.
  • Grayfer, Tatyana D; Yamani, Khalil; Jung, Erik; Chesnokov, Gleb A; Ferrara, Isabella; Hsiao, Chien-Chi; Georgiou, Antri; Michel, Jeremy; Bailly, Aurélien; Sieber, Simon; Eberl, Leo; Gademann, Karl (2023). Allylic Carbocyclic Inhibitors Covalently Bind Glycoside Hydrolases. JACS Au, 3(4):1151-1161.
  • Hurst, Charlotte H; Turnbull, Dionne; Xhelilaj, Kaltra; Myles, Sally; Pflughaupt, Robin L; Kopischke, Michaela; Davies, Paul; Jones, Susan; Robatzek, Silke; Zipfel, Cyril; Gronnier, Julien; Hemsley, Piers A (2023). S-acylation stabilizes ligand-induced receptor kinase complex formation during plant pattern-triggered immune signaling. Current Biology, 33(8):1588-1596.e6.
  • Nowicka, Anna; Ferková, Luboslava; Said, Mahmoud; Kovacik, Martin; Zwyrtková, Jana; Baroux, Célia; Pecinka, Ales (2023). Non-Rabl chromosome organization in endoreduplicated nuclei of barley embryo and endosperm tissues. Journal of Experimental Botany, 74(8):2527-2541.
  • Wanke, Alan; van Boerdonk, Sarah; Mahdi, Lisa K; Wawra, Stephan; Neidert, Miriam; Chandrasekar, Balakumaran; Saake, Pia; Saur, Isabel M L; Derbyshire, Paul; Holton, Nicholas; Menke, Frank L H; Brands, Mathias; Pauly, Markus; Acosta, Ivan F; Zipfel, Cyril; Zuccaro, Alga (2023). A GH81-type β-glucan-binding protein facilitates colonization by mutualistic fungi in barley. bioRxiv 536646, University of Zurich.
  • Smokvarska, Marija; Bayle, Vincent; Maneta-Peyret, Lilly; Fouillen, Laetitia; Poitout, Arthur; Dongois, Armelle; Fiche, Jean-Bernard; Gronnier, Julien; Garcia, José; Höfte, Herman; Nolmann, Marcelo; Zipfel, Cyril; Maurel, Christophe; Moreau, Patrick; Jaillais, Yvon; Martiniere, Alexandre (2023). The receptor kinase FERONIA regulates phosphatidylserine localization at the cell surface to modulate ROP signaling. Science Advances, 9(14):eadd4791.
  • Pakuła, Konrad; Sequeiros-Borja, Carlos; Biała-Leonhard, Wanda; Pawela, Aleksandra; Banasiak, Joanna; Bailly, Aurélien; Radom, Marcin; Geisler, Markus; Brezovsky, Jan; Jasiński, Michał (2023). Restriction of access to the central cavity is a major contributor to substrate selectivity in plant ABCG transporters. Cellular and Molecular Life Sciences, 80(4):105.
  • Zwyer, Michaela; Rutaihwa, Liliana K; Windels, Etthel; Hella, Jerry; Menardo, Fabrizio; Sasamalo, Mohamed; Sommer, Gregor; Schmülling, Lena; Borrell, Sonia; Reinhard, Miriam; Dötsch, Anna; Hiza, Hellen; Stritt, Christoph; Sikalengo, George; Fenner, Lukas; De Jong, Bouke C; Kato-Maeda, Midori; Jugheli, Levan; Ernst, Joel D; Niemann, Stefan; Jeljeli, Leila; Ballif, Marie; Egger, Matthias; Rakotosamimanana, Niaina; Yeboah-Manu, Dorothy; Asare, Prince; Malla, Bijaya; Dou, Horng Yunn; Zetola, Nicolas; Wilkinson, Robert J; et al (2023). Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania. PLoS Pathogens, 19(4):e1010893.
  • Le Moigne, Alizée; Randegger, Florian; Gupta, Anubhav; Petchey, Owen L; Pernthaler, Jakob (2023). Stochasticity causes high β-diversity and functional divergence of bacterial assemblages in closed systems. Ecology, 104(4):e4005.
  • Liu, Yu-Rong; van der Heijden, Marcel G A; Riedo, Judith; Sanz-Lazaro, Carlos; Eldridge, David J; Bastida, Felipe; Moreno-Jiménez, Eduardo; Zhou, Xin-Quan; Hu, Hang-Wei; He, Ji-Zheng; Moreno, José L; Abades, Sebastian; Alfaro, Fernando; Bamigboye, Adebola R; Berdugo, Miguel; Blanco-Pastor, José L; de Los Ríos, Asunción; Duran, Jorge; Grebenc, Tine; Illán, Javier G; Makhalanyane, Thulani P; Molina-Montenegro, Marco A; Nahberger, Tina U; Peñaloza-Bojacá, Gabriel F; Plaza, César; Rey, Ana; Rodríguez, Alexandra; Siebe, Christina; Teixido, Alberto L; Casado-Coy, Nuria; et al (2023). Soil contamination in nearby natural areas mirrors that in urban greenspaces worldwide. Nature Communications, 14(1):1706.
  • McLaughlin, Sarah; Zhalnina, Kateryna; Kosina, Suzanne; Northen, Trent R; Sasse, Joelle (2023). The core metabolome and root exudation dynamics of three phylogenetically distinct plant species. Nature Communications, 14(1):1649.
  • Li, Xia; Zhao, Ruotong; Li, Dandan; Wang, Guangzhou; Bei, Shuikuan; Ju, Xiaotang; An, Ran; Li, Long; Kuyper, Thomas W; Christie, Peter; Bender, Franz S; Veen, Ciska; van der Heijden, Marcel G A; van der Putten, Wim H; Zhang, Fusuo; Butterbach-Bahl, Klaus; Zhang, Junling (2023). Mycorrhiza-mediated recruitment of complete denitrifying Pseudomonas reduces N$_{2}$O emissions from soil.. Microbiome, 11(1):45.
  • Bellés-Sancho, Paula; Beukes, Chrizelle; James, Euan K; Pessi, Gabriella (2023). Nitrogen-Fixing Symbiotic Paraburkholderia Species: Current Knowledge and Future Perspectives. Nitrogen, 4(1):135-158.
  • Frangedakis, Eftychios; Marron, Alan O; Waller, Manuel; Neubauer, Anna; Tse, Sze Wai; Yue, Yuling; Ruaud, Stéphanie; Waser, Lucas; Sakakibara, Keiko; Szövényi, Péter (2023). What can hornworts teach us?. Frontiers in Plant Science, 14:1108027.
  • Chu, Jiashu; Monte, Isabel; DeFalco, Thomas A; Köster, Philipp; Derbyshire, Paul; Menke, Frank L H; Zipfel, Cyril (2023). Conservation of the PBL-RBOH immune module in land plants. Current Biology, 33(6):1130-1137.e5.
  • Poretti, Manuel; Praz, Coraline R; Sotiropoulos, Alexandros G; Wicker, Thomas (2023). A survey of lineage-specific genes in Triticeae reveals de novo gene evolution from genomic raw material. Plant Direct, 7(3):e484.
  • Desnoyer, Nicholas J; Grossniklaus, Ueli (2023). Live Imaging of Arabidopsis Pollen Tube Reception and Double Fertilization Using the Semi-In Vitro Cum Septum Method. Journal of Visualized Experiments, (192):online.
  • Kunz, Lukas; Sotiropoulos, Alexandros G; Graf, Johannes; Razavi, Mohammad; Keller, Beat; Müller, Marion C (2023). The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen. BMC Biology, 21(1):29.
  • Ngugi, David Kamanda; Salcher, Michaela M; Andrei, Adrian-Stefan; Ghai, Rohit; Klotz, Franziska; Chiriac, Maria-Cecilia; Ionescu, Danny; Büsing, Petra; Grossart, Hans-Peter; Xing, Peng; Priscu, John C; Alymkulov, Salmor; Pester, Michael (2023). Postglacial adaptations enabled colonization and quasi-clonal dispersal of ammonia-oxidizing archaea in modern European large lakes. Science Advances, 9(5):eadc9392.
  • Aerni, Philipp (2023). COP-27: A great opportunity to address the double crisis of food security and climate change–and for the EU to re-align its farm to fork strategy. Frontiers in Environmental Economics, 1:1082869.
  • Wang, Qian; Aliaga Fandino, A Cecilia; Graeff, Moritz; DeFalco, Thomas A; Zipfel, Cyril; Hardtke, Christian S (2023). A phosphoinositide hub connects CLE peptide signaling and polar auxin efflux regulation. Nature Communications, 14(1):423.
  • Aubry, Sylvain (2023). Genebanking plant genetic resources in the postgenomic era. Agriculture and Human Values, 40(3):961-971.
  • Hurst, Charlotte H; Turnbull, Dionne; Xhelilaj, Kaltra; Myles, Sally; Pflughaupt, Robin L; Kopischke, Michaela; Davies, Paul; Jones, Susan; Robatzek, Silke; Zipfel, Cyril; Gronnier, Julien; Hemsley, Piers A (2023). S-acylation stabilizes ligand-induced receptor kinase complex formation during plant pattern-triggered immune signalling. bioRxiv 457756, University of Zurich.
  • Straub, Hervé; Zuber, Flavia; Eberl, Leo; Maniura-Weber, Katharina; Ren, Qun (2023). In Situ Investigation of Pseudomonas aeruginosa Biofilm Development: Interplay between Flow, Growth Medium, and Mechanical Properties of Substrate. ACS applied materials & interfaces, 15(2):2781-2791.
  • Eberl, Leo (2023). Rehabilitation of the ‘bad guys’ for biocontrol applications. Environmental Microbiology, 25(1):97-101.
  • Banerjee, Samiran; van der Heijden, Marcel G A (2023). Soil microbiomes and one health. Nature Reviews. Microbiology, 21(1):6-20.
  • Mattmann, Ove. Experimental Evolution of Escherichia coli using the predatory bacterium Bdellovibrio bacteriovorus. 2023, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Vukovic, Dijana (2023). Unsichtbare Netzwerke – Ein Blick in die Komplexe Welt der Bodenorganismen. ANG-Fokus:52-57.
  • Perseus, Lena. Investigating diurnal changes in the chromatin organization of A. thaliana and the involvement of linker histone H1.. 2023, University of Zurich, Faculty of Science.
  • Knapp, Deborah; Posch, Thomas (2023). Veränderung der N:P-Verhältnisse in Seen: Mögliche Konsequenzen auf die Nahrungsnetze. Aqua & Gas, 103(6):72-79.
  • Mühlenbeck, Henning; Tsutsui, Yuko; Lemmon, Mark A; Bender, Kyle W; Zipfel, Cyril (2023). Allosteric activation of the co-receptor BAK1 by the EFR receptor kinase initiates immune signaling. eLife:online.
  • Wen, Ying; Chairattanawat, Chayanee; Vo, Kieu Thi Xuan; Liu, Jiayou; Zhang, Jie; Pan, Ting; Kim, Do-Young; Martinoia, Enrico; Zhong, Chun-Yan; Wang, Mao-Hui; Jeon, Jong-Seong; Song, Won-Yong (2023). VOZ1 and VOZ2 transcription factors regulate arsenic tolerance and distribution in rice and Arabidopsis. Frontiers in Plant Science, 14:1209860.
  • Adero, Mark; Tripathi, Jaindra Nath; Oduor, Richard; Zipfel, Cyril; Tripathi, Leena (2023). Transgenic expression of Arabidopsis ELONGATION FACTOR-TU RECEPTOR (AtEFR) gene in banana enhances resistance against Xanthomonas campestris pv. musacearum. PLoS ONE, 18(9):online.
  • Pramanik, Dewi; Becker, Annette; Roessner, Clemens; Rupp, Oliver; Bogarín, Diego; Pérez-Escobar, Oscar Alejandro; Dirks-Mulder, Anita; Droppert, Kevin; Kocyan, Alexander; Smets, Erik; Gravendeel, Barbara (2023). Evolution and development of fruits of Erycina pusilla and other orchid species. PLoS ONE, 18(10):e0286846.
  • Russo, Alessia. The genome assembly of Ophrys sphegodes to explore the genomic basis of rapid evolution in a mediterranean orchid. 2023, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Wiehlmann, Lutz; Klockgether, Jens; Hammerbacher, Anna-Silke; Salunkhe, Prabhakar; Horatzek, Sonja; Munder, Antje; Peilert, Janno Florian; Gulbins, Erich; Eberl, Leo; Tümmler, Burkhard (2023). A VirB4 ATPase of the mobile accessory genome orchestrates core genome-encoded features of physiology, metabolism, and virulence of Pseudomonas aeruginosa TBCF10839. Frontiers in Cellular and Infection Microbiology, 13:1234420.
  • Shilling, Rebecca Elizabeth. Inhibition of BerB within B. cenocepacia H111 single cells and its consequences on the macrolony. 2023, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Abarca Cifuentes, Alicia. Family-wide evaluation of Arabidopsis thaliana Rapid Alkanization Factor (RALF) peptides and their implication in immunity. 2023, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Lai, Ting F; Ford, Rhian M; Huwiler, Simona (2023). Advances in cellular and molecular predatory biology of Bdellovibrio bacteriovorus six decades after discovery. Frontiers in Microbiology, 14:1168709.
  • Li, Leilei; Kaufmann, Moritz; Makechemu, Moffat; Van Poucke, Christof; De Keyser, Ellen; Uyttendaele, Mieke; Zipfel, Cyril; Cottyn, Bart; Pothier, Joël F (2023). Assessment of transcriptional reprogramming of lettuce roots in response to chitin soil amendment. Frontiers in Plant Science, 14:1158068.
  • Ouedraogo, Inès; Lartaud, Marc; Baroux, Célia; Mosca, Gabriella; Delgado, Luciana; Leblanc, Oliver; Verdeil, Jean-Luc; Conéjéro, Geneviève; Autran, Daphné (2023). 3D cellular morphometrics of ovule primordium development in Zea mays reveal differential division and growth dynamics specifying megaspore mother cell singleness. Frontiers in Plant Science, 14:1174171.
  • Bellés-Sancho, Paula. Elucidation of the genetic determinants underlying Paraburkholderia phymatum's symbiotic ability and its high competitiveness in legume root infection. 2023, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Straub, Hervé Jean. Should I stay or should I flow: Pseudomonas aeruginosa biofilm formation under flow in a microfluidic platform. 2023, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Kavagutti, Vinicius S; Bulzu, Paul-Adrian; Chiriac, Cecilia M; Salcher, Michaela M; Mukherjee, Indranil; Shabarova, Tanja; Grujčić, Vesna; Mehrshad, Maliheh; Kasalický, Vojtěch; Andrei, Adrian-Stefan; Jezberová, Jitka; Seďa, Jaromir; Rychtecký, Pavel; Znachor, Petr; Šimek, Karel; Ghai, Rohit (2023). High-resolution metagenomic reconstruction of the freshwater spring bloom. Microbiome, 11:15.

• 2022

  • Randall, Ricardo S; Jourdain, Claire; Nowicka, Anna; et al; Panatta, Martina; Santoro, Raffaella; Routh, Devin; Baroux, Célia (2022). Image analysis workflows to reveal the spatial organization of cell nuclei and chromosomes. Nucleus, 13(1):277-299.
  • Schnyder, Anya; Eberl, Leo; Agnoli, Kirsty (2022). Investigating the Biocontrol Potential of the Natural Microbiota of the Apple Blossom. Microorganisms, 10(12):2480.
  • Dirren-Pitsch, Gianna; Bühler, Dominique; Salcher, Michaela M; Bassin, Barbara; Le Moigne, Alizée; Schuler, Martina; Pernthaler, Jakob; Posch, Thomas (2022). FISHing for ciliates: Catalyzed reporter deposition fluorescence in situ hybridization for the detection of planktonic freshwater ciliates. Frontiers in Microbiology, 13:1070232.
  • Honegger, Rosmarie (2022). Lichens and Their Allies Past and Present. In: Scott, Barry; Mesarich, Carl. Plant relationships : Fungal-Plant Interactions. Cham: Springer (Bücher), 133-183.
  • Eisenhauer, Nico; Bender, S Franz; Calderón‐Sanou, Irene; de Vries, Franciska T; Lembrechts, Jonas J; Thuiller, Wilfried; Wall, Diana H; Zeiss, Romy; Bahram, Mohammad; Beugnon, Rémy; Burton, Victoria J; Crowther, Thomas W; Delgado‐Baquerizo, Manuel; Geisen, Stefan; Kardol, Paul; Krashevska, Valentyna; Martínez‐Muñoz, Carlos A; Patoine, Guillaume; Seeber, Julia; Soudzilovskaia, Nadejda A; Steinwandter, Michael; Sünnemann, Marie; Sun, Xin; van der Heijden, Marcel G A; Guerra, Carlos A; Potapov, Anton (2022). Frontiers in soil ecology—Insights from the World Biodiversity Forum 2022. Journal of Sustainable Agriculture and Environment, 1(4):245-261.
  • Yu, Gang; Derkacheva, Maria; Rufian, Jose S; Brillada, Carla; Kowarschik, Kathrin; Jiang, Shushu; Derbyshire, Paul; Ma, Miaomiao; DeFalco, Thomas A; Morcillo, Rafael J L; Stransfeld, Lena; Wei, Yali; Zhou, Jian‐Min; Menke, Frank L H; Trujillo, Marco; Zipfel, Cyril; Macho, Alberto P (2022). The Arabidopsis E3 ubiquitin ligase PUB4 regulates BIK1 and is targeted by a bacterial type-III effector. The EMBO Journal, 41(23):e107257.
  • Sotiropoulos, Alexandros G; Arango-Isaza, Epifanía; Ban, Tomohiro; Barbieri, Chiara; Bourras, Salim; Cowger, Christina; Czembor, Paweł C; Ben-David, Roi; Dinoor, Amos; Ellwood, Simon R; Graf, Johannes; Hatta, Koichi; Helguera, Marcelo; Sánchez-Martín, Javier; McDonald, Bruce A; Morgounov, Alexey I; Müller, Marion C; Shamanin, Vladimir; Shimizu, Kentaro K; Yoshihira, Taiki; Zbinden, Helen; Keller, Beat; Wicker, Thomas (2022). Global genomic analyses of wheat powdery mildew reveal association of pathogen spread with historical human migration and trade. Nature Communications, 13(1):4315.
  • Fan, Li; Fröhlich, Katja; Melzer, Eric; Pruitt, Rory N; Albert, Isabell; Zhang, Lisha; Joe, Anna; Hua, Chenlei; Song, Yanyue; Albert, Markus; Kim, Sang-Tae; Weigel, Detlef; Zipfel, Cyril; Chae, Eunyoung; Gust, Andrea A; Nürnberger, Thorsten (2022). Genotyping-by-sequencing-based identification of Arabidopsis pattern recognition receptor RLP32 recognizing proteobacterial translation initiation factor IF1. Nature Communications, 13:1294.
  • Wuest, Samuel E; Pires, Nuno D; Luo, Shan; Vasseur, Francois; Messier, Julie; Grossniklaus, Ueli; Niklaus, Pascal A (2022). Increasing plant group productivity through latent genetic variation for cooperation. PLoS Biology, 20(11):e3001842.
  • Noble, Jennifer A; Bielski, Nicholas V; Liu, Ming-Che James; DeFalco, Thomas A; Stegmann, Martin; Nelson, Andrew D L; McNamara, Kara; Sullivan, Brooke; Dinh, Khanhlinh K; Khuu, Nicholas; Hancock, Sarah; Shiu, Shin-Han; Zipfel, Cyril; Cheung, Alice Y; Beilstein, Mark A; Palanivelu, Ravishankar (2022). Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization. Plant Physiology, 190(4):2539-2556.
  • Steiner, Elisabeth; Shilling, Rebecca E; Richter, Anja M; Schmid, Nadine; Fazli, Mustafa; Kaever, Volkhard; Jenal, Urs; Tolker-Nielsen, Tim; Eberl, Leo (2022). The BDSF quorum sensing receptor RpfR regulates Bep exopolysaccharide synthesis in Burkholderia cenocepacia via interaction with the transcriptional regulator BerB. npj Biofilms and Microbiomes, 8:93.
  • Ojosnegros, Sara; Alvarez, José Manuel; Grossmann, Jonas; Gagliardini, Valeria; Quintanilla, Luis G; Grossniklaus, Ueli; Fernández, Helena (2022). The Shared Proteome of the Apomictic Fern Dryopteris affinis ssp. affinis and Its Sexual Relative Dryopteris oreades. International Journal of Molecular Sciences, 23(22):14027.
  • Müller, Michelle Jessy; Dorst, Andrea; Paulus, Constanze; Khan, Imran; Sieber, Simon (2022). Catch-enrich-release approach for amine-containing natural products. Chemical Communications, 58(90):12560-12563.
  • Walder, Florian; Schmid, Marc W; Riedo, Judith; Valzano-Held, Alain Y; Banerjee, Samiran; Büchi, Lucie; Bucheli, Thomas D; van der Heijden, Marcel G A (2022). Soil microbiome signatures are associated with pesticide residues in arable landscapes. Soil Biology and Biochemistry, 174:108830.
  • Bulzu, Paul-Adrian; Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Ghai, Rohit (2022). The Evolutionary Kaleidoscope of Rhodopsins. mSystems, 7(5):e0040522.
  • Mauch, Emanuel; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Bacteroidota Lineage. Microbiology Resource Announcements, 11(10):e0076622.
  • Bernet, Julia; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Flavobacterium sp. Strain. Microbiology Resource Announcements, 11(10):e0065922.
  • Ajvazi, Xhesida; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Study of Complete Genome Sequence of Uncultivated Hyphomonadaceae sp.. Microbiology Resource Announcements, 11(10):e0076522.
  • Riedo, Judith; Herzog, Chantal; Banerjee, Samiran; Fenner, Kathrin; Walder, Florian; van der Heijden, Marcel G A; Bucheli, Thomas D (2022). Concerted Evaluation of Pesticides in Soils of Extensive Grassland Sites and Organic and Conventional Vegetable Fields Facilitates the Identification of Major Input Processes. Environmental Science & Technology, 56(19):13686-13695.
  • Liu, Yujie; Duarte, Gicele Silva; Sun, Qing; Gilgen, Anna Katarina; Wittwer, Raphael; van der Heijden, Marcel G A; Buchmann, Nina; Klaus, Valentin H (2022). Severe drought rather than cropping system determines litter decomposition in arable systems. Agriculture, Ecosystems & Environment, 338:108078.
  • Mecchia, Martin A; Rövekamp, Moritz; Giraldo-Fonseca, Alejandro; Meier, Dario; Gadient, Philippe; Vogler, Hannes; Limacher, Daria; Bowman, John L; Grossniklaus, Ueli (2022). The single Marchantia polymorpha FERONIA homolog reveals an ancestral role in regulating cellular expansion and integrity. Development, 149(19):dev200580.
  • Thieme, Michael; Brêchet, Arthur; Bourgeois, Yann; Keller, Bettina; Bucher, Etienne; Roulin, Anne C (2022). Experimentally heat‐induced transposition increases drought tolerance in Arabidopsis thaliana. New Phytologist, 236(1):182-194.
  • Alguacil, Maria del Mar; Schlaeppi, Klaus; López-García, Álvaro; van der Heijden, Marcel G A; Querejeta, José Ignacio (2022). Contrasting Responses of Arbuscular Mycorrhizal Fungal Families to Simulated Climate Warming and Drying in a Semiarid Shrubland. Microbial Ecology, 84(3):941-944.
  • Hasterok, Robert; Catalan, Pilar; Hazen, Samuel P; Roulin, Anne C; Vogel, John P; Wang, Kai; Mur, Luis A J (2022). Brachypodium: 20 years as a grass biology model system; the way forward?. Trends in Plant Science, 27(10):1002-1016.
  • Rhodes, Jack; Zipfel, Cyril; Jones, Jonathan D G; Ngou, Bruno Pok Man (2022). Concerted actions of PRR- and NLR-mediated immunity. Essays in biochemistry, 66(5):501-511.
  • Bellés-Sancho, Paula; Liu, Yilei; Heiniger, Benjamin; von Salis, Elia; Eberl, Leo; Ahrens, Christian H; Zamboni, Nicola; Bailly, Aurélien; Pessi, Gabriella (2022). A novel function of the key nitrogen-fixation activator NifA in beta-rhizobia: Repression of bacterial auxin synthesis during symbiosis. Frontiers in Plant Science, 13:991548.
  • Purtschert-Montenegro, Gabriela; Cárcamo-Oyarce, Gerardo; Pinto-Carbó, Marta; Agnoli, Kirsty; Bailly, Aurélien; Eberl, Leo (2022). Pseudomonas putida mediates bacterial killing, biofilm invasion and biocontrol with a type IVB secretion system. Nature Microbiology, 7(10):1547-1557.
  • Cremer, Franziska; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence from an Uncultivated Freshwater Elusimicrobiota Lineage. Microbiology Resource Announcements, 11(9):e0042622.
  • Zhu, Baoli; Karwautz, Clemens; Andrei, Adrian-Stefan; Klingl, Andreas; Pernthaler, Jakob; Lueders, Tillmann (2022). A novel Methylomirabilota methanotroph potentially couples methane oxidation to iodate reduction. mLife, 1(3):323-328.
  • Edlinger, Anna; Garland, Gina; Hartman, Kyle; Banerjee, Samiran; Degrune, Florine; García-Palacios, Pablo; Hallin, Sara; Valzano-Held, Alain; Herzog, Chantal; Jansa, Jan; Kost, Elena; Maestre, Fernando T; Pescador, David Sánchez; Philippot, Laurent; Rillig, Matthias C; Romdhane, Sana; Saghaï, Aurélien; Spor, Ayme; Frossard, Emmanuel; van der Heijden, Marcel G A (2022). Agricultural management and pesticide use reduce the functioning of beneficial plant symbionts. Nature Ecology and Evolution, 6(8):1145-1154.
  • Sakamoto, Takuya; Sakamoto, Yuki; Grob, Stefan; Slane, Daniel; Yamashita, Tomoe; Ito, Nanami; Oko, Yuka; Sugiyama, Tomoya; Higaki, Takumi; Hasezawa, Seiichiro; Tanaka, Maho; Matsui, Akihiro; Seki, Motoaki; Suzuki, Takamasa; Grossniklaus, Ueli; Matsunaga, Sachihiro (2022). Two-step regulation of centromere distribution by condensin II and the nuclear envelope proteins. Nature Plants, 8(8):940-953.
  • Cavallaro, Alessio; Rhoads, William J; Huwiler, Simona G; Stachler, Elyse; Hammes, Frederik (2022). Potential probiotic approaches to control Legionella in engineered aquatic ecosystems. FEMS Microbiology Ecology, 98(8):fiac071.
  • Müller, Marion C; Kunz, Lukas; Schudel, Seraina; Lawson, Aaron W; Kammerecker, Sandrine; Isaksson, Jonatan; Wyler, Michele; Graf, Johannes; Sotiropoulos, Alexandros G; Praz, Coraline R; Manser, Beatrice; Wicker, Thomas; Bourras, Salim; Keller, Beat (2022). Ancient variation of the AvrPm17 gene in powdery mildew limits the effectiveness of the introgressed rye Pm17 resistance gene in wheat. Proceedings of the National Academy of Sciences of the United States of America, 119(30):e2108808119.
  • Salomon, Matthias J; Watts-Williams, Stephanie J; McLaughlin, Michael J; Bücking, Heike; Singh, Brajesh K; Hutter, Imke; Schneider, Carolin; Martin, Francis M; Vosatka, Miroslav; Guo, Liangdong; Ezawa, Tatsuhiro; Saito, Masanori; Declerck, Stéphane; Zhu, Yong-Guan; Bowles, Timothy; Abbott, Lynette K; Smith, F Andrew; Cavagnaro, Timothy R; van der Heijden, Marcel G A (2022). Establishing a quality management framework for commercial inoculants containing arbuscular mycorrhizal fungi. iScience, 25(7):104636.
  • Liu, Shengen; García-Palacios, Pablo; Tedersoo, Leho; Guirado, Emilio; van der Heijden, Marcel G A; Wagg, Cameron; Chen, Dima; Wang, Qingkui; Wang, Juntao; Singh, Brajesh K; Delgado-Baquerizo, Manuel (2022). Phylotype diversity within soil fungal functional groups drives ecosystem stability. Nature Ecology and Evolution, 6(7):900-909.
  • Menardo, Fabrizio (2022). Understanding drivers of phylogenetic clustering and terminal branch lengths distribution in epidemics of Mycobacterium tuberculosis. eLife, 11:e76780.
  • Brecht, Sarah A; Kong, Xiang; Xia, Xin Rui; Shea, Damian; Nichols, Elizabeth Guthrie (2022). Non-target and suspect-screening analyses of hydroponic soybeans and passive samplers exposed to different watershed irrigation sources. Science of the Total Environment, 826:153754.
  • Köster, Philipp; DeFalco, Thomas A; Zipfel, Cyril (2022). Ca 2+ signals in plant immunity. The EMBO Journal, 41(12):e110741.
  • Yue, Zhi-Liang; Liu, Ning; Deng, Zhi-Ping; Zhang, Yu; Wu, Zhi-Ming; Zhao, Ji-Long; Sun, Ying; Wang, Zhi-Yong; Zhang, Sheng-Wei (2022). The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice. Current Biology, 32(11):2454-2466.e7.
  • Chiriac, Maria-Cecilia; Bulzu, Paul-Adrian; Andrei, Adrian-Stefan; Okazaki, Yusuke; Nakano, Shin-ichi; Haber, Markus; Kavagutti, Vinicius Silva; Layoun, Paul; Ghai, Rohit; Salcher, Michaela M (2022). Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR. Microbiome, 10(1):84.
  • Krattinger, Simon G; Keller, Beat (2022). Oat genome — sequence of a superfood. Nature Plants, 8(6):602-603.
  • Romero, Ferran; Cazzato, Sabrina; Walder, Florian; Vogelgsang, Susanne; Bender, S Franz; van der Heijden, Marcel G A (2022). Humidity and high temperature are important for predicting fungal disease outbreaks worldwide. New Phytologist, 234(5):1553-1556.
  • Rhodes, Jack; Roman, Andra-Octavia; Bjornson, Marta; Brandt, Benjamin; Derbyshire, Paul; Wyler, Michele; Schmid, Marc W; Menke, Frank L H; Santiago, Julia; Zipfel, Cyril (2022). Perception of a conserved family of plant signalling peptides by the receptor kinase HSL3. eLife, 11:e74687.
  • Posch, Thomas; Pitsch, Gianna; Bruni, Estelle P (2022). Protists: Ciliates. In: Reference Module in Earth Systems and Environmental Sciences. Amsterdam: Elsevier, 639-649.
  • Russo, Alessia; Mayjonade, Baptiste; Frei, Daniel; Potente, Giacomo; Kellenberger, Roman T; Frachon, Léa; Copetti, Dario; Studer, Bruno; Frey, Jürg E; Grossniklaus, Ueli; Schlüter, Philipp M (2022). Low-Input High-Molecular-Weight DNA Extraction for Long-Read Sequencing From Plants of Diverse Families. Frontiers in Plant Science, 13:883897.
  • Kim, Kyungyoon; Choi, Bae Young; Kang, Joohyun; Shim, Donghwan; Martinoia, Enrico; Lee, Youngsook (2022). Arabidopsis ABCG27 plays an essential role in flower and leaf development by modulating abscisic acid content. Physiologia Plantarum, 174(3):e13734.
  • Paszti, Sarah; Vitale, Alessandra; Liu, Yilei; Braunwalder, Rubina; Kalawong, Ratchara; Biner, Olivier; Pessi, Gabriella; Eberl, Leo (2022). Identification of Key Factors for Anoxic Survival of B. cenocepacia H111. International Journal of Molecular Sciences, 23(9):4560.
  • Krishna, Pilla Sankara; Woodcock, Stuart Daniel; Pfeilmeier, Sebastian; Bornemann, Stephen; Zipfel, Cyril; Malone, Jacob George (2022). Pseudomonas syringae addresses distinct environmental challenges during plant infection through the coordinated deployment of polysaccharides. Journal of Experimental Botany, 73(7):2206-2221.
  • Tatout, Christophe; Mougeot, Guillaume; Parry, Geraint; Baroux, Célia; Pradillo, Mónica; Evans, David (2022). The INDEPTH (Impact of Nuclear Domains on Gene Expression and Plant Traits) Academy: a community resource for plant science. Journal of Experimental Botany, 73(7):1926-1933.
  • Munglani, Gautam; Vogler, Hannes; Grossniklaus, Ueli (2022). Fast and flexible processing of large FRET image stacks using the FRET-IBRA toolkit. PLoS Computational Biology, 18(4):1009242.
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