Publications IPMB

ZORA Publication List

Publications

• 2022

  • Randall, Ricardo S; Jourdain, Claire; Nowicka, Anna; et al; Panatta, Martina; Santoro, Raffaella; Routh, Devin; Baroux, Célia (2022). Image analysis workflows to reveal the spatial organization of cell nuclei and chromosomes. Nucleus, 13(1):277-299.
  • Schnyder, Anya; Eberl, Leo; Agnoli, Kirsty (2022). Investigating the Biocontrol Potential of the Natural Microbiota of the Apple Blossom. Microorganisms, 10(12):2480.
  • Dirren-Pitsch, Gianna; Bühler, Dominique; Salcher, Michaela M; Bassin, Barbara; Le Moigne, Alizée; Schuler, Martina; Pernthaler, Jakob; Posch, Thomas (2022). FISHing for ciliates: Catalyzed reporter deposition fluorescence in situ hybridization for the detection of planktonic freshwater ciliates. Frontiers in Microbiology, 13:1070232.
  • Honegger, Rosmarie (2022). Lichens and Their Allies Past and Present. In: Scott, Barry; Mesarich, Carl. Plant relationships : Fungal-Plant Interactions. Cham: Springer (Bücher), 133-183.
  • Eisenhauer, Nico; Bender, S Franz; Calderón‐Sanou, Irene; de Vries, Franciska T; Lembrechts, Jonas J; Thuiller, Wilfried; Wall, Diana H; Zeiss, Romy; Bahram, Mohammad; Beugnon, Rémy; Burton, Victoria J; Crowther, Thomas W; Delgado‐Baquerizo, Manuel; Geisen, Stefan; Kardol, Paul; Krashevska, Valentyna; Martínez‐Muñoz, Carlos A; Patoine, Guillaume; Seeber, Julia; Soudzilovskaia, Nadejda A; Steinwandter, Michael; Sünnemann, Marie; Sun, Xin; van der Heijden, Marcel G A; Guerra, Carlos A; Potapov, Anton (2022). Frontiers in soil ecology—Insights from the World Biodiversity Forum 2022. Journal of Sustainable Agriculture and Environment, 1(4):245-261.
  • Yu, Gang; Derkacheva, Maria; Rufian, Jose S; Brillada, Carla; Kowarschik, Kathrin; Jiang, Shushu; Derbyshire, Paul; Ma, Miaomiao; DeFalco, Thomas A; Morcillo, Rafael J L; Stransfeld, Lena; Wei, Yali; Zhou, Jian‐Min; Menke, Frank L H; Trujillo, Marco; Zipfel, Cyril; Macho, Alberto P (2022). The Arabidopsis E3 ubiquitin ligase PUB4 regulates BIK1 and is targeted by a bacterial type-III effector. The EMBO Journal, 41(23):e107257.
  • Sotiropoulos, Alexandros G; Arango-Isaza, Epifanía; Ban, Tomohiro; Barbieri, Chiara; Bourras, Salim; Cowger, Christina; Czembor, Paweł C; Ben-David, Roi; Dinoor, Amos; Ellwood, Simon R; Graf, Johannes; Hatta, Koichi; Helguera, Marcelo; Sánchez-Martín, Javier; McDonald, Bruce A; Morgounov, Alexey I; Müller, Marion C; Shamanin, Vladimir; Shimizu, Kentaro K; Yoshihira, Taiki; Zbinden, Helen; Keller, Beat; Wicker, Thomas (2022). Global genomic analyses of wheat powdery mildew reveal association of pathogen spread with historical human migration and trade. Nature Communications, 13(1):4315.
  • Fan, Li; Fröhlich, Katja; Melzer, Eric; Pruitt, Rory N; Albert, Isabell; Zhang, Lisha; Joe, Anna; Hua, Chenlei; Song, Yanyue; Albert, Markus; Kim, Sang-Tae; Weigel, Detlef; Zipfel, Cyril; Chae, Eunyoung; Gust, Andrea A; Nürnberger, Thorsten (2022). Genotyping-by-sequencing-based identification of Arabidopsis pattern recognition receptor RLP32 recognizing proteobacterial translation initiation factor IF1. Nature Communications, 13:1294.
  • Wuest, Samuel E; Pires, Nuno D; Luo, Shan; Vasseur, Francois; Messier, Julie; Grossniklaus, Ueli; Niklaus, Pascal A (2022). Increasing plant group productivity through latent genetic variation for cooperation. PLoS Biology, 20(11):e3001842.
  • Noble, Jennifer A; Bielski, Nicholas V; Liu, Ming-Che James; DeFalco, Thomas A; Stegmann, Martin; Nelson, Andrew D L; McNamara, Kara; Sullivan, Brooke; Dinh, Khanhlinh K; Khuu, Nicholas; Hancock, Sarah; Shiu, Shin-Han; Zipfel, Cyril; Cheung, Alice Y; Beilstein, Mark A; Palanivelu, Ravishankar (2022). Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization. Plant Physiology, 190(4):2539-2556.
  • Steiner, Elisabeth; Shilling, Rebecca E; Richter, Anja M; Schmid, Nadine; Fazli, Mustafa; Kaever, Volkhard; Jenal, Urs; Tolker-Nielsen, Tim; Eberl, Leo (2022). The BDSF quorum sensing receptor RpfR regulates Bep exopolysaccharide synthesis in Burkholderia cenocepacia via interaction with the transcriptional regulator BerB. npj Biofilms and Microbiomes, 8:93.
  • Ojosnegros, Sara; Alvarez, José Manuel; Grossmann, Jonas; Gagliardini, Valeria; Quintanilla, Luis G; Grossniklaus, Ueli; Fernández, Helena (2022). The Shared Proteome of the Apomictic Fern Dryopteris affinis ssp. affinis and Its Sexual Relative Dryopteris oreades. International Journal of Molecular Sciences, 23(22):14027.
  • Walder, Florian; Schmid, Marc W; Riedo, Judith; Valzano-Held, Alain Y; Banerjee, Samiran; Büchi, Lucie; Bucheli, Thomas D; van der Heijden, Marcel G A (2022). Soil microbiome signatures are associated with pesticide residues in arable landscapes. Soil Biology and Biochemistry, 174:108830.
  • Bulzu, Paul-Adrian; Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Ghai, Rohit (2022). The Evolutionary Kaleidoscope of Rhodopsins. mSystems, 7(5):e0040522.
  • Mauch, Emanuel; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Bacteroidota Lineage. Microbiology Resource Announcements, 11(10):e0076622.
  • Bernet, Julia; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence of an Uncultivated Freshwater Flavobacterium sp. Strain. Microbiology Resource Announcements, 11(10):e0065922.
  • Ajvazi, Xhesida; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Study of Complete Genome Sequence of Uncultivated Hyphomonadaceae sp.. Microbiology Resource Announcements, 11(10):e0076522.
  • Riedo, Judith; Herzog, Chantal; Banerjee, Samiran; Fenner, Kathrin; Walder, Florian; van der Heijden, Marcel G A; Bucheli, Thomas D (2022). Concerted Evaluation of Pesticides in Soils of Extensive Grassland Sites and Organic and Conventional Vegetable Fields Facilitates the Identification of Major Input Processes. Environmental Science & Technology, 56(19):13686-13695.
  • Liu, Yujie; Duarte, Gicele Silva; Sun, Qing; Gilgen, Anna Katarina; Wittwer, Raphael; van der Heijden, Marcel G A; Buchmann, Nina; Klaus, Valentin H (2022). Severe drought rather than cropping system determines litter decomposition in arable systems. Agriculture, Ecosystems & Environment, 338:108078.
  • Mecchia, Martin A; Rövekamp, Moritz; Giraldo-Fonseca, Alejandro; Meier, Dario; Gadient, Philippe; Vogler, Hannes; Limacher, Daria; Bowman, John L; Grossniklaus, Ueli (2022). The single Marchantia polymorpha FERONIA homolog reveals an ancestral role in regulating cellular expansion and integrity. Development, 149(19):dev200580.
  • Thieme, Michael; Brêchet, Arthur; Bourgeois, Yann; Keller, Bettina; Bucher, Etienne; Roulin, Anne C (2022). Experimentally heat‐induced transposition increases drought tolerance in Arabidopsis thaliana. New Phytologist, 236(1):182-194.
  • Alguacil, Maria del Mar; Schlaeppi, Klaus; López-García, Álvaro; van der Heijden, Marcel G A; Querejeta, José Ignacio (2022). Contrasting Responses of Arbuscular Mycorrhizal Fungal Families to Simulated Climate Warming and Drying in a Semiarid Shrubland. Microbial Ecology, 84(3):941-944.
  • Hasterok, Robert; Catalan, Pilar; Hazen, Samuel P; Roulin, Anne C; Vogel, John P; Wang, Kai; Mur, Luis A J (2022). Brachypodium: 20 years as a grass biology model system; the way forward?. Trends in Plant Science, 27(10):1002-1016.
  • Rhodes, Jack; Zipfel, Cyril; Jones, Jonathan D G; Ngou, Bruno Pok Man (2022). Concerted actions of PRR- and NLR-mediated immunity. Essays in biochemistry, 66(5):501-511.
  • Bellés-Sancho, Paula; Liu, Yilei; Heiniger, Benjamin; von Salis, Elia; Eberl, Leo; Ahrens, Christian H; Zamboni, Nicola; Bailly, Aurélien; Pessi, Gabriella (2022). A novel function of the key nitrogen-fixation activator NifA in beta-rhizobia: Repression of bacterial auxin synthesis during symbiosis. Frontiers in Plant Science, 13:991548.
  • Purtschert-Montenegro, Gabriela; Cárcamo-Oyarce, Gerardo; Pinto-Carbó, Marta; Agnoli, Kirsty; Bailly, Aurélien; Eberl, Leo (2022). Pseudomonas putida mediates bacterial killing, biofilm invasion and biocontrol with a type IVB secretion system. Nature Microbiology, 7(10):1547-1557.
  • Cremer, Franziska; Serra Moncadas, Lucas; Andrei, Adrian-Stefan (2022). Complete Genome Sequence from an Uncultivated Freshwater Elusimicrobiota Lineage. Microbiology Resource Announcements, 11(9):e0042622.
  • Zhu, Baoli; Karwautz, Clemens; Andrei, Adrian-Stefan; Klingl, Andreas; Pernthaler, Jakob; Lueders, Tillmann (2022). A novel Methylomirabilota methanotroph potentially couples methane oxidation to iodate reduction. mLife, 1(3):323-328.
  • Edlinger, Anna; Garland, Gina; Hartman, Kyle; Banerjee, Samiran; Degrune, Florine; García-Palacios, Pablo; Hallin, Sara; Valzano-Held, Alain; Herzog, Chantal; Jansa, Jan; Kost, Elena; Maestre, Fernando T; Pescador, David Sánchez; Philippot, Laurent; Rillig, Matthias C; Romdhane, Sana; Saghaï, Aurélien; Spor, Ayme; Frossard, Emmanuel; van der Heijden, Marcel G A (2022). Agricultural management and pesticide use reduce the functioning of beneficial plant symbionts. Nature Ecology and Evolution, 6(8):1145-1154.
  • Sakamoto, Takuya; Sakamoto, Yuki; Grob, Stefan; Slane, Daniel; Yamashita, Tomoe; Ito, Nanami; Oko, Yuka; Sugiyama, Tomoya; Higaki, Takumi; Hasezawa, Seiichiro; Tanaka, Maho; Matsui, Akihiro; Seki, Motoaki; Suzuki, Takamasa; Grossniklaus, Ueli; Matsunaga, Sachihiro (2022). Two-step regulation of centromere distribution by condensin II and the nuclear envelope proteins. Nature Plants, 8(8):940-953.
  • Cavallaro, Alessio; Rhoads, William J; Huwiler, Simona G; Stachler, Elyse; Hammes, Frederik (2022). Potential probiotic approaches to control Legionella in engineered aquatic ecosystems. FEMS Microbiology Ecology, 98(8):fiac071.
  • Müller, Marion C; Kunz, Lukas; Schudel, Seraina; Lawson, Aaron W; Kammerecker, Sandrine; Isaksson, Jonatan; Wyler, Michele; Graf, Johannes; Sotiropoulos, Alexandros G; Praz, Coraline R; Manser, Beatrice; Wicker, Thomas; Bourras, Salim; Keller, Beat (2022). Ancient variation of the AvrPm17 gene in powdery mildew limits the effectiveness of the introgressed rye Pm17 resistance gene in wheat. Proceedings of the National Academy of Sciences of the United States of America, 119(30):e2108808119.
  • Salomon, Matthias J; Watts-Williams, Stephanie J; McLaughlin, Michael J; Bücking, Heike; Singh, Brajesh K; Hutter, Imke; Schneider, Carolin; Martin, Francis M; Vosatka, Miroslav; Guo, Liangdong; Ezawa, Tatsuhiro; Saito, Masanori; Declerck, Stéphane; Zhu, Yong-Guan; Bowles, Timothy; Abbott, Lynette K; Smith, F Andrew; Cavagnaro, Timothy R; van der Heijden, Marcel G A (2022). Establishing a quality management framework for commercial inoculants containing arbuscular mycorrhizal fungi. iScience, 25(7):104636.
  • Liu, Shengen; García-Palacios, Pablo; Tedersoo, Leho; Guirado, Emilio; van der Heijden, Marcel G A; Wagg, Cameron; Chen, Dima; Wang, Qingkui; Wang, Juntao; Singh, Brajesh K; Delgado-Baquerizo, Manuel (2022). Phylotype diversity within soil fungal functional groups drives ecosystem stability. Nature Ecology and Evolution, 6(7):900-909.
  • Menardo, Fabrizio (2022). Understanding drivers of phylogenetic clustering and terminal branch lengths distribution in epidemics of Mycobacterium tuberculosis. eLife, 11:e76780.
  • Köster, Philipp; DeFalco, Thomas A; Zipfel, Cyril (2022). Ca 2+ signals in plant immunity. The EMBO Journal, 41(12):e110741.
  • Yue, Zhi-Liang; Liu, Ning; Deng, Zhi-Ping; Zhang, Yu; Wu, Zhi-Ming; Zhao, Ji-Long; Sun, Ying; Wang, Zhi-Yong; Zhang, Sheng-Wei (2022). The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice. Current Biology, 32(11):2454-2466.e7.
  • Chiriac, Maria-Cecilia; Bulzu, Paul-Adrian; Andrei, Adrian-Stefan; Okazaki, Yusuke; Nakano, Shin-ichi; Haber, Markus; Kavagutti, Vinicius Silva; Layoun, Paul; Ghai, Rohit; Salcher, Michaela M (2022). Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR. Microbiome, 10(1):84.
  • Krattinger, Simon G; Keller, Beat (2022). Oat genome — sequence of a superfood. Nature Plants, 8(6):602-603.
  • Romero, Ferran; Cazzato, Sabrina; Walder, Florian; Vogelgsang, Susanne; Bender, S Franz; van der Heijden, Marcel G A (2022). Humidity and high temperature are important for predicting fungal disease outbreaks worldwide. New Phytologist, 234(5):1553-1556.
  • Rhodes, Jack; Roman, Andra-Octavia; Bjornson, Marta; Brandt, Benjamin; Derbyshire, Paul; Wyler, Michele; Schmid, Marc W; Menke, Frank L H; Santiago, Julia; Zipfel, Cyril (2022). Perception of a conserved family of plant signalling peptides by the receptor kinase HSL3. eLife, 11:e74687.
  • Posch, Thomas; Pitsch, Gianna; Bruni, Estelle P (2022). Protists: Ciliates. In: Reference Module in Earth Systems and Environmental Sciences. Amsterdam: Elsevier, 639-649.
  • Russo, Alessia; Mayjonade, Baptiste; Frei, Daniel; Potente, Giacomo; Kellenberger, Roman T; Frachon, Léa; Copetti, Dario; Studer, Bruno; Frey, Jürg E; Grossniklaus, Ueli; Schlüter, Philipp M (2022). Low-Input High-Molecular-Weight DNA Extraction for Long-Read Sequencing From Plants of Diverse Families. Frontiers in Plant Science, 13:883897.
  • Kim, Kyungyoon; Choi, Bae Young; Kang, Joohyun; Shim, Donghwan; Martinoia, Enrico; Lee, Youngsook (2022). Arabidopsis ABCG27 plays an essential role in flower and leaf development by modulating abscisic acid content. Physiologia Plantarum, 174(3):e13734.
  • Paszti, Sarah; Vitale, Alessandra; Liu, Yilei; Braunwalder, Rubina; Kalawong, Ratchara; Biner, Olivier; Pessi, Gabriella; Eberl, Leo (2022). Identification of Key Factors for Anoxic Survival of B. cenocepacia H111. International Journal of Molecular Sciences, 23(9):4560.
  • Krishna, Pilla Sankara; Woodcock, Stuart Daniel; Pfeilmeier, Sebastian; Bornemann, Stephen; Zipfel, Cyril; Malone, Jacob George (2022). Pseudomonas syringae addresses distinct environmental challenges during plant infection through the coordinated deployment of polysaccharides. Journal of Experimental Botany, 73(7):2206-2221.
  • Tatout, Christophe; Mougeot, Guillaume; Parry, Geraint; Baroux, Célia; Pradillo, Mónica; Evans, David (2022). The INDEPTH (Impact of Nuclear Domains on Gene Expression and Plant Traits) Academy: a community resource for plant science. Journal of Experimental Botany, 73(7):1926-1933.
  • Munglani, Gautam; Vogler, Hannes; Grossniklaus, Ueli (2022). Fast and flexible processing of large FRET image stacks using the FRET-IBRA toolkit. PLoS Computational Biology, 18(4):1009242.
  • Sun, Qing; Klaus, Valentin H; Wittwer, Raphaël; Liu, Yujie; van der Heijden, Marcel G A; Gilgen, Anna K; Buchmann, Nina (2022). Water uptake patterns of pea and barley responded to drought but not to cropping systems. Biogeosciences, 19(6):1853-1869.
  • DeFalco, Thomas A; Anne, Pauline; James, Sean R; Willoughby, Andrew C; Schwanke, Florian; Johanndrees, Oliver; Genolet, Yasmine; Derbyshire, Paul; Wang, Qian; Rana, Surbhi; Pullen, Anne-Marie; Menke, Frank L H; Zipfel, Cyril; Hardtke, Christian S; Nimchuk, Zachary L (2022). A conserved module regulates receptor kinase signalling in immunity and development. Nature Plants, 8(4):356-365.
  • Walker, Timothy M; Miotto, Paolo; Köser, Claudio U; Fowler, Philip W; Knaggs, Jeff; Iqbal, Zamin; Hunt, Martin; Chindelevitch, Leonid; Farhat, Maha R; Cirillo, Daniela Maria; Comas, Iñaki; Posey, James; Omar, Shaheed V; Peto, Timothy Ea; Suresh, Anita; Uplekar, Swapna; Laurent, Sacha; Colman, Rebecca E; Nathanson, Carl-Michael; Zignol, Matteo; Walker, Ann Sarah; CRyPTIC Consortium; Seq&Treat Consortium; Crook, Derrick W; Ismail, Nazir; Rodwell, Timothy C (2022). The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis. The Lancet Microbe, 3(4):e265-e273.
  • Secchi, Eleonora; Savorana, Giovanni; Vitale, Alessandra; Eberl, Leo; Stocker, Roman; Rusconi, Roberto (2022). The structural role of bacterial eDNA in the formation of biofilm streamers. Proceedings of the National Academy of Sciences of the United States of America, 119(12):e2113723119.
  • Yudina, Sophia V; Kocyan, Alexander; Truong, Ba Vuong; Vislobokov, Nikolay A; Lyskov, Dmitry F; Nuraliev, Maxim S; Remizowa, Margarita V (2022). Structure and Development of Flowers and Inflorescences in Burmannia (Burmanniaceae, Dioscoreales). Frontiers in Plant Science, 13:849276.
  • Bischof, Sylvain (2022). Bypassing reproductive barriers by chemical epimutagenesis. Plant Cell, 34(3):947-948.
  • Grossniklaus, Ueli. Gentechnikgesetz und wissenschaftliche Logik. In: NZZ, 243, 2 March 2022, 19.
  • Büchi, Lucie; Walder, Florian; Banerjee, Samiran; Colombi, Tino; van der Heijden, Marcel G A; Keller, Thomas; Charles, Raphaël; Six, Johan (2022). Pedoclimatic factors and management determine soil organic carbon and aggregation in farmer fields at a regional scale. Geoderma, 409:115632.
  • Schumacher, Isabel; Menghini, Damian; Ovinnikov, Serguei; Hauenstein, Mareike; Fankhauser, Niklaus; Zipfel, Cyril; Hörtensteiner, Stefan; Aubry, Sylvain (2022). Evolution of chlorophyll degradation is associated with plant transition to land. The Plant Journal, 109(6):1473-1488.
  • Sanchez‐Vera, Victoria; Landberg, Katarina; Lopez‐Obando, Mauricio; Thelander, Mattias; Lagercrantz, Ulf; Muñoz‐Viana, Rafael; Schmidt, Anja; Grossniklaus, Ueli; Sundberg, Eva (2022). The Physcomitrium patens egg cell expresses several distinct epigenetic components and utilizes homologues of BONOBO genes for cell specification. New Phytologist, 233(6):2614-2628.
  • Gaurav, Kumar; Arora, Sanu; Silva, Paula; et al; Sánchez-Martín, Javier; Widrig, Victoria; Keller, Beat (2022). Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement. Nature Biotechnology, 40(3):422-431.
  • Wicker, Thomas; Stritt, Christoph; Sotiropoulos, Alexandros G; Poretti, Manuel; Pozniak, Curtis J; Walkowiak, Sean; Gundlach, Heidrun; Stein, Nils (2022). Transposable Element Populations Shed Light on the Evolutionary History of Wheat and the Complex Co-Evolution of Autonomous and Non-Autonomous Retrotransposons. Advanced Genetics, 3(1):2100022.
  • Neubauer, Anne; Ruaud, Stéphanie; Waller, Manuel; Frangedakis, Eftychios; Li, Fay‐Wei; Nötzold, Svenja I; Wicke, Susann; Bailly, Aurélien; Szövényi, Péter (2022). Step‐by‐step protocol for the isolation and transient transformation of hornwort protoplasts. Applications in Plant Sciences:online.
  • Frantal, Daniela; Agatha, Sabine; Beisser, Daniela; Boenigk, Jens; Darienko, Tatyana; Dirren-Pitsch, Gianna; Filker, Sabine; Gruber, Michael; Kammerlander, Barbara; Nachbaur, Laura; Scheffel, Ulrike; Stoeck, Thorsten; Qian, Kuimei; Weißenbacher, Birgit; Pröschold, Thomas; Sonntag, Bettina (2022). Molecular Data Reveal a Cryptic Diversity in the Genus Urotricha (Alveolata, Ciliophora, Prostomatida), a Key Player in Freshwater Lakes, With Remarks on Morphology, Food Preferences, and Distribution. Frontiers in Microbiology, 12:787290.
  • Qiu, Qingyan; Bender, S Franz; Mgelwa, Abubakari Said; Hu, Yalin (2022). Arbuscular mycorrhizal fungi mitigate soil nitrogen and phosphorus losses: A meta-analysis. Science of the Total Environment, 807(Pt 1):150857.
  • Bender, S Franz (2022). Pulling the strings from underground? Soil biota and plant growth–defense tradeoffs. New Phytologist, 233(3):1015-1017.
  • Krauss, M; Wiesmeier, M; Don, A; Cuperus, F; Gattinger, A; Gruber, S; Haagsma, W K; Peigné, J; Palazzoli, M Chiodelli; Schulz, F; van der Heijden, Marcel G A; Vincent-Caboud, L; Wittwer, R A; Zikeli, S; Steffens, M (2022). Reduced tillage in organic farming affects soil organic carbon stocks in temperate Europe. Soil and Tillage Research, 216:105262.
  • Gualdi, Stefano; Agnoli, Kirsty; Vitale, Alessandra; Higgins, Steven; Eberl, Leo (2022). Identification of genes required for gold and silver tolerance in Burkholderia cenocepacia H111 by transposon sequencing. Environmental Microbiology, 24(2):737-751.
  • De Gruyter, Johan; Weedon, James T; Elst, Evelyne M; Geisen, Stefan; van der Heijden, Marcel G A; Verbruggen, Erik (2022). Arbuscular mycorrhizal inoculation and plant response strongly shape bacterial and eukaryotic soil community trajectories. Soil Biology and Biochemistry, 165:108524.
  • Hofer, Cyrill. Long-Read MinION data for microbial community analysis. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Gronnier, Julien; Franck, Christina Maria; Stegmann, Martin; DeFalco, Thomas A; Abarca, Alicia; von Arx, Michelle; Dünser, Kai; Lin, Wenwei; Yang, Zhenbiao; Kleine-Vehn, Jürgen; Ringli, Christoph; Zipfel, Cyril (2022). Regulation of immune receptor kinase plasma membrane nanoscale organization by a plant peptide hormone and its receptors. eLife, 22:e74162.
  • Grob, Stefan (2022). Tough Tissue Hi-C. In: Sexton, Tom. Spatial Genome Organization. New York: Springer, 35-50.
  • Dindas, Julian; DeFalco, Thomas A; Yu, Gang; Zhang, Lu; David, Pascale; Bjornson, Marta; Thibaud, Marie-Christine; Custódio, Valéria; Castrillo, Gabriel; Nussaume, Laurent; Macho, Alberto P; Zipfel, Cyril (2022). Direct inhibition of phosphate transport by immune signaling in Arabidopsis. Current Biology, 32(2):488-495.
  • Salomon, M J; Demarmels, R; Watts-Williams, S J; McLaughlin, M J; Kafle, A; Ketelsen, C; Soupir, A; Bücking, Heike; Cavagnaro, T R; van der Heijden, Marcel G A (2022). Global evaluation of commercial arbuscular mycorrhizal inoculants under greenhouse and field conditions. Applied Soil Ecology, 169:104225.
  • Stritt, Christoph; Gimmi, Elena L; Wyler, Michele; Bakali, Abdelmonaim H; Skalska, Aleksandra; Hasterok, Robert; Mur, Luis A J; Pecchioni, Nicola; Roulin, Anne C (2022). Migration without interbreeding: Evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes. Molecular Ecology, 31(1):70-85.
  • Saghaï, Aurélien; Banjeree, Samiran; Degrune, Florine; Edlinger, Anna; García‐Palacios, Pablo; Garland, Gina; van der Heijden, Marcel G A; Herzog, Chantal; Maestre, Fernando T; Pescador, David S; Philippot, Laurent; Rillig, Matthias C; Romdhane, Sana; Hallin, Sara (2022). Diversity of archaea and niche preferences among putative ammonia‐oxidizing Nitrososphaeria dominating across European arable soils. Environmental Microbiology, 24(1):341-356.
  • Wyler, Michele. The epigenetic impact of transposable elements on gene expression. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Herzog, Chantal. Impact of agricultural intensification on soil biogeochemistry and multifunctionality. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Sadriu Hoti, Adeline; Hasaj, Elmedina; Ibrahimi, Leonora; Heqimi, Sabina; Schneller, Jakob; Bachofen, Reinhard (2022). Drought stress, water table and photosynthetic activity of peat moss measured by fast fluorescence in alpine peatlands. Trends in Photochemistry & Photobiology, 21:41-54.
  • Kalawong, Ratchara. Influence of putisolvin on membrane vesicle and nanotube formation in Pseudomonas putida IsoF. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Sotiropoulos, Alexandros Georgios. Global population analyses of wheat powdery mildew using whole genome sequencing data. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Stirnemann, Eva Marina. Impaired ABCC5/ MRP5-mediated inositol hexakisphosphate transport and its effects in Arabidopsis thaliana. 2022, University of Zurich, Faculty of Science.
  • Gschwend, Florian. Next-generation soil quality monitoring : metabarcoding of soil bacterial and fungal communities for long-term soil quality monitoring. 2022, University of Zurich, Faculty of Science.
  • Riedo, Judith. Occurrence of pesticides in agricultural soils and their influence on beneficial soil microorganisms. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Toda, Misato. Soil microbes as regulators of nutrient cycling in agroecosystems. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Della Casa, Philippe; Carlevaro, Eva; Dufraisse, Alexa; Jacquat, Christiane; Sauerbier, Martin; Tinner, Willy; Vescovi, Elisa (2022). Dal proxy ambientale alla testimonianza archeologica: un approcio multidisciplinare alle storia del paesaggio e dell'insediamento nella Leventina (Ticino) e nella zona subalpina. Rivista di Scienze Preistoriche, 72(2):53-65.
  • Le Moigne, Alizée. Emergent complexity in microbial community assembly: insights from taxonomic and functional properties. 2022, University of Zurich, Faculty of Science.
  • Bühler, Dominique. FISHing for Ciliates - fluorescence in situ hybridization for the detection of planktonic freshwater ciliates. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Schumacher, Isabel Maria. Evolution of chlorophyll degradation in viridiplantae. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Manser, Beatrice. Molecular characterization of Avr function and plant recognition on the wheat powdery mildew effector AvrPm2. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Honegger, Rosmarie (2022). Die Entdeckung der Chloroplastenwanderung in Vallisneria und andere Trouvaillen aus dem Nachlass von Gustav Senn (1875–1945). Bauhinia, 28:63-74.
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