Publications IPMB

ZORA Publication List

Publications

• 2021

  • Müller, Marion C; Kunz, Lukas; Graf, Johannes; Schudel, Seraina; Keller, Beat (2021). Host Adaptation Through Hybridization: Genome Analysis of Triticale Powdery Mildew Reveals Unique Combination of Lineage-Specific Effectors. Molecular Plant-Microbe Interactions, 34(12):1350-1357.
  • Georgiou, Antri; Sieber, Simon; Hsiao, Chien-Chi; Grayfer, Tatyana; Gorenflos López, Jacob L; Gademann, Karl; Eberl, Leo; Bailly, Aurélien (2021). Leaf nodule endosymbiotic Burkholderia confer targeted allelopathy to their Psychotria hosts. Scientific Reports, 11:22465.
  • Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Burri, Jan T; Nelson, Bradley J; Grossniklaus, Ueli; Wittel, Falk K (2021). Correction to: Mechanical factors contributing to the Venus flytrap’s rate-dependent response to stimuli. Biomechanics and Modeling in Mechanobiology, 20(6):2299.
  • Mittelstrass, Jana; Sperone, F Gianluca; Horton, Matthew W (2021). Using transects to disentangle the environmental drivers of plant‐microbiome assembly. Plant, Cell & Environment, 44(12):3515-3525.
  • Piazza, Stefano; Campa, Manuela; Pompili, Valerio; Costa, Lorenza Dalla; Salvagnin, Umberto; Nekrasov, Vladimir; Zipfel, Cyril; Malnoy, Mickael (2021). The Arabidopsis pattern recognition receptor EFR enhances fire blight resistance in apple. Horticulture Research, 8:204.
  • Sailer, Christian; Tiberi, Simone; Schmid, Bernhard; Stöcklin, Jürg; Grossniklaus, Ueli (2021). Apomixis and genetic background affect distinct traits in Hieracium pilosella L. grown under competition. BMC Biology, 19:177.
  • Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Burri, Jan T; Nelson, Bradley J; Grossniklaus, Ueli; Wittel, Falk K (2021). Mechanical factors contributing to the Venus flytrap’s rate-dependent response to stimuli. Biomechanics and Modeling in Mechanobiology, 20(6):2287-2297.
  • Abrouk, Michael; Athiyannan, Naveenkumar; Müller, Thomas; Pailles, Yveline; Stritt, Christoph; Roulin, Anne C; Chu, Chenggen; Liu, Shuyu; Morita, Takumi; Handa, Hirokazu; Poland, Jesse; Keller, Beat; Krattinger, Simon G (2021). Population genomics and haplotype analysis in spelt and bread wheat identifies a gene regulating glume color. Communications Biology, 4:375.
  • Cadot, Selma; Guan, Hang; Bigalke, Moritz; Walser, Jean-Claude; Jander, Georg; Erb, Matthias; van der Heijden, Marcel G A; Schlaeppi, Klaus (2021). Specific and conserved patterns of microbiota-structuring by maize benzoxazinoids in the field. Microbiome, 9:103.
  • Pröschold, Thomas; Rieser, Daniel; Darienko, Tatyana; Nachbaur, Laura; Kammerlander, Barbara; Qian, Kuimei; Pitsch, Gianna; Bruni, Estelle Patricia; Qu, Zhishuai; Forster, Dominik; Rad-Menendez, Cecilia; Posch, Thomas; Stoeck, Thorsten; Sonntag, Bettina (2021). An integrative approach sheds new light onto the systematics and ecology of the widespread ciliate genus Coleps (Ciliophora, Prostomatea). Scientific Reports, 11:5916.
  • Gimeno, Alejandro; Stanley, Claire E; Ngamenie, Zacharie; Hsung, Ming-Hui; Walder, Florian; Schmieder, Stefanie S; Bindschedler, Saskia; Junier, Pilar; Keller, Beat; Vogelgsang, Susanne (2021). A versatile microfluidic platform measures hyphal interactions between Fusarium graminearum and Clonostachys rosea in real-time. Communications Biology, 4:262.
  • Kolodziej, Markus C; Singla, Jyoti; Sánchez-Martín, Javier; Zbinden, Helen; Šimková, Hana; Karafiátová, Miroslava; Doležel, Jaroslav; Gronnier, Julien; Poretti, Manuel; Glauser, Gaétan; Zhu, Wangsheng; Köster, Philipp; Zipfel, Cyril; Wicker, Thomas; Krattinger, Simon G; Keller, Beat (2021). A membrane-bound ankyrin repeat protein confers race-specific leaf rust disease resistance in wheat. Nature Communications, 12:956.
  • Rhodes, Jack; Yang, Huanjie; Moussu, Steven; Boutrot, Freddy; Santiago, Julia; Zipfel, Cyril (2021). Perception of a divergent family of phytocytokines by the Arabidopsis receptor kinase MIK2. Nature Communications, 12(1):705.
  • Fernández, Helena; Grossmann, Jonas; Gagliardini, Valeria; Feito, Isabel; Rivera, Alejandro; Rodríguez, Lucía; Quintanilla, Luis G; Quesada, Víctor; Cañal, María Jesús; Grossniklaus, Ueli (2021). Sexual and Apogamous Species of Woodferns Show Different Protein and Phytohormone Profiles. Frontiers in Plant Science, 12:718932.
  • Querejeta, José Ignacio; Schlaeppi, Klaus; López‐García, Álvaro; Ondoño, Sara; Prieto, Iván; van der Heijden, Marcel G A; del Mar Alguacil, María (2021). Lower relative abundance of ectomycorrhizal fungi under a warmer and drier climate is linked to enhanced soil organic matter decomposition. New Phytologist, 232(3):1399-1413.
  • Biała-Leonhard, Wanda; Zanin, Laura; Gottardi, Stefano; de Brito Francisco, Rita; Venuti, Silvia; Valentinuzzi, Fabio; Mimmo, Tanja; Cesco, Stefano; Bassin, Barbara; Martinoia, Enrico; Pinton, Roberto; Jasiński, Michał; Tomasi, Nicola (2021). Identification of an Isoflavonoid Transporter Required for the Nodule Establishment of the Rhizobium-Fabaceae Symbiotic Interaction. Frontiers in Plant Science, 12:758213.
  • Fernández Castro, Bieito; Bouffard, Damien; Troy, Cary; Ulloa, Hugo N; Piccolroaz, Sebastiano; Sepúlveda Steiner, Oscar; Chmiel, Hannah E; Serra Moncadas, Lucas; Lavanchy, Sébastien; Wüest, Alfred (2021). Seasonality modulates wind-driven mixing pathways in a large lake. Communications Earth & Environment, 2(1):215.
  • Abarca, Alicia; Franck, Christina Maria; Zipfel, Cyril (2021). Family-wide evaluation of RAPID ALKALINIZATION FACTOR peptides. Plant Physiology, 187(2):996-1010.
  • Krempaska, Natalia; Horňák, Karel; Silva, Marisa O D; Pernthaler, Jakob (2021). Spatial microheterogeneity and selective microbial consumption of dissolved free amino acids in an oligomesotrophic lake. Limnology and Oceanography, 66(10):3728-3739.
  • Banerjee, Samiran; Zhao, Cheng; Kirkby, Clive A; Coggins, Sam; Zhao, Shuai; Bissett, Andrew; van der Heijden, Marcel G A; Kirkegaard, John A; Richardson, Alan E (2021). Microbial interkingdom associations across soil depths reveal network connectivity and keystone taxa linked to soil fine-fraction carbon content. Agriculture, Ecosystems & Environment, 320:107559.
  • DeFalco, Thomas A; Zipfel, Cyril (2021). Molecular mechanisms of early plant pattern-triggered immune signaling (Corrections). Molecular Cell, 81(20):4346.
  • Säle, Verena; Palenzuela, Javier; Azcón-Aguilar, Concepción; Sánchez-Castro, Iván; da Silva, Gladstone Alves; Seitz, Benjamin; Sieverding, Ewald; van der Heijden, Marcel G A; Oehl, Fritz (2021). Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit. Mycorrhiza, 31(5):559-576.
  • Birch, Joanne L; Kocyan, Alexander (2021). Biogeography of the monocotyledon astelioid clade (Asparagales): A history of long-distance dispersal and diversification with emerging habitats. Molecular Phylogenetics and Evolution, 163:107203.
  • Poretti, Manuel; Sotiropoulos, Alexandros G; Graf, Johannes; Jung, Esther; Bourras, Salim; Krattinger, Simon G; Wicker, Thomas (2021). Comparative Transcriptome Analysis of Wheat Lines in the Field Reveals Multiple Essential Biochemical Pathways Suppressed by Obligate Pathogens. Frontiers in Plant Science, 12:720462.
  • Schellenberger, Romain; Crouzet, Jérôme; Nickzad, Arvin; Shu, Lin-Jie; Kutschera, Alexander; Gerster, Tim; Borie, Nicolas; Dawid, Corinna; Cloutier, Maude; Villaume, Sandra; Dhondt-Cordelier, Sandrine; Hubert, Jane; Cordelier, Sylvain; Mazeyrat-Gourbeyre, Florence; Schmid, Christian; Ongena, Marc; Renault, Jean-Hugues; Haudrechy, Arnaud; Hofmann, Thomas; Baillieul, Fabienne; Clément, Christophe; Zipfel, Cyril; Gauthier, Charles; Déziel, Eric; Ranf, Stefanie; Dorey, Stéphan (2021). Bacterial rhamnolipids and their 3-hydroxyalkanoate precursors activate Arabidopsis innate immunity through two independent mechanisms. Proceedings of the National Academy of Sciences of the United States of America, 118(39):e2101366118.
  • Bender, Kyle W; Couto, Daniel; Kadota, Yasuhiro; Macho, Alberto P; Sklenar, Jan; Derbyshire, Paul; Bjornson, Marta; DeFalco, Thomas A; Petriello, Annalise; Font Farre, Maria; Schwessinger, Benjamin; Ntoukakis, Vardis; Stransfeld, Lena; Jones, Alexandra M E; Menke, Frank L H; Zipfel, Cyril (2021). Activation loop phosphorylaton of a non-RD receptor kinase initiates plant innate immune signaling. Proceedings of the National Academy of Sciences of the United States of America, 118(38):e2108242118.
  • Oggenfuss, Ursula; Badet, Thomas; Wicker, Thomas; Hartmann, Fanny E; Singh, Nikhil Kumar; Abraham, Leen; Karisto, Petteri; Vonlanthen, Tiziana; Mundt, Christopher; McDonald, Bruce A; Croll, Daniel (2021). A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen. eLife, 10:e69249.
  • Sieber, Simon; Mathew, Anugraha; Jenul, Christian; Kohler, Tobias; Bär, Max; Carrión, Víctor J; Cazorla, Francisco M; Stalder, Urs; Hsieh, Ya-Chu; Bigler, Laurent; Eberl, Leo; Gademann, Karl (2021). Mitigation of Pseudomonas syringae virulence by signal inactivation. Science Advances, 7(37):eabg2293.
  • DeFalco, Thomas A; Zipfel, Cyril (2021). Molecular mechanisms of early plant pattern-triggered immune signaling. Molecular Cell, 81(17):3449-3467.
  • Yang, Bing; Banerjee, Samiran; Herzog, Chantal; Ramírez, Andrea Corona; Dahlin, Paul; van der Heijden, Marcel G A (2021). Impact of land use type and organic farming on the abundance, diversity, community composition and functional properties of soil nematode communities in vegetable farming. Agriculture, Ecosystems & Environment, 318:107488.
  • Bräunlich, Stephanie; Koller, Teresa; Glauser, Gaétan; Krattinger, Simon G; Keller, Beat (2021). Expression of the wheat disease resistance gene Lr34 in transgenic barley leads to accumulation of abscisic acid at the leaf tip. Plant Physiology and Biochemistry, 166:950-957.
  • Wong, Gerard C L; Antani, Jyot D; Lele, Pushkar P; Chen, Jing; et al; Carrara, Francesco; Stocker, Roman; Eberl, Leo (2021). Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation. Physical Biology, 18(5):051501.
  • Jia, Yangyang; van der Heijden, Marcel G A; Wagg, Cameron; Feng, Gu; Walder, Florian (2021). Symbiotic soil fungi enhance resistance and resilience of an experimental grassland to drought and nitrogen deposition. Journal of Ecology, 109(9):3171-3181.
  • Bischof, Sylvain (2021). An open EAR for polycomb repressive complexes. Plant Cell, 33(8):2517-2518.
  • Hosoya, Hiromi; Schaefer, Markus; Aerni, Philipp (2021). The Industrious City Urban Industry in the Digital Age. In: Hosoya, Hiromi; Schaefer, Markus. The Industrious City Urban Industry in the Digital Age. Zurich: Lars Müller Publishers, 105-115.
  • Ricroch, Agnes; Aerni, Philipp; Chopra, Surinder; Kuntz, Marcel (2021). Exploring the Roots of the Old GMO Narrative and Why Young People Have Started to Ask Critical Questions. In: Ricroch, Agnes; Chopra, Surinder; Kuntz, Marcel. Plant Biotechnology : Experience and Future Prospects. Cham: Springer, 277-304.
  • Aerni, Philipp. Mit stereotypem Denken in der Diskussion um den Stadt-Land-Graben verkennt man die komplexe Realität. In: NZZ, 27 August 2021, 21.
  • Knapp, Deborah; Fernández Castro, Bieito; Marty, Daniel; Loher, Eugen; Köster, Oliver; Wüest, Alfred; Posch, Thomas (2021). The Red Harmful Plague in Times of Climate Change: Blooms of the Cyanobacterium Planktothrix rubescens Triggered by Stratification Dynamics and Irradiance. Frontiers in Microbiology, 12:705914.
  • Florez-Rueda, Ana Marcela; Fiscalini, Flurin; Roth, Morgane; Grossniklaus, Ueli; Städler, Thomas (2021). Endosperm and Seed Transcriptomes Reveal Possible Roles for Small RNA Pathways in Wild Tomato Hybrid Seed Failure. Genome Biology and Evolution, 13(8):evab107.
  • Menghini, Damian; Aubry, Sylvain (2021). De novo transcriptome assembly data of the marine bioluminescent dinoflagellate Pyrocystis lunula. Data in Brief, 37:107254.
  • Butaitė, Elena; Kramer, Jos; Kümmerli, Rolf (2021). Local adaptation, geographical distance and phylogenetic relatedness: Assessing the drivers of siderophore‐mediated social interactions in natural bacterial communities. Journal of Evolutionary Biology, 34(8):1266-1278.
  • Riar, Amandeep K; Chhuneja, Parveen; Keller, Beat; Singh, Kuldeep (2021). Mechanism of leaf rust resistance in wheat wild relatives, Triticum monococcum L. and T. boeoticum L. Plant Genetic Resources, 19(4):320-327.
  • Stritt, Christoph; Thieme, Michael; Roulin, Anne C (2021). Rare transposable elements challenge the prevailing view of transposition dynamics in plants. American Journal of Botany, 108(8):1310-1314.
  • Georgieva, Maria; Heinonen, Tytti; Vitale, Alessandra; Hargraves, Simone; Causevic, Senka; Pillonel, Trestan; Eberl, Leo; Widmann, Christian; Jacquier, Nicolas (2021). Bacterial surface properties influence the activity of the TAT-RasGAP317-326 antimicrobial peptide. iScience, 24:102923.
  • Wittwer, Raphaël A; Bender, S Franz; Hartman, Kyle; Hydbom, Sofia; Lima, Ruy A A; Loaiza, Viviana; Nemecek, Thomas; Oehl, Fritz; Olsson, Pål Axel; Petchey, Owen; Prechsl, Ulrich E; Schlaeppi, Klaus; Scholten, Thomas; Seitz, Steffen; Six, Johan; van der Heijden, Marcel G A (2021). Organic and conservation agriculture promote ecosystem multifunctionality. Science Advances, 7(34):eabg6995.
  • Sánchez-Martín, Javier; Keller, Beat (2021). NLR immune receptors and diverse types of non-NLR proteins control race-specific resistance in Triticeae. Current Opinion in Plant Biology, 62:102053.
  • Qiu, Liping; Zhang, Qian; Zhu, Hansong; Reich, Peter B; Banerjee, Samiran; van der Heijden, Marcel G A; Sadowsky, Michael J; Ishii, Satoshi; Jia, Xiaoxu; Shao, Mingan; Liu, Baoyuan; Jiao, Huan; Li, Haiqiang; Wei, Xiaorong (2021). Erosion reduces soil microbial diversity, network complexity and multifunctionality. The ISME journal, 15(8):2474-2489.
  • Mühlenbeck, Henning; Bender, Kyle W; Zipfel, Cyril (2021). Importance of tyrosine phosphorylation for transmembrane signaling in plants. Biochemical Journal, 478(14):2759-2774.
  • Hug, Sebastian; Liu, Yilei; Heiniger, Benjamin; Bailly, Aurélien; Ahrens, Christian H; Eberl, Leo; Pessi, Gabriella (2021). Differential Expression of Paraburkholderia phymatum Type VI Secretion Systems (T6SS) Suggests a Role of T6SS-b in Early Symbiotic Interaction. Frontiers in Plant Science, 12:699590.
  • Mascher, Martin; Wicker, Thomas; Jenkins, Jerry; Plott, Christopher; Lux, Thomas; Koh, Chu Shin; Ens, Jennifer; Gundlach, Heidrun; Boston, Lori B; Tulpová, Zuzana; Holden, Samuel; Hernández-Pinzón, Inmaculada; Scholz, Uwe; Mayer, Klaus F X; Spannagl, Manuel; Pozniak, Curtis J; Sharpe, Andrew G; Šimková, Hana; Moscou, Matthew J; Grimwood, Jane; Schmutz, Jeremy; Stein, Nils (2021). Long-read sequence assembly: a technical evaluation in barley. Plant Cell, 33(6):1888-1906.
  • Bellés-Sancho, Paula; Lardi, Martina; Liu, Yilei; Eberl, Leo; Zamboni, Nicola; Bailly, Aurélien; Pessi, Gabriella (2021). Metabolomics and Dual RNA-Sequencing on Root Nodules Revealed New Cellular Functions Controlled by Paraburkholderia phymatum NifA. Metabolites, 11(7):455.
  • Bischof, Sylvain (2021). How did the soybean genome evolve?. Plant Cell, 33(5):1399-1400.
  • Mitre, Letícia Kuster; Teixeira‐Silva, Natália Sousa; Rybak, Katarzyna; Magalhães, Diogo Maciel; de Souza‐Neto, Reinaldo Rodrigues; Robatzek, Silke; Zipfel, Cyril; de Souza, Alessandra Alves (2021). The Arabidopsis immune receptor EFR increases resistance to the bacterial pathogens Xanthomonas and Xylella in transgenic sweet orange. Plant Biotechnology Journal, 19(7):1294-1296.
  • Simonini, Sara; Bemer, Marian; Bencivenga, Stefano; Gagliardini, Valeria; Pires, Nuno D; Desvoyes, Bénédicte; van der Graaff, Eric; Gutierrez, Crisanto; Grossniklaus, Ueli (2021). The Polycomb group protein MEDEA controls cell proliferation and embryonic patterning in Arabidopsis. Developmental Cell, 56(13):1945-1960.e7.
  • Cosme, Marco; Fernández, Iván; Declerck, Stéphane; van der Heijden, Marcel G A; Pieterse, Corné M J (2021). A coumarin exudation pathway mitigates arbuscular mycorrhizal incompatibility in Arabidopsis thaliana. Plant molecular biology, 106(4-5):319-334.
  • Aubry, Sylvain; Christ, Bastien; Kräutler, Bernhard; Martinoia, Enrico; Thomas, Howard; Zipfel, Cyril (2021). An evergreen mind and a heart for the colors of fall. Journal of Experimental Botany, 72(13):4625-4633.
  • Bjornson, Marta; Zipfel, Cyril (2021). Plant immunity: Crosstalk between plant immune receptors. Current Biology, 31(12):R796-R798.
  • Baroux, Célia (2021). Three-dimensional genome organization in epigenetic regulations: cause or consequence?. Current Opinion in Plant Biology, 61:102031.
  • Edited by: Aerni, Philipp; Stavridou, Marianthe; Schluep, Isabelle (2021). Basel: MDPI. Transitioning to Decent Work and Economic Growth.
  • Aerni, Philipp (2021). “Business as Part of the Solution”: SDG 8 Challenges textbook Views on Sustainable development". In: Aermi, Philipp; Stavridou, Marianthe; Schluep, Isabelle. Transitioning to Decent Work and Economic Growth. Basel, Switzerland: MPDI Books, 67-101.
  • Bischof, Sylvain (2021). Dissecting the response to photoperiod at the cell-type level. Plant Cell, 33(4):1083-1084.
  • Mannweiler, Olga; Pinto-Carbó, Marta; Lardi, Martina; Agnoli, Kirsty; Eberl, Leo (2021). Investigation of Burkholderia cepacia Complex Methylomes via Single-Molecule, Real-Time Sequencing and Mutant Analysis. Journal of Bacteriology, 203(12):00683-20.
  • Aerni, Philipp. Tierschutz und Ethik: Der Aktivismus ist zunehmend ineffektiv. In: NZZ.ch-Feuilleton, 13 May 2021, 1-10.
  • Hernandez-Lagana, Elvira; Mosca, Gabriella; Mendocilla-Sato, Ethel; Pires, Nuno; Frey, Anja; Giraldo-Fonseca, Alejandro; Michaud, Caroline; Grossniklaus, Ueli; Hamant, Olivier; Godin, Christophe; Boudaoud, Arezki; Grimanelli, Daniel; Autran, Daphné; Baroux, Célia (2021). Organ geometry channels reproductive cell fate in the Arabidopsis ovule primordium. eLife, 10:e66031.
  • Amrhein, Nikolaus; Martinoia, Enrico (2021). An ABC transporter of the ABCC subfamily localized at the plasma membrane confers glyphosate resistance. Proceedings of the National Academy of Sciences of the United States of America, 118(18):e2104746118.
  • Manser, Beatrice; Koller, Teresa; Praz, Coraline Rosalie; Roulin, Anne C; Zbinden, Helen; Arora, Sanu; Steuernagel, Burkhard; Wulff, Brande B H; Keller, Beat; Sánchez‐Martín, Javier (2021). Identification of specificity‐defining amino acids of the wheat immune receptor Pm2 and powdery mildew effector AvrPm2. The Plant Journal, 106(4):993-1007.
  • Bjornson, Marta; Pimprikar, Priya; Nürnberger, Thorsten; Zipfel, Cyril (2021). The transcriptional landscape of Arabidopsis thaliana pattern-triggered immunity. Nature Plants, 7(5):579-586.
  • Grubb, Lauren E; Derbyshire, Paul; Dunning, Katherine E; Zipfel, Cyril; Menke, Frank L H; Monaghan, Jacqueline (2021). Large-scale identification of ubiquitination sites on membrane-associated proteins in Arabidopsis thaliana seedlings. Plant Physiology, 185(4):1483-1488.
  • Fenn, Samuel; Dubern, Jean-Frédéric; Cigana, Cristina; De Simone, Maura; Lazenby, James; Juhas, Mario; Schwager, Stephan; Bianconi, Irene; Döring, Gerd; Elmsley, Jonas; Eberl, Leo; Williams, Paul; Bragonzi, Alessandra; Cámara, Miguel (2021). NirA is an alternative nitrite reductase from Pseudomonas aeruginosa with potential as an antivirulence target. mBio, 12(2):e00207-21.
  • Holmes, Danalyn R; Bredow, Melissa; Thor, Kathrin; Pascetta, Sydney A; Sementchoukova, Irina; Siegel, Kristen R; Zipfel, Cyril; Monaghan, Jacqueline (2021). A novel allele of the Arabidopsis thaliana MACPF protein CAD1 results in deregulated immune signaling. Genetics, 217(4):iyab022.
  • Aerni, Philipp (2021). Decentralized Economic Complexity in Switzerland and Its Contribution to Inclusive and Sustainable Change. Sustainability, 13(8):4181.
  • Bernal, Patricia; Eberl, Leo; de Jonge, Ronnie; Lepek, Viviana C; Malone, Jacob G (2021). Understanding plant–microorganism interactions to envision a future of sustainable agriculture. Environmental Microbiology, 23(4):1809-1811.
  • Yang, Ping; Scheuermann, Daniela; Kessel, Bettina; Koller, Teresa; Greenwood, Julian R; Hurni, Severine; Herren, Gerhard; Zhou, Shenghui; Marande, William; Wicker, Thomas; Krattinger, Simon G; Ouzunova, Milena; Keller, Beat (2021). Alleles of a wall‐associated kinase gene account for three of the major northern corn leaf blight resistance loci in maize. The Plant Journal, 106(2):526-535.
  • Rabanus-Wallace, M Timothy; Hackauf, Bernd; Mascher, Martin; Lux, Thomas; Wicker, Thomas; Gundlach, Heidrun; Baez, Mariana; Houben, Andreas; et al; Praz, Coraline R; Keller, Beat (2021). Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nature Genetics, 53(4):564-573.
  • Fernández Castro, Bieito; Sepúlveda Steiner, Oscar; Knapp, Deborah; Posch, Thomas; Bouffard, Damien; Wüest, Alfred (2021). Inhibited vertical mixing and seasonal persistence of a thin cyanobacterial layer in a stratified lake. Aquatic Sciences, 83:38.
  • Heredia‐Ponce, Zaira; Gutiérrez‐Barranquero, José Antonio; Purtschert‐Montenegro, Gabriela; Eberl, Leo; de Vicente, Antonio; Cazorla, Francisco M (2021). Role of extracellular matrix components in the formation of biofilms and their contribution to the biocontrol activity of Pseudomonas chlororaphis PCL1606. Environmental Microbiology, 23(4):2086-2101.
  • Aerni, Philipp (2021). The Ethics of Farm Animal Biotechnology from an Anthropological Perspective. Sustainability, 13:3674.
  • Shimizu, Kentaro K; Copetti, Dario; Okada, Moeko; Wicker, Thomas; Tameshige, Toshiaki; Hatakeyama, Masaomi; Shimizu-Inatsugi, Rie; Aquino, Catharine; et al (2021). De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium Resistance Genes in East Asian Genotypes. Plant & Cell Physiology, 62(1):8-27.
  • Wagg, Cameron; Hautier, Yann; Pellkofer, Sarah; Banerjee, Samiran; Schmid, Bernhard; van der Heijden, Marcel G A (2021). Diversity and asynchrony in soil microbial communities stabilizes ecosystem functioning. eLife, 10:e62813.
  • Schumacher, Isabel; Ndinyanka Fabrice, Tohnyui; Abdou, Marie-Therese; Kuhn, Benjamin M; Voxeur, Aline; Herger, Aline; Roffler, Stefan; Bigler, Laurent; Wicker, Thomas; Ringli, Christoph (2021). Defects in Cell Wall Differentiation of the Arabidopsis Mutant rol1-2 Is Dependent on Cyclin-Dependent Kinase CDK8. Cells, 10(3):685.
  • Desiderio, Francesca; Bourras, Salim; Mazzucotelli, Elisabetta; Rubiales, Diego; Keller, Beat; Cattivelli, Luigi; Valè, Giampiero (2021). Characterization of the resistance to powdery mildew and leaf rust carried by the bread wheat cultivar Victo. International Journal of Molecular Sciences, 22(6):3109.
  • Forster, Dominik; Qu, Zhishuai; Pitsch, Gianna; Bruni, Estelle P; Kammerlander, Barbara; Pröschold, Thomas; Sonntag, Bettina; Posch, Thomas; Stoeck, Thorsten (2021). Lake ecosystem robustness and resilience inferred from a climate-stressed protistan plankton network. Microorganisms, 9(2):549.
  • Riedo, Judith; Wettstein, Felix E; Rösch, Andrea; Herzog, Chantal; Banerjee, Samiran; Büchi, Lucie; Charles, Raphaël; Wächter, Daniel; Martin-Laurent, Fabrice; Bucheli, Thomas D; Walder, Florian; van der Heijden, Marcel G A (2021). Widespread occurrence of pesticides in organically managed agricultural soils - the ghost of a conventional agricultural past?. Environmental Science & Technology, 55(5):2919-2928.
  • Bodenhausen, Natacha; Deslandes-Hérold, Gabriel; Waelchli, Jan; Held, Alain; van der Heijden, Marcel G A; Schlaeppi, Klaus (2021). Relative qPCR to quantify colonization of plant roots by arbuscular mycorrhizal fungi. Mycorrhiza, 31(2):137-148.
  • Ursache, Robertas; De Jesus Vieira Teixeira, Cristovāo; Dénervaud Tendon, Valérie; Gully, Kay; De Bellis, Damien; Schmid-Siegert, Emanuel; Grube Andersen, Tonni; Shekhar, Vinay; Calderon, Sandra; Pradervand, Sylvain; Nawrath, Christiane; Geldner, Niko; Vermeer, Joop E M (2021). GDSL-domain proteins have key roles in suberin polymerization and degradation. Nature Plants, 7(3):353-364.
  • Vandenbussche, Ian; Sass, Andrea; Van Nieuwerburgh, Filip; Pinto-Carbó, Marta; Mannweiler, Olga; Eberl, Leo; Coenye, Tom (2021). Detection of cytosine methylation in Burkholderia cenocepacia by single-molecule real-time sequencing and whole-genome bisulfite sequencing. Microbiology, 167(3):001027.
  • Sánchez-Martín, Javier; Widrig, Victoria; Herren, Gerhard; Wicker, Thomas; Zbinden, Helen; Gronnier, Julien; Spörri, Laurin; Praz, Coraline R; Heuberger, Matthias; Kolodziej, Markus C; Isaksson, Jonatan; Steuernagel, Burkhard; Karafiátová, Miroslava; Doležel, Jaroslav; Zipfel, Cyril; Keller, Beat (2021). Wheat Pm4 resistance to powdery mildew is controlled by alternative splice variants encoding chimeric proteins. Nature Plants, 7(3):327-341.
  • Hewitt, Tim; Müller, Marion C; Molnár, István; Mascher, Martin; Holušová, Kateřina; Šimková, Hana; Kunz, Lukas; Zhang, Jianping; Li, Jianbo; Bhatt, Dhara; Sharma, Raghvendra; Schudel, Seraina; Yu, Guotai; Steuernagel, Burkhard; Periyannan, Sambasivam; Wulff, Brande; Ayliffe, Mick; McIntosh, Robert; Keller, Beat; Lagudah, Evans; Zhang, Peng (2021). A highly differentiated region of wheat chromosome 7AL encodes a Pm1a immune receptor that recognizes its corresponding AvrPm1a effector from Blumeria graminis. New Phytologist, 229(5):2812-2826.
  • Cakir, Benjamin; Aerni, Philipp; Schluep, Isabelle; Cakir, Isa (2021). 'Amalgamation of Export with Import Information: The Economic Complexity Index as a Coherent Driver of Sustainability’. Sustainability, 13(4/2049):1-71.
  • Qu, Zhishuai; Forster, Dominik; Bruni, Estelle P; Frantal, Daniela; Kammerlander, Barbara; Nachbaur, Laura; Pitsch, Gianna; Posch, Thomas; Pröschold, Thomas; Teubner, Katrin; Sonntag, Bettina; Stoeck, Thorsten (2021). Aquatic food webs in deep temperate lakes: Key species establish through their autecological versatility. Molecular Ecology, 30(4):1053-1071.
  • Hirte, Juliane; Walder, Florian; Hess, Julia; Büchi, Lucie; Colombi, Tino; van der Heijden, Marcel G; Mayer, Jochen (2021). Enhanced root carbon allocation through organic farming is restricted to topsoils. Science of the Total Environment, 755:143551.
  • Garland, Gina; Banerjee, Samiran; Edlinger, Anna; Miranda Oliveira, Emily; Herzog, Chantal; Wittwer, Raphaël; Philippot, Laurent; Maestre, Fernando T; van der Heijden, Marcel G A (2021). A closer look at the functions behind ecosystem multifunctionality: A review. Journal of Ecology, 109(2):600-613.
  • Edited by: Paro, Renato; Grossniklaus, Ueli; Santoro, Raffaella; Wutz, Anton (2021). Cham, Schweiz: Springer Verlag. Introduction to Epigenetics.
  • Thieme, Michael; Roulin, Anne C (2021). Identification of Active Transposable Elements in Plants: The Mobilome-Seq Approach. In: Cho, Jungnam. Plant Transposable Elements. New York: Springer, 95-102.
  • Garland, Gina; Edlinger, Anna; Banerjee, Samiran; Degrune, Florine; García-Palacios, Pablo; Pescador, David Sánchez; Herzog, Chantal; Romdhane, Sana; Saghai, Aurélien; Spor, Ayme; Wagg, Cameron; Hallin, Sara; Maestre, Fernando T; Philippot, Laurent; Rillig, Matthias C; van der Heijden, Marcel G A (2021). Crop cover is more important than rotational diversity for soil multifunctionality and cereal yields in European cropping systems. Nature Food, 2(1):28-37.
  • Baricz, Andreea; Chiriac, Cecilia Maria; Andrei, Adrian-Stefan; Bulzu, Paul‐Adrian; Levei, Erika Andrea; Cadar, Oana; Battes, Karina Paula; Cîmpean, Mirela; Șenilă, Marin; Cristea, Adorján; Muntean, Vasile; Alexe, Mircea; Coman, Cristian; Szekeres, Edina Kriszta; Sicora, Cosmin Ionel; Ionescu, Artur; Blain, David; O'Neill, William Kenneth; Edwards, Jessica; Hallsworth, John Edward; Banciu, Horia Leonard (2021). Spatio-temporal insights into microbiology of the freshwater-to-hypersaline, oxic-hypoxic-euxinic waters of Ursu Lake. Environmental Microbiology, 23(7):3523-3540.
  • Durán‐Viseras, Ana; Andrei, Adrian-Stefan; Vera‐Gargallo, Blanca; Ghai, Rohit; Sánchez‐Porro, Cristina; Ventosa, Antonio (2021). Culturomics-based genomics sheds light on the ecology of the new haloarchaeal genus Halosegnis. Environmental Microbiology, 23(7):3418-3434.
  • Mujakić, Izabela; Andrei, Adrian-Stefan; Shabarova, Tanja; Fecskeová, Lívia Kolesár; Salcher, Michaela M; Piwosz, Kasia; Ghai, Rohit; Koblížek, Michal (2021). Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes. mSystems, 6(2):01241-20.
  • Bulzu, Paul-Adrian; Kavagutti, Vinicius Silva; Chiriac, Maria-Cecilia; Vavourakis, Charlotte D; Inoue, Keiichi; Kandori, Hideki; Andrei, Adrian-Stefan; Ghai, Rohit (2021). Heliorhodopsin Evolution Is Driven by Photosensory Promiscuity in Monoderms. mSphere, 6(6):e00661-21.
  • Nenadić, Milica; Vermeer, Joop E M (2021). Dynamic cytokinin signalling landscapes during lateral root formation in Arabidopsis. Quantitative Plant Biology, 2(21):e13.
  • Müller, Marion Claudia. Genomic and genetic analysis of host and cultivar adaption in the cereal powdery mildew pathosystem. 2021, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Edlinger, Anna Theresa. The impact of agricultural management on European soil ecosystems. 2021, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Cadot, Selma Florence. Plant root exudates shape the rizosphere microbiome and mediate context-specific plant-soil feedback. 2021, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Herger, Aline. Analysis of LRXs signaling complex and extensin domain function in Arabidopsis thaliana. 2021, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Poretti, Manuel. Comparative genomics and transcriptomics of Triticeae. 2021, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Bräunlich, Stephanie. Wheat disease resistance gene Lr34 and the role of abscisic acid. 2021, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Kolodziej, Markus C. The use of a high-quality genome from the Swiss winter wheat line ArinaLrFor: genomic structure and isolation of leaf rust resistance genes. 2021, University of Zurich, Faculty of Science.
  • Gualdi, Stefano. Identification of fitness determinants in Burkholderia cenocepacia H111 by transposon sequencing. 2021, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Kocyan, Alexander; Fatsea,, Stavroula; Burri, Christian; Kocyan, Sophia; Joshi, Jasmin (2021). Addendum to the Orchid Flora of the Island of Kythira (Greece). Journal Europäischer Orchideen, 53(1):3-18.
  • Shuka, Donald; Anxhela, Rredhi; Besimi, Gurra; Bachofen, Reinhard (2021). Photosynthetic activity of the lichen Xanthoria elegans in relation to the daily course of temperature and humidity, a field study in the Piora valley, Ticino, Switzerland. In: Pedruzzi, Raffaele; Bianconi, Filippo. Scienze alpine, la centralità di piora e del san gottardo. Bellinzona: Edizioni Centro Biologia Alpina di Piora, 73-84.
  • Alameti, Era; Cani, Megi; Nezaj, Melitjan; Selgjekaj, Ledi; Schneller, Jakob; Bachofen, Reinhard (2021). The diversity of ferns and lycopods in Val Piora and measurements of ecological and physiological indicators on two widely distributed fern species at two different sites. In: Pedruzzi, Raffaele; Bianconi, Filippo. Scienze alpine, la centralità di piora e del san gottardo. Bellinzona: Edizioni Centro Biologia Alpina di Piora, 53-72.
  • Stritt, Christoph; Roulin, Anne C (2021). Detecting Signatures of TE Polymorphisms in Short-Read Sequencing Data. In: Cho, Jungnam. Plant transposable elements. New York: Springer, 177-187.
  • Bellés-Sancho, Paula; Lardi, Martina; Liu, Yilei; Hug, Sebastian; Pinto-Carbó, Marta Adriana; Zamboni, Nicola; Pessi, Gabriella (2021). Paraburkholderia phymatum Homocitrate Synthase NifV Plays a Key Role for Nitrogenase Activity during Symbiosis with Papilionoids and in Free-Living Growth Conditions. Cells, 10(4):952.
  • Läubli, Nino F; Burri, Jan T; Marquard, Julian; Vogler, Hannes; Mosca, Gabriella; Vertti-Quintero, Nadia; Shamsudhin, Naveen; deMello, Andrew; Grossniklaus, Ueli; Ahmed, Daniel; Nelson, Bradley J (2021). 3D mechanical characterization of single cells and small organisms using acoustic manipulation and force microscopy. Nature Communications, 12:2583.
  • Knapp, Deborah; Posch, Thomas (2021). Burgunderblutalge im Zürichsee. Aqua & Gas, 101(4):14-21.

• 2020

  • Saikia, Eashan; Läubli, Nino F; Burri, Jan T; Rüggeberg, Markus; Schlepütz, Christian M; Vogler, Hannes; Burgert, Ingo; Herrmann, Hans J; Nelson, Bradley J; Grossniklaus, Ueli; Wittel, Falk K (2020). Kinematics governing mechanotransduction in the sensory hair of the Venus flytrap. International Journal of Molecular Sciences, 22:280.
  • Walkowiak, Sean; Gao, Liangliang; Monat, Cecile; et al; Kolodziej, Markus C; Copetti, Dario; Krattinger, Simon G; Keller, Beat; Wicker, Thomas; Halstead-Nussloch, Gwyneth; Paape, Timothy; Shimizu-Inatsugi, Rie; Shimizu, Kentaro K (2020). Multiple wheat genomes reveal global variation in modern breeding. Nature, 588(7837):277-283.
  • Steinbrenner, Adam D; Muñoz-Amatriaín, Maria; Chaparro, Antonio F; Aguilar-Venegas, Jessica Montserrat; Lo, Sassoum; Okuda, Satohiro; Glauser, Gaetan; Dongiovanni, Julien; Shi, Da; Hall, Marlo; Crubaugh, Daniel; Holton, Nicholas; Zipfel, Cyril; Abagyan, Ruben; Turlings, Ted C J; Close, Timothy J; Huffaker, Alisa; Schmelz, Eric A (2020). A receptor-like protein mediates plant immune responses to herbivore-associated molecular patterns. Proceedings of the National Academy of Sciences of the United States of America, 117(49):31510-31518.
  • Sailer, Christian; Stöcklin, Jürg; Grossniklaus, Ueli (2020). Dynamics of apomictic and sexual reproduction during primary succession on a glacier forefield in the Swiss Alps. Scientific Reports, 10:8269.
  • Secchi, Eleonora; Vitale, Alessandra; Miño, Gastón L; Kantsler, Vasily; Eberl, Leo; Rusconi, Roberto; Stocker, Roman (2020). The effect of flow on swimming bacteria controls the initial colonization of curved surfaces. Nature Communications, 11:2851.
  • Liu, Qikun; Bischof, Sylvain; Harris, C Jake; Zhong, Zhenhui; Zhan, Lingyu; Nguyen, Calvin; Rashoff, Andrew; Barshop, William D; Sun, Fei; Feng, Suhua; Potok, Magdalena; Gallego-Bartolome, Javier; Zhai, Jixian; Wohlschlegel, James A; Carey, Michael F; Long, Jeffrey A; Jacobsen, Steven E (2020). The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis. Nature Communications, 11:2798.
  • Abrouk, Michael; Ahmed, Hanin Ibrahim; Cubry, Philippe; Šimoníková, Denisa; Cauet, Stéphane; Pailles, Yveline; Bettgenhaeuser, Jan; Gapa, Liubov; Scarcelli, Nora; Couderc, Marie; Zekraoui, Leila; Kathiresan, Nagarajan; Čížková, Jana; Hřibová, Eva; Doležel, Jaroslav; Arribat, Sandrine; Bergès, Hélène; Wieringa, Jan J; Gueye, Mathieu; Kane, Ndjido A; Leclerc, Christian; Causse, Sandrine; Vancoppenolle, Sylvie; Billot, Claire; Wicker, Thomas; Vigouroux, Yves; Barnaud, Adeline; Krattinger, Simon G (2020). Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate. Nature Communications, 11(1):4488.
  • Thomas, Christoph; Aller, Stephen G; Beis, Konstantinos; Carpenter, Elisabeth P; et al; Martinoia, Enrico (2020). Structural and functional diversity calls for a new classification of ABC transporters. FEBS letters, 594(23):3767-3775.
  • Desnoyer, Nicholas; Palanivelu, Ravishankar (2020). Bridging the GAPs in plant reproduction: a comparison of plant and animal GPI-anchored proteins. Plant Reproduction, 33(3-4):129-142.
  • Desnoyer, Nicholas; Howard, Gregory; Jong, Emma; Palanivelu, Ravishankar (2020). AtPIG-S, a predicted Glycosylphosphatidylinositol Transamidase subunit, is critical for pollen tube growth in Arabidopsis. BMC Plant Biology, 20:380.
  • Hood, Stephanie E; Kofler, Xeniya V; Chen, Quiyu; Scott, Judah; Ortega, Jason; Lehmann, Michael (2020). Nuclear translocation ability of Lipin differentially affects gene expression and survival in fed and fasting Drosophila. Journal of Lipid Research, 61(12):1720-1732.
  • Tan, Shutang; Di Donato, Martin; Glanc, Matouš; Zhang, Xixi; Klíma, Petr; Liu, Jie; Bailly, Aurélien; Ferro, Noel; Petrášek, Jan; Geisler, Markus; Friml, Jiří (2020). Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated actin dynamics and auxin transport-mediated plant development. Cell Reports, 33(9):108463.
  • Heredia-Ponce, Zaira; Gutiérrez-Barranquero, Jose Antonio; Purtschert-Montenegro, Gabriela; Eberl, Leo; Cazorla, Francisco M; de Vicente, Antonio (2020). Biological role of EPS from Pseudomonas syringae pv. syringae UMAF0158 extracellular matrix, focusing on a Psl-like polysaccharide. npj Biofilms and Microbiomes, 6:875.
  • Straub, Hervé; Eberl, Leo; Zinn, Manfred; Rossi, René M; Maniura-Weber, Katharina; Ren, Qun (2020). A microfluidic platform for in situ investigation of biofilm formation and its treatment under controlled conditions. Journal of Nanobiotechnology, 18:166.
  • Kartal, Önder; Schmid, Marc W; Grossniklaus, Ueli (2020). Cell type-specific genome scans of DNA methylation divergence indicate an important role for transposable elements. Genome Biology, 21:172.
  • Silva, Marisa O D; Pernthaler, Jakob (2020). Biomass addition alters community assembly in ultrafiltration membrane biofilms. Scientific Reports, 10:11552.
  • Kato, Hiroaki; Onai, Kiyoshi; Abe, Akira; Shimizu, Motoki; Takagi, Hiroki; Tateda, Chika; Utsushi, Hiroe; Singkarabanit-Ogawa, Suthitar; Kitakura, Saeko; Ono, Erika; Zipfel, Cyril; Takano, Yoshitaka; Ishiura, Masahiro; Terauchi, Ryohei (2020). Lumi-Map, a real-time luciferase bioluminescence screen of mutants combined with MutMap, reveals Arabidopsis genes involved in PAMP-triggered immunity. Molecular Plant-Microbe Interactions, 33(12):1366-1380.
  • Wyler, Michele; Stritt, Christoph; Walser, Jean-Claude; Baroux, Célia; Roulin, Anne C (2020). Impact of transposable elements on methylation and gene expression across natural accessions of Brachypodium distachyon. Genome Biology and Evolution, 12(11):1994-2001.
  • Picart-Picolo, Ariadna; Grob, Stefan; Picault, Nathalie; Franek, Michal; Llauro, Christel; Halter, Thierry; Maier, Tom R; Jobet, Edouard; Descombin, Julie; Zhang, Panpan; Paramasivan, Vijayapalani; Baum, Thomas J; Navarro, Lionel; Dvořáčková, Martina; Mirouze, Marie; Pontvianne, Frédéric (2020). Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response. Genome Research, 30(11):1583-1592.
  • Tamburini, Giovanni; Bommarco, Riccardo; Wanger, Thomas Cherico; Kremen, Claire; van der Heijden, Marcel G A; Liebman, Matt; Hallin, Sara (2020). Agricultural diversification promotes multiple ecosystem services without compromising yield. Science Advances, 6(45):eaba1715.
  • Le Moigne, Alizée; Bartosiewicz, Maciej; Schaepman‐Strub, Gabriela; Abiven, Samuel; Pernthaler, Jakob (2020). The biogeochemical variability of Arctic thermokarst ponds is reflected by stochastic and niche‐driven microbial community assembly processes. Environmental Microbiology, 22(11):4847-4862.
  • Bjornson, Marta; Kajala, Kaisa; Zipfel, Cyril; Ding, Pingtao (2020). Low-cost and high-throughput RNA-seq library preparation for illumina sequencing from plant tissue. Bio-protocol, 10(20):e3799.
  • Šimek, Karel; Grujčić, Vesna; Mukherjee, Indranil; Kasalický, Vojtěch; Nedoma, Jiří; Posch, Thomas; Mehrshad, Maliheh; Salcher, Michaela M (2020). Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes. FEMS Microbiology Ecology, 96(10):fiaa121.
  • Stöckle, Dorothee; Vermeer, Joop E M (2020). Plant biology: journey to the center of the Casparian Strip. Current Biology, 30(20):R1273-R1275.
  • Thor, Kathrin; Jiang, Shushu; Michard, Erwan; George, Jeoffrey; Scherzer, Sönke; Huang, Shouguang; Dindas, Julian; Derbyshire, Paul; Leitão, Nuno; DeFalco, Thomas A; Köster, Philipp; Hunter, Kerri; Kimura, Sachie; Gronnier, Julien; Stransfeld, Lena; Kadota, Yasuhiro; Bücherl, Christoph A; Charpentier, Myriam; Wrzaczek, Michael; MacLean, Daniel; Oldroyd, Giles E D; Menke, Frank L H; Roelfsema, M Rob G; Hedrich, Rainer; Feijó, José; Zipfel, Cyril (2020). The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity. Nature, 585(7826):569-573.
  • Wittwer, Raphaël. Assessing and Improving the Multifunctionality of Swiss Arable Cropping Systems. 2020, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Skalska, Aleksandra; Stritt, Christoph; Wyler, Michele; Williams, Hefin W; Vickers, Martin; Han, Jiwan; Tuna, Metin; Savas Tuna, Gulsemin; Susek, Karolina; Swain, Martin; Wóycicki, Rafał K; Chaudhary, Saurabh; Corke, Fiona; Doonan, John H; Roulin, Anne C; Hasterok, Robert; Mur, Luis A J (2020). Genetic and methylome variation in Turkish Brachypodium distachyon accessions differentiate two geographically distinct subpopulations. International Journal of Molecular Sciences, 21(18):6700.
  • Vitale, Alessandra; Paszti, Sarah; Takahashi, Kohei; Toyofuku, Masanori; Pessi, Gabriella; Eberl, Leo (2020). Mapping of the denitrification pathway in Burkholderia thailandensis by genome-wide mutant profiling. Journal of Bacteriology, 202(23):00304-20.
  • Hao, Pengchao; Xia, Jian; Liu, Jie; Di Donato, Martin; Pakula, Konrad; Bailly, Aurélien; Jasinski, Michal; Geisler, Markus (2020). Auxin-transporting ABC transporters are defined by a conserved D/E-P motif regulated by a prolylisomerase. Journal of Biological Chemistry, 295(37):13094-13105.
  • Carbonnel, Samy; Das, Debatosh; Varshney, Kartikye; Kolodziej, Markus C; Villaécija-Aguilar, José A; Gutjahr, Caroline (2020). The karrikin signaling regulator SMAX1 controlsLotus japonicusroot and root hair development by suppressing ethylene biosynthesis. Proceedings of the National Academy of Sciences of the United States of America, 117(35):21757-21765.
  • Lindner, Stefan; Keller, Bettina; Singh, Simrat P; Hasenkamp, Zsuzsanna; Jung, Esther; Müller, Marion C; Bourras, Salim; Keller, Beat (2020). Single residues in the LRR domain of the wheat PM3A immune receptor can control the strength and the spectrum of the immune response. The Plant Journal, 104(1):200-214.
  • Gimeno, A; Kägi, A; Drakopoulos, D; Bänziger, I; Lehmann, E; Forrer, H‐R; Keller, Beat; Vogelgsang, S (2020). From laboratory to the field: biological control of Fusarium graminearum on infected maize crop residues. Journal of applied microbiology, 129(3):680-694.
  • Stritt, Christoph; Wyler, Michele; Gimmi, Elena L; Pippel, Martin; Roulin, Anne C (2020). Diversity, dynamics and effects of long terminal repeat retrotransposons in the model grass Brachypodium distachyon. New Phytologist, 227(6):1736-1748.
  • Vandenbussche, Ian; Sass, Andrea; Pinto-Carbó, Marta; Mannweiler, Olga; Eberl, Leo; Coenye, Tom (2020). DNA methylation epigenetically regulates gene expression in Burkholderia cenocepacia and controls biofilm formation, cell aggregation, and motility. mSphere, 5(4):00455-20.
  • Rezzoagli, Chiara; Archetti, Martina; Mignot, Ingrid; Baumgartner, Michael; Kümmerli, Rolf (2020). Combining antibiotics with antivirulence compounds can have synergistic effects and reverse selection for antibiotic resistance in Pseudomonas aeruginosa. PLoS Biology, 18(8):e3000805.
  • Jullien, Pauline E; Grob, Stefan; Marchais, Antonin; Pumplin, Nathan; Chevalier, Clement; Bonnet, Diane M V; Otto, Caroline; Schott, Gregory; Voinnet, Olivier (2020). Functional characterization of Arabidopsis ARGONAUTE 3 in reproductive tissues. The Plant Journal, 103(5):1796-1809.
  • Bischof, Sylvain (2020). Which Factors Control Starch Granule Initiation?. Plant Cell, 32(8):2449-2450.
  • Gu, Shaohua; Wei, Zhong; Shao, Zhengying; Friman, Ville-Petri; Cao, Kehao; Yang, Tianjie; Kramer, Jos; Wang, Xiaofang; Li, Mei; Mei, Xinlan; Xu, Yangchun; Shen, Qirong; Kümmerli, Rolf; Jousset, Alexandre (2020). Competition for iron drives phytopathogen control by natural rhizosphere microbiomes. Nature Microbiology, 5(8):1002-1010.
  • Vitale, Alessandra; Pessi, Gabriella; Urfer, Matthias; Locher, Hans H; Zerbe, Katja; Obrecht, Daniel; Robinson, John A; Eberl, Leo (2020). Identification of genes required for resistance to peptidomimetic antibiotics by transposon sequencing. Frontiers in Microbiology, 11:1681.
  • Habjanič, Jelena; Mathew, Anugraha; Eberl, Leo; Freisinger, Eva (2020). Deciphering the Enigmatic Function of Pseudomonas Metallothioneins. Frontiers in Microbiology, 11:1709.
  • Liu, Yilei; Bellich, Barbara; Hug, Sebastian; Eberl, Leo; Cescutti, Paola; Pessi, Gabriella (2020). The exopolysaccharide Cepacian plays a role in the establishment of the Paraburkholderia phymatum – Phaseolus vulgaris symbiosis. Frontiers in Microbiology, 11:1600.
  • Zupunski, Andrea. Role of Protein N-glycosylation during the Pollen Tube Reception in Arabidopsis thaliana. 2020, University of Zurich, Faculty of Science.
  • Arribas-Hernández, Laura; Simonini, Sara; Hansen, Mathias Henning; Paredes, Esther Botterweg; Bressendorff, Simon; Dong, Yang; Østergaard, Lars; Brodersen, Peter (2020). Recurrent requirement for the m6A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis. Development, 147:dev189134.
  • Burri, Jan T; Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Wittel, Falk K; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Nelson, Bradley J; Grossniklaus, Ueli (2020). A single touch can provide sufficient mechanical stimulation to trigger Venus flytrap closure. PLoS Biology, 18(7):e3000740.
  • Sathe, Santosh; Kümmerli, Rolf (2020). Antagonistic interactions subdue inter‐species green‐beard cooperation in bacteria. Journal of Evolutionary Biology, 33:1245-1255.
  • Santos Fernandez, Gorka. The Acid Growth Theory: a Fundamental Concept Revisited. 2020, University of Zurich, Faculty of Science.
  • Monte, Isabel (2020). Plant Evolution: Divergent Plants, Divergent Functions for C1HDZ Orthologs. Current Biology, 30(14):R817-R819.
  • Oeyen, Jan Philip; Baa-Puyoulet, Patrice; Benoit, Joshua B; Beukeboom, Leo W; Bornberg-Bauer, Erich; Buttstedt, Anja; Calevro, Federica; Cash, Elizabeth I; Chao, Hsu; Charles, Hubert; et al; Sotiropoulos, Alexandros G; Niehuis, Oliver (2020). Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera. Genome Biology and Evolution, 12(7):1099-1188.
  • Bischof, Sylvain (2020). Remodeling Chromatin in an ARID environment. Plant Cell, 32(7):2063-2064.
  • Sasse, Joelle; Kosina, Suzanne M; de Raad, Markus; Jordan, Jacob S; Whiting, Katherine; Zhalnina, Kateryna; Northen, Trent R (2020). Root morphology and exudate availability are shaped by particle size and chemistry in Brachypodium distachyon. Plant Direct, 4(7):e00207.
  • Pontvianne, Frédéric; Grob, Stefan (2020). Three-dimensional nuclear organization in Arabidopsis thaliana. Journal of Plant Research, 133(4):479-488.
  • Tsutsui, Hiroki; Yanagisawa, Naoki; Kawakatsu, Yaichi; Ikematsu, Shuka; Sawai, Yu; Tabata, Ryo; Arata, Hideyuki; Higashiyama, Tetsuya; Notaguchi, Michitaka (2020). Micrografting device for testing systemic signaling in Arabidopsis. The Plant Journal, 103(2):918-929.
  • Herger, Aline; Gupta, Shibu; Kadler, Gabor; Franck, Christina Maria; Boisson-Dernier, Aurélien; Ringli, Christoph (2020). Overlapping functions and protein-protein interactions of LRR-extensins in Arabidopsis. PLoS Genetics, 16(6):e1008847.
  • Sieber, Simon; Daeppen, Christophe; Jenul, Christian; Mannancherril, Vidya; Eberl, Leo; Gademann, Karl (2020). Biosynthesis and Structure Activity Relationship Investigations of the Diazeniumdiolate Antifungal Agent Fragin. Chembiochem, 21(11):1587-1592.
  • Steuernagel, Burkhard; Witek, Kamil; Krattinger, Simon G; Ramirez-Gonzalez, Ricardo H; Schoonbeek, Henk-jan; Yu, Guotai; Baggs, Erin; Witek, Agnieszka I; Yadav, Inderjit; Krasileva, Ksenia V; Jones, Jonathan D G; Uauy, Cristobal; Keller, Beat; Ridout, Christopher J; Wulff, Brande B H (2020). The NLR-annotator tool enables annotation of the intracellular immune receptor repertoire. Plant Physiology, 183(2):468-482.
  • Tsuchimatsu, Takashi; Kakui, Hiroyuki; Yamazaki, Misako; Marona, Cindy; Tsutsui, Hiroki; Hedhly, Afif; Meng, Dazhe; Sato, Yutaka; Städler, Thomas; Grossniklaus, Ueli; Kanaoka, Masahiro M; Lenhard, Michael; Nordborg, Magnus; Shimizu, Kentaro K (2020). Adaptive Reduction of Male Gamete Number in the Selfing Plant Arabidopsis Thaliana. Nature Communications, 11:2885.
  • Gimeno, Alejandro. New Tools to Advance the Biological Control of Fusarium graminearum by the Antagonist Clonostachys rosea. 2020, University of Zurich, Faculty of Science.
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