Publications IPMB

ZORA Publication List

Publications

• 2019

  • Galindo‐Trigo, Sergio; Blanco‐Touriñán, Noel; DeFalco, Thomas A; Wells, Eloise S; Gray, Julie E; Zipfel, Cyril; Smith, Lisa M (2019). Cr RLK 1L receptor‐like kinases HERK 1 and ANJEA are female determinants of pollen tube reception. EMBO Reports:e48466.
  • Tsutsui, Hiroki; Yanagisawa, Naoki; Kawakatsu, Yaichi; Ikematsu, Shuka; Sawai, Yu; Tabata, Ryo; Arata, Hideyuki; Higashiyama, Tetsuya; Notaguchi, Michitaka (2019). Micrografting device for testing environmental conditions for grafting and systemic signaling in Arabidopsis. bioRxiv 885525, Cold Spring Harbor Laboratory.
  • Banerjee, Samiran; Schlaeppi, Klaus; van der Heijden, Marcel G A (2019). Reply to ‘Can we predict microbial keystones?’. Nature Reviews. Microbiology, 17(3):194.
  • Monat, Cécile; Padmarasu, Sudharsan; Lux, Thomas; Wicker, Thomas; Gundlach, Heidrun; Himmelbach, Axel; Ens, Jennifer; Li, Chengdao; Muehlbauer, Gary J; Schulman, Alan H; Waugh, Robbie; Braumann, Ilka; Pozniak, Curtis; Scholz, Uwe; Mayer, Klaus F X; Spannagl, Manuel; Stein, Nils; Mascher, Martin (2019). TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools. Genome Biology, 20:284.
  • Bergelson, Joy; Mittelstrass, Jana; Horton, Matthew W (2019). Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome. Scientific Reports, 9:24.
  • Bourras, Salim; Kunz, Lukas; Xue, Minfeng; Praz, Coraline Rosalie; Müller, Marion Claudia; Kälin, Carol; Schläfli, Michael; Ackermann, Patrick; Flückiger, Simon; Parlange, Francis; Menardo, Fabrizio; Schaefer, Luisa Katharina; Ben-David, Roi; Roffler, Stefan; Oberhaensli, Simone; Widrig, Victoria; Lindner, Stefan; Isaksson, Jonatan; Wicker, Thomas; Yu, Dazhao; Keller, Beat (2019). The AvrPm3-Pm3 effector-NLR interactions control both race-specific resistance and host-specificity of cereal mildews on wheat. Nature Communications, 10(1):2292-2308.
  • Kavagutti, Vinicius S; Andrei, Adrian-Stefan; Mehrshad, Maliheh; Salcher, Michaela M; Ghai, Rohit (2019). Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics. Microbiome, 7:135.
  • Sendek, Agnieszka; Karakoç, Canan; Wagg, Cameron; Domínguez-Begines, Jara; do Couto, Gabriela Martucci; van der Heijden, Marcel G A; Naz, Ali Ahmad; Lochner, Alfred; Chatzinotas, Antonis; Klotz, Stefan; Gómez-Aparicio, Lorena; Eisenhauer, Nico (2019). Drought modulates interactions between arbuscular mycorrhizal fungal diversity and barley genotype diversity. Scientific Reports, 9(1):9650.
  • Skinner, Colin; Gattinger, Andreas; Krauss, Maike; Krause, Hans-Martin; Mayer, Jochen; van der Heijden, Marcel G A; Mäder, Paul (2019). The impact of long-term organic farming on soil-derived greenhouse gas emissions. Scientific Reports, 9:1702.
  • Wagg, Cameron; Schlaeppi, Klaus; Banerjee, Samiran; Kuramae, Eiko E; van der Heijden, Marcel G A (2019). Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning. Nature Communications, 10:4841.
  • Vogler, Hannes; Santos-Fernandez, Gorka; Mecchia, Martin A; Grossniklaus, Ueli (2019). To preserve or to destroy, that is the question: the role of the cell wall integrity pathway in pollen tube growth. Current Opinion in Plant Biology, 52:131-139.
  • Rutowicz, Kinga; Lirski, Maciej; Mermaz, Benoît; Teano, Gianluca; Schubert, Jasmin; Mestiri, Imen; Kroteń, Magdalena A; Fabrice, Tohnyui Ndinyanka; Fritz, Simon; Grob, Stefan; Ringli, Christoph; Cherkezyan, Lusik; Barneche, Fredy; Jerzmanowski, Andrzej; Baroux, Célia (2019). Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis. Genome Biology, 20:157.
  • Kuon, Joel-E; Qi, Weihong; Schläpfer, Pascal; Hirsch-Hoffmann, Matthias; von Bieberstein, Philipp Rogalla; Patrignani, Andrea; Poveda, Lucy; Grob, Stefan; Keller, Miyako; Shimizu-Inatsugi, Rie; Grossniklaus, Ueli; Vanderschuren, Hervé; Gruissem, Wilhelm (2019). Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars. BMC Biology, 17(1):75.
  • Grob, Stefan; Grossniklaus, Ueli (2019). Invasive DNA elements modify the nuclear architecture of their insertion site by KNOT-linked silencing in Arabidopsis thaliana. Genome Biology, 20(1):120.
  • Wyder, Stefan; Raissig, Michael T; Grossniklaus, Ueli (2019). Consistent Reanalysis of Genome-wide Imprinting Studies in Plants Using Generalized Linear Models Increases Concordance across Datasets. Scientific Reports, 9(1):1320-..
  • Sathe, Santosh; Mathew, Anugraha; Agnoli, Kirsty; Eberl, Leo; Kümmerli, Rolf (2019). Genetic architecture constrains exploitation of siderophore cooperation in the bacterium Burkholderia cenocepacia. Evolution Letters, 3(6):610-622.
  • Luther, Anatol; Urfer, Matthias; Zahn, Michael; Müller, Maik; Wang, Shuang-Yan; Mondal, Milon; Vitale, Alessandra; Hartmann, Jean-Baptiste; Sharpe, Timothy; Monte, Fabio Lo; Kocherla, Harsha; Cline, Elizabeth; Pessi, Gabriella; Rath, Parthasarathi; Modaresi, Seyed Majed; Chiquet, Petra; Stiegeler, Sarah; Verbree, Carolin; Remus, Tobias; Schmitt, Michel; Kolopp, Caroline; Westwood, Marie-Anne; Desjonquères, Nicolas; Brabet, Emile; Hell, Sophie; LePoupon, Karen; Vermeulen, Annie; Jaisson, Régis; Rithié, Virginie; Upert, Grégory; Lederer, A; Zbinden, P; Wach, A; Moehle, Kerstin; Zerbe, Katja; Locher, H H; Bernardini, Federico; Dale, G E; Eberl, Leo; Wollscheid, Bernd; Hiller, Sebastian; Robinson, J A; Obrecht, D (2019). Chimeric peptidomimetic antibiotics against Gram-negative bacteria. Nature, 576(7787):452-458.
  • Silva, Marisa O D; Pernthaler, Jakob (2019). Priming of microcystin degradation in carbon-amended membrane biofilm communities is promoted by oxygen-limited conditions. FEMS Microbiology Ecology, 95(11):157.
  • Salcher, Michaela M; Schaefle, Daniel; Kaspar, Melissa; Neuenschwander, Stefan M; Ghai, Rohit (2019). Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae. The ISME journal, 13(11):2764-2777.
  • Loaiza Puerta, Viviana; Six, Johan; Wittwer, Raphael; van der Heijden, Marcel; Pujol Pereira, Engil Isadora (2019). Comparable bacterial-mediated nitrogen supply and losses under organic reduced tillage and conventional intensive tillage. Soil Biology and Biochemistry, 95:103121.
  • Herzog, Chantal; Honegger, Adrian; Hegglin, Django; Wittwer, Raphaël; de Ferron, Anne; Verbruggen, Erik; Jeanneret, Philippe; Schloter, Michael; Banerjee, Samiran; van der Heijden, Marcel G A (2019). Crop yield, weed cover and ecosystem multifunctionality are not affected by the duration of organic management. Agriculture, Ecosystems & Environment, 284:106596.
  • Sailer, Christian; Stöcklin, Jürg; Grossniklaus, Ueli (2019). Dynamics of apomictic and sexual reproduction during primary succession on a glacier forefield in the Swiss Alps. bioRxiv 807651, Cold Spring Harbor Laboratory.
  • Kartal, Önder; Schmid, Marc W; Grossniklaus, Ueli (2019). Cell Type-specific Genome Scans of DNA Methylation Diversity Indicate an Important Role for Transposable Elements. bioRxiv 801233, Cold Spring Harbor Laboratory.
  • O'Brien, Siobhán; Kümmerli, Rolf; Paterson, Steve; Winstanley, Craig; Brockhurst, Michael A (2019). Transposable temperate phages promote the evolution of divergent social strategies in Pseudomonas aeruginosa populations. Proceedings of the Royal Society of London, Series B: Biological Sciences, 286(1912):20191794.
  • Eckert, Ester M; Di Cesare, Andrea; Malki, Lala-Sakina; Villiger, Jörg; Pernthaler, Jakob; Callieri, Cristiana; Bertoni, Roberto; Corno, Gianluca (2019). Seasonality of the antibiotic resistance gene blaCTX-M in temperate Lake Maggiore. Hydrobiologia, 843(1):143-153.
  • Drinnenberg, Ines A; Berger, Frédéric; Elsässer, Simon J; Andersen, Peter R; Ausió, Juan; Bickmore, Wendy A; Blackwell, Alexander R; Erwin, Douglas H; Gahan, James M; Gaut, Brandon S; Harvey, Zachary H; Henikoff, Steven; Kao, Joyce Y; Kurdistani, Siavash K; Lemos, Bernardo; Levine, Mia T; Luger, Karolin; Malik, Harmit S; Martín-Durán, José M; Peichel, Catherine L; Renfree, Marilyn B; Rutowicz, Kinga; Sarkies, Peter; Schmitz, Robert J; Technau, Ulrich; Thornton, Joseph W; Warnecke, Tobias; Wolfe, Kenneth H (2019). EvoChromo: towards a synthesis of chromatin biology and evolution. Development, 146(19):dev178962.
  • Rezzoagli, Chiara; Granato, Elisa T; Kümmerli, Rolf (2019). In-vivo microscopy reveals the impact of Pseudomonas aeruginosa social interactions on host colonization. The ISME journal, 13(10):2403-2414.
  • Süssenbacher, Iris; Menghini, Damian; Scherzer, Gerhard; Salinger, Kathrin; Erhart, Theresia; Moser, Simone; Vergeiner, Clemens; Hörtensteiner, Stefan; Kräutler, Bernhard (2019). Cryptic chlorophyll breakdown in non-senescent green Arabidopsis thaliana leaves. Photosynthesis Research, 142(1):69-85.
  • Xie, Zuokun; Wu, Shengdong; Chen, Junyi; Zhu, Xiaoyu; Zhou, Xin; Hörtensteiner, Stefan; Ren, Guodong; Kuai, Benke (2019). The C-terminal cysteine-rich motif of NYE1/SGR1 is indispensable for its function in chlorophyll degradation in Arabidopsis. Plant molecular biology, 101(3):257-268.
  • Schreier, Tina B; Umhang, Martin; Lee, Sang-Kyu; Lue, Wei-Ling; Shen, Zhouxin; Silver, Dylan; Graf, Alexander; Müller, Antonia; Eicke, Simona; Stadler-Waibel, Martha; Seung, David; Bischof, Sylvain; Briggs, Steven P; Kötting, Oliver; Moorhead, Greg B G; Chen, Jychian; Zeeman, Samuel C (2019). LIKE SEX4 1 Acts as a β-Amylase-Binding Scaffold on Starch Granules during Starch Degradation. Plant Cell, 31(9):2169-2186.
  • Herger, Aline; Dünser, Kai; Kleine-Vehn, Jürgen; Ringli, Christoph (2019). Leucine-Rich Repeat Extensin Proteins and Their Role in Cell Wall Sensing. Current Biology, 29(17):R851-R858.
  • Šimek, Karel; Grujčić, Vesna; Nedoma, Jiří; Jezberová, Jitka; Šorf, Michal; Matoušů, Anna; Pechar, Libor; Posch, Thomas; Bruni, Estelle P; Vrba, Jaroslav (2019). Microbial food webs in hypertrophic fishponds: Omnivorous ciliate taxa are major protistan bacterivores. Limnology and Oceanography, 64(5):2295-2309.
  • De Vrieze, Mout; Gloor, Ramona; Massana Codina, Josep; Torriani, Stefano; Gindro, Katia; L'Haridon, Floriane; Bailly, Aurélien; Weisskopf, Laure (2019). Biocontrol Activity of Three Pseudomonas in a Newly Assembled Collection of Phytophthora infestans Isolates. Phytopathology, 109(9):1555-1565.
  • Reimer, Marie; Ringselle, Björn; Bergkvist, Göran; Westaway, Sally; Wittwer, Raphaël; Baresel, Jörg Peter; van der Heijden, Marcel G A; Mangerud, Kjell; Finckh, Maria R; Brandsæter, Lars Olav (2019). Interactive Effects of Subsidiary Crops and Weed Pressure in the Transition Period to Non-Inversion Tillage, A Case Study of Six Sites Across Northern and Central Europe. Agronomy, 9(9):495.
  • Yu, Dade; Wildhagen, Henning; Tylewicz, Szymon; Miskolczi, Pal C; Bhalerao, Rishikesh P; Polle, Andrea (2019). Abscisic acid signalling mediates biomass trade‐off and allocation in poplar. New Phytologist, 223(3):1192-1203.
  • Tsutsui, Hiroki; Sato, Yoshikatsu; Susaki, Daichi; Higashiyama, Tetsuya (2019). Microtubule depletion domain 1 localizes at the boundary between female gametes in Arabidopsis thaliana. Molecular Reproduction and Development, 86(8):925.
  • Xiao, Yu; Stegmann, Martin; Han, Zhifu; DeFalco, Thomas A; Parys, Katarzyna; Xu, Li; Belkhadir, Youssef; Zipfel, Cyril; Chai, Jijie (2019). Mechanisms of RALF peptide perception by a heterotypic receptor complex. Nature, 572(7768):270-274.
  • Amorim-Silva, Vitor; Garcia-Moreno, Alvaro; Castillo, Araceli G; Lakhssassi, Naoufal; Del Valle, Alicia Esteban; Perez-Sancho, Jessica; Li, Yansha; Pose, David; Perez-Rodriguez, Josefa; Lin, Jinxing; Valpuesta, Victoriano; Borsani, Omar; Zipfel, Cyril; Macho, Alberto P; Botella, Miguel A (2019). TTL proteins scaffold brassinosteroid signaling components at the plasma membrane to optimize signal transduction in Arabidopsis. Plant Cell, 31(8):1807-1828.
  • Gimeno, Alejandro; Sohlberg, Elina; Pakula, Tiina; Limnell, Jenni; Keller, Beat; Laitila, Arja; Vogelgsang, Susanne (2019). TaqMan qPCR for Quantification of Clonostachys rosea Used as a Biological Control Agent Against Fusarium graminearum. Frontiers in Microbiology, 10:1627.
  • Burri, Jan T; Saikia, Eashan; Läubli, Nino F; Vogler, Hannes; Wittel, Falk K; Rüggeberg, Markus; Herrmann, Hans J; Burgert, Ingo; Nelson, Bradley J; Grossniklaus, Ueli (2019). The mechanical basis for snapping of the Venus flytrap, Darwin’s ‘most wonderful plant in the world’. bioRxiv 697797, Cold Spring Harbor Laboratory.
  • Wong, Jaslyn E M M; Nadzieja, Marcin; Madsen, Lene H; Bücherl, Christoph A; Dam, Svend; Sandal, Niels N; Couto, Daniel; Derbyshire, Paul; Uldum-Berentsen, Mette; Schroeder, Sina; Schwämmle, Veit; Nogueira, Fábio C S; Asmussen, Mette H; Thirup, Søren; Radutoiu, Simona; Blaise, Mickaël; Andersen, Kasper R; Menke, Frank L H; Zipfel, Cyril; Stougaard, Jens (2019). A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation. Proceedings of the National Academy of Sciences of the United States of America, 116(28):14339-14348.
  • Moussu, Steven; Broyart, Caroline; Santos-Fernandez, Gorka; Augustin, Sebastian; Wehrle, Sarah; Grossniklaus, Ueli; Santiago, Julia (2019). Structural basis for recognition of RALF peptides by LRX proteins during pollen tube growth. bioRxiv 695874, Cold Spring Harbor Laboratory.
  • Bulzu, Paul-Adrian; Andrei, Adrian-Stefan; Salcher, Michaela M; Mehrshad, Maliheh; Inoue, Keiichi; Kandori, Hideki; Beja, Oded; Ghai, Rohit; Banciu, Horia L (2019). Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche. Nature Microbiology, 4(7):1129-1137.
  • Callieri, Cristiana; Slabakova, Violeta; Dzhembekova, Nina; Slabakova, Nataliya; Peneva, Elisaveta; Cabello-Yeves, Pedro J; Di Cesare, Andrea; Eckert, Ester M; Bertoni, Roberto; Corno, Gianluca; Salcher, Michaela M; Kamburska, Lyudmila; Bertoni, Filippo; Moncheva, Snejana (2019). The mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcus challenges our understanding of global “deep red fluorescence”. The ISME journal, 13(7):1676-1687.
  • Fernández, Iván; Cosme, Marco; Stringlis, Ioannis A; Yu, Ke; de Jonge, Ronnie; van Wees, Saskia C M; Pozo, Maria J; Pieterse, Corné M J; van der Heijden, Marcel G A (2019). Molecular dialogue between arbuscular mycorrhizal fungi and the nonhost plant Arabidopsis thaliana switches from initial detection to antagonism. New Phytologist, 223(2):867-881.
  • Banerjee, Samiran; Walder, Florian; Büchi, Lucie; Meyer, Marcel; Held, Alain Y; Gattinger, Andreas; Keller, Thomas; Charles, Raphael; van der Heijden, Marcel G A (2019). Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots. The ISME journal, 13(7):1722-1736.
  • Díaz, Mariana; Pečinková, Petra; Nowicka, Anna; Baroux, Célia; Sakamoto, Takuya; Gandha, Priscilla Yuliani; Jeřábková, Hana; Matsunaga, Sachihiro; Grossniklaus, Ueli; Pecinka, Ales (2019). The SMC5/6 Complex Subunit NSE4A Is Involved in DNA Damage Repair and Seed Development. Plant Cell, 31(7):1579-1597.
  • Steinbach, Yvonne (2019). The Arabidopsis thaliana CONSTANS-LIKE 4 (COL4) – A Modulator of Flowering Time. Frontiers in Plant Science, 10:651.
  • Miskolczi, Pál; Singh, Rajesh Kumar; Tylewicz, Szymon; Azeez, Abdul; Maurya, Jay P; Tarkowská, Danuše; Novák, Ondřej; Jonsson, Kristoffer; Bhalerao, Rishikesh P (2019). Long-range mobile signals mediate seasonal control of shoot growth. Proceedings of the National Academy of Sciences of the United States of America, 116(22):10852-10857.
  • Wuest, Samuel E; Pires, Nuno D; Luo, Shan; Vasseur, Francois; Messier, Julie; Grossniklaus, Ueli; Niklaus, Pascal A (2019). Increasing plant group productivity through latent genetic variation for cooperation. bioRxiv 641449, Cold Spring Harbor Laboratory.
  • Kierzkowski, Daniel; Runions, Adam; Vuolo, Francesco; Strauss, Sören; Lymbouridou, Rena; Routier-Kierzkowska, Anne-Lise; Wilson-Sánchez, David; Jenke, Hannah; Galinha, Carla; Mosca, Gabriella; Zhang, Zhongjuan; Canales, Claudia; Dello Ioio, Raffaele; Huijser, Peter; Smith, Richard S; Tsiantis, Miltos (2019). A Growth-Based Framework for Leaf Shape Development and Diversity. Cell, 177(6):1405-1418.e17.
  • Wechsler, Tobias; Kümmerli, Rolf; Dobay, Akos (2019). Understanding policing as a mechanism of cheater control in cooperating bacteria. Journal of Evolutionary Biology, 32(5):412-424.
  • Lammertz, Meltem; Kuhn, Hannah; Pfeilmeier, Sebastian; Malone, Jacob; Zipfel, Cyril; Kwaaitaal, Mark; Lin, Nai-Chun; Kvitko, Brian H; Panstruga, Ralph (2019). Widely Conserved Attenuation of Plant MAMP-Induced Calcium Influx by Bacteria Depends on Multiple Virulence Factors and May Involve Desensitization of Host Pattern Recognition Receptors. Molecular Plant-Microbe Interactions, 32(5):608-621.
  • Silva, Marisa O D; Desmond, Peter; Derlon, Nicolas; Morgenroth, Eberhard; Pernthaler, Jakob (2019). Source Community and Assembly Processes Affect the Efficiency of Microbial Microcystin Degradation on Drinking Water Filtration Membranes. Frontiers in Microbiology, 10:843.
  • Schaufelberger, Myriam; Galbier, Florian; Herger, Aline; de Brito Francisco, Rita; Roffler, Stefan; Clement, Gilles; Diet, Anouck; Hörtensteiner, Stefan; Wicker, Thomas; Ringli, Christoph (2019). Mutations in the Arabidopsis ROL17/isopropylmalate synthase 1 locus alter amino acid content, modify the TOR network, and suppress the root hair cell development mutant lrx1. Journal of Experimental Botany, 70(8):2313-2323.
  • Brukhin, Vladimir; Osadtchiy, Jaroslaw V; Florez-Rueda, Ana Marcela; Smetanin, Dmitry; Bakin, Evgeny; Nobre, Margarida Sofia; Grossniklaus, Ueli (2019). The Boechera Genus as a Resource for Apomixis Research. Frontiers in Plant Science:10:392.
  • Dünser, Kai; Gupta, Shibu; Herger, Aline; Feraru, Mugurel I; Ringli, Christoph; Kleine‐Vehn, Jürgen (2019). Extracellular matrix sensing by FERONIA and Leucine‐Rich Repeat Extensins controls vacuolar expansion during cellular elongation in Arabidopsis thaliana. The EMBO Journal, 38(7):1-12.
  • Burri, Jan T; Vogler, Hannes; Munglani, Gautam; Laubli, Nino F; Grossniklaus, Ueli; Nelson, Bradley J (2019). A Microrobotic System for Simultaneous Measurement of Turgor Pressure and Cell-Wall Elasticity of Individual Growing Plant Cells. IEEE Robotics and Automation Letters, 4(2):641-646.
  • Schiessl, Konstanze T; Ross‐Gillespie, Adin; Cornforth, Daniel M; Weigert, Michael; Bigosch, Colette; Brown, Sam P; Ackermann, Martin; Kümmerli, Rolf (2019). Individual‐ versus group‐optimality in the production of secreted bacterial compounds. Evolution, 73(4):675-688.
  • Brulé, Daphnée; Villano, Clizia; Davies, Laura J; Trdá, Lucie; Claverie, Justine; Héloir, Marie-Claire; Chiltz, Annick; Adrian, Marielle; Darblade, Benoît; Tornero, Pablo; Stransfeld, Lena; Boutrot, Freddy; Zipfel, Cyril; Dry, Ian B; Poinssot, Benoit (2019). The grapevine (Vitis vinifera) LysM receptor kinases VvLYK1-1 and VvLYK1-2 mediate chitooligosaccharide-triggered immunity. Plant Biotechnology Journal, 17(4):812-825.
  • Andrei, Adrian-Stefan; Salcher, Michaela M; Mehrshad, Maliheh; Rychtecký, Pavel; Znachor, Petr; Ghai, Rohit (2019). Niche-directed evolution modulates genome architecture in freshwater Planctomycetes. The ISME journal, 13(4):1056-1071.
  • Straub, Hervé; Bigger, Claudio M; Valentin, Jules; Abt, Dominik; Qin, Xiao-Hua; Eberl, Leo; Maniura-Weber, Katharina; Ren, Qun (2019). Bacterial Adhesion on Soft Materials: Passive Physicochemical Interactions or Active Bacterial Mechanosensing?. Advanced Healthcare Materials, 8(8):e1801323.
  • Colombi, Tino; Walder, Florian; Büchi, Lucie; Sommer, Marlies; Liu, Kexing; Six, Johan; van der Heijden, Marcel G A; Charles, Raphaël; Keller, Thomas (2019). On-farm study reveals positive relationship between gas transport capacity and organic carbon content in arable soil. SOIL, 5(1):91-105.
  • Sánchez-Martín, Javier; Keller, Beat (2019). Contribution of recent technological advances to future resistance breeding. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 132(3):713-732.
  • Läubli, Nino F; Shamsudhin, Naveen; Vogler, Hannes; Munglani, Gautam; Grossniklaus, Ueli; Ahmed, Daniel; Nelson, Bradley J (2019). 3D Manipulation and Imaging of Plant Cells using Acoustically Activated Microbubbles. Small Methods, 3(3):1800527.
  • Bender, S Franz; Schlaeppi, Klaus; Held, Alain; Van der Heijden, Marcel G A (2019). Establishment success and crop growth effects of an arbuscular mycorrhizal fungus inoculated into Swiss corn fields. Agriculture, Ecosystems & Environment, 273:13-24.
  • Wan, Wei‐Lin; Zhang, Lisha; Pruitt, Rory; Zaidem, Maricris; Brugman, Rik; Ma, Xiyu; Krol, Elzbieta; Perraki, Artemis; Kilian, Joachim; Grossmann, Guido; Stahl, Mark; Shan, Libo; Zipfel, Cyril; van Kan, Jan A L; Hedrich, Rainer; Weigel, Detlef; Gust, Andrea A; Nürnberger, Thorsten (2019). Comparing Arabidopsis receptor kinase and receptor protein‐mediated immune signaling reveals BIK1‐dependent differences. New Phytologist, 221(4):2080-2095.
  • Pfeilmeier, Sebastian; George, Jeoffrey; Morel, Arry; Roy, Sonali; Smoker, Matthew; Stransfeld, Lena; Downie, J Allan; Peeters, Nemo; Malone, Jacob G; Zipfel, Cyril (2019). Expression of the Arabidopsis thaliana immune receptor EFR in Medicago truncatula reduces infection by a root pathogenic bacterium, but not nitrogen‐fixing rhizobial symbiosis. Plant Biotechnology Journal, 17(3):569-579.
  • Müller, Marion C; Praz, Coraline R; Sotiropoulos, Alexandros G; Menardo, Fabrizio; Kunz, Lukas; Schudel, Seraina; Oberhänsli, Simone; Poretti, Manuel; Wehrli, Andreas; Bourras, Salim; Keller, Beat; Wicker, Thomas (2019). A chromosome-scale genome assembly reveals a highly dynamic effector repertoire of wheat powdery mildew. New Phytologist, 221(4):2176-2189.
  • Chung, Yuhee; Zhu, Yang; Wu, Miin-Feng; Simonini, Sara; Kuhn, Andre; Armenta-Medina, Alma; Jin, Run; Østergaard, Lars; Gillmor, C Stewart; Wagner, Doris (2019). Auxin Response Factors promote organogenesis by chromatin-mediated repression of the pluripotency gene SHOOTMERISTEMLESS. Nature Communications, 10(1):886.
  • Saur, Isabel M L; Bauer, Saskia; Kracher, Barbara; Lu, Xunli; Franzeskakis, Lamprinos; Müller, Marion C; Sabelleck, Bjo ̈rn; Kümmel, Florian; Panstruga, Ralph; Maekawa, Takaki; Schulze-Lefert, Paul (2019). Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism. eLife, 8:e44471.
  • Pitsch, Gianna; Bruni, Estelle Patricia; Forster, Dominik; Qu, Zhishuai; Sonntag, Bettina; Stoeck, Thorsten; Posch, Thomas (2019). Seasonality of Planktonic Freshwater Ciliates: Are Analyses Based on V9 Regions of the 18S rRNA Gene Correlated With Morphospecies Counts?. Frontiers in Microbiology, 10:248.
  • Seitz, Steffen; Goebes, Philipp; Puerta, Viviana Loaiza; Pereira, Engil Isadora Pujol; Wittwer, Raphaël; Six, Johan; van der Heijden, Marcel G A; Scholten, Thomas (2019). Conservation tillage and organic farming reduce soil erosion. Agronomy for Sustainable Development, 39(1):4.
  • Kramer, Jos; Meunier, Joël (2019). The other facets of family life and their role in the evolution of animal sociality. Biological Reviews of the Cambridge Philosophical Society, 94(1):199-215.
  • Koller, Teresa; Brunner, Susanne; Herren, Gerhard; Sanchez-Martin, Javier; Hurni, Severine; Keller, Beat (2019). Field grown transgenic Pm3e wheat lines show powdery mildew resistance and no fitness costs associated with high transgene expression. Transgenic research, 28(1):9-20.
  • Milner, Sara G; Jost, Matthias; Taketa, Shin; et al; Herren, Gerhard; Müller, Thomas; Krattinger, Simon G; Keller, Beat (2019). Genebank genomics highlights the diversity of a global barley collection. Nature Genetics, 51(2):319-326.
  • Hsiao, Chien-Chi; Sieber, Simon; Georgiou, Antri; Bailly, Aurélien; Emmanouilidou, Despina; Carlier, Aurélien; Eberl, Leo; Gademann, Karl (2019). Synthesis and Biological Evaluation of the Novel Growth Inhibitor Streptol Glucoside, Isolated from an Obligate Plant Symbiont. Chemistry - A European Journal, 25(7):1722-1726.
  • Spiewak, Helena L; Shastri, Sravanthi; Zhang, Lili; Schwager, Stephan; Eberl, Leo; Vergunst, Annette C; Thomas, Mark S (2019). Burkholderia cenocepacia utilizes a type VI secretion system for bacterial competition. MicrobiologyOpen:e774.
  • Dumur, Tao; Duncan, Susan; Graumann, Katja; Desset, Sophie; Randall, Ricardo S; Scheid, Ortrun Mittelsten; Prodanov, Dimiter; Tatout, Christophe; Baroux, Célia (2019). Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions. Nucleus, 10(1):181-212.
  • Hörtensteiner, Stefan; Hauenstein, Mareike; Kräutler, Bernhard (2019). Chlorophyll breakdown—Regulation, biochemistry and phyllobilins as its products. In: Grimm, Bernhard. Metabolism, Structure and Function of Plant Tetrapyrroles: Introduction, Microbial and Eukaryotic Chlorophyll Synthesis and Catabolism. London: Elsevier, 213-271.
  • Bodenhausen, Natacha; Somerville, Vincent; Desirò, Alessandro; Walser, Jean-Claude; Borghi, Lorenzo; van der Heijden, Marcel G A; Schlaeppi, Klaus (2019). Petunia- and Arabidopsis-Specific Root Microbiota Responses to Phosphate Supplementation. Phytobiomes Journal, 3(2):112-124.
  • Baroux, Célia; Grossniklaus, Ueli (2019). Seeds—An evolutionary innovation underlying reproductive success in flowering plants. In: Grossniklaus, Ueli. Plant Development and Evolution. Amsterdam: Academic Press, 605-642.
  • Zélé, Flore; Santos-Matos, Gonçalo; Figueiredo, Alexandre R T; Eira, Cátia; Pinto, Catarina; Laurentino, Telma G; Sucena, Élio; Magalhães, Sara (2019). Spider mites escape bacterial infection by avoiding contaminated food. Oecologia, 189(1):111-122.
  • Schöneberg, T; Kibler, K; Wettstein, F E; Bucheli, T D; Forrer, H R; Musa, T; Mascher, F; Bertossa, M; Keller, B; Vogelgsang, S (2019). Influence of temperature, humidity duration and growth stage on the infection and mycotoxin production by Fusarium langsethiae and Fusarium poae in oats. Plant Pathology Journal, 68(1):173-184.
  • Archetti, Martina. Combining antibiotics and antivirulence compounds against Pseudomonas aeruginosa PAO1. 2019, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Toyofuku, Masanori; Nomura, Nobuhiko; Eberl, Leo (2019). Types and origins of bacterial membrane vesicles. Nature Reviews. Microbiology, 17(1):13-24.
  • Edited by: Grossniklaus, Ueli (2019). Amsterdam: Academic Press. Plant Development and Evolution.
  • Simonini, Sara; Østergaard, Lars (2019). Female reproductive organ formation: A multitasking endeavor. Current Topics in Developmental Biology, 131:337-371.
  • Florez-Rueda, Ana Marcela; Fiscalini, Flurin; Roth, Morgane; Grossniklaus, Ueli; Städler, Thomas (2019). Endosperm and seed transcriptomes reveal possible roles for small RNA pathways in wild tomato hybrid seed failure. bioRxiv 884387, Cold Spring Harbor Laboratory.
  • Pitsch, Gianna. Ciliates in freshwater ecosystems : insights from morphological and molecular approaches. 2019, University of Zurich, Faculty of Science.
  • Mannweiler, Olga. Mechanisms of competition and genome defense in Burkholderia cenocepacia H111. 2019, University of Zurich, Faculty of Science.
  • Bigger, Claudio Manuel. Bacterial Adhesion on Soft Materials: Passive Physicochemical Interactions or Active Bacterial Mechanosensing?. 2019, University of Zurich, Faculty of Medicine.
  • Calderón, Claudia E; Tienda, Sandra; Heredia-Ponce, Zaira; Arrebola, Eva; Cárcamo-Oyarce, Gerardo; Eberl, Leo; Cazorla, Francisco M (2019). The Compound 2-Hexyl, 5-Propyl Resorcinol Has a Key Role in Biofilm Formation by the Biocontrol Rhizobacterium Pseudomonas chlororaphis PCL1606. Frontiers in Microbiology, 10:396.
  • Fernández, Noemí; Cabrera, Juan J; Varadarajan, Adithi R; Lutz, Stefanie; Ledermann, Raphael; Roschitzki, Bernd; Eberl, Leo; Bedmar, Eulogio J; Fischer, Hans-Martin; Pessi, Gabriella; Ahrens, Christian H; Mesa, Socorro (2019). An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens. Frontiers in Microbiology, 10:924.
  • Moles, Tommaso Michele; de Brito Francisco, Rita; Mariotti, Lorenzo; Pompeiano, Antonio; Lupini, Antonio; Incrocci, Luca; Carmassi, Giulia; Scartazza, Andrea; Pistelli, Laura; Guglielminetti, Lorenzo; Pardossi, Alberto; Sunseri, Francesco; Hörtensteiner, Stefan; Santelia, Diana (2019). Salinity in Autumn-Winter Season and Fruit Quality of Tomato Landraces. Frontiers in Plant Science, 10:1078.
  • Sheng, Song. Chlorophyll breakdown : characterization of vacuolar chlorophyll catabolite transport. 2019, University of Zurich, Faculty of Science.
  • Praz, Coraline Rosalie. Genetic, genomic and transcriptomic analysis of the cereal - powdery mildew pathosystem. 2019, University of Zurich, Faculty of Science.
  • Hauenstein, Mareike Luca. Chlorophyll breakdown: side chain modifications of chlorophyll catabolites. 2019, University of Zurich, Faculty of Science.
  • Gupta, Shibu. Analysis of LRXs an their downstream components in cell growth regulation in Arabidopsis thaliana. 2019, University of Zurich, Faculty of Science.
  • Thalmann, Matthias; Coiro, Mario; Meier, Tiago; Wicker, Thomas; Zeeman, Samuel C; Santelia, Diana (2019). The evolution of functional complexity within the β-amylase gene family in land plants. BMC Evolutionary Biology:19:66.
  • Kadota, Yasuhiro; Liebrand, Thomas W H; Goto, Yukihisa; Sklenar, Jan; Derbyshire, Paul; Menke, Frank L H; Torres, Miguel-Angel; Molina, Antonio; Zipfel, Cyril; Coaker, Gitta; Shirasu, Ken (2019). Quantitative phosphoproteomic analysis reveals common regulatory mechanisms between effector- and PAMP-triggered immunity in plants. New Phytologist, 221:2160-2175.

• 2018

  • Kunwar, Sanju; Iriarte, Fanny; Fan, Qiurong; da Silva, Eduardo Evaristo; Ritchie, Laura; Nguyen, Nghi Song; Freeman, Joshua H; Stall, Robert E; Jones, Jeffrey B; Minsavage, Gerald V; Colee, James; Scott, Jay W; Vallad, Gary E; Zipfel, Cyril; Horvath, Diana; Westwood, Jack; Hutton, Samuel F; Paret, Mathews L (2018). Transgenic Expression of EFR and Bs2 Genes for Field Management of Bacterial Wilt and Bacterial Spot of Tomato. Phytopathology, 108(12):1402-1411.
  • Knapp, Samuel; van der Heijden, Marcel G A (2018). A global meta-analysis of yield stability in organic and conservation agriculture. Nature Communications, 9:3632.
  • Singh, Rajesh Kumar; Maurya, Jay P; Azeez, Abdul; Miskolczi, Pal; Tylewicz, Szymon; Stojkovič, Katja; Delhomme, Nicolas; Busov, Victor; Bhalerao, Rishikesh P (2018). A genetic network mediating the control of bud break in hybrid aspen. Nature Communications, 9:4173.
  • Wuest, Samuel E; Niklaus, Pascal A (2018). A plant biodiversity effect resolved to a single chromosomal region. Nature Ecology and Evolution, 2(12):1933-1939.
  • Kirioukhova, Olga; Shah, Jubin N; Larsen, Danaé S; Tayyab, Muhammad; Mueller, Nora E; Govind, Geetha; Baroux, Célia; Federer, Michael; Gheyselinck, Jacqueline; Barrell, Philippa J; Ma, Hong; Sprunck, Stefanie; Huettel, Bruno; Wallace, Helen; Grossniklaus, Ueli; Johnston, Amal J (2018). Aberrant imprinting may underlie evolution of parthenogenesis. Scientific Reports, 8:10626.
  • Schmid, Marc W; Giraldo-Fonseca, Alejandro; Rövekamp, Moritz; Smetanin, Dmitry; Bowman, John L; Grossniklaus, Ueli (2018). Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha. Genome Biology, 19(1):9-..
  • Sirová, Dagmara; Bárta, Jiří; Šimek, Karel; Posch, Thomas; Pech, Jiří; Stone, James; Borovec, Jakub; Adamec, Lubomír; Vrba, Jaroslav (2018). Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant. Microbiome, 6(1):225.
  • Mehrshad, Maliheh; Salcher, Michaela M; Okazaki, Yusuke; Nakano, Shin-ichi; Šimek, Karel; Andrei, Adrian-Stefan; Ghai, Rohit (2018). Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi. Microbiome, 6(1):176.
  • Di Cesare, Andrea; Cabello-Yeves, Pedro J; Chrismas, Nathan A M; Sánchez-Baracaldo, Patricia; Salcher, Michaela M; Callieri, Cristiana (2018). Genome analysis of the freshwater planktonic Vulcanococcus limneticus sp. nov. reveals horizontal transfer of nitrogenase operon and alternative pathways of nitrogen utilization. BMC Genomics, 19(1):259.
  • Granato, Elisa T; Ziegenhain, Christoph; Marvig, Rasmus L; Kümmerli, Rolf (2018). Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa. The ISME journal, 12(12):2907-2918.
  • Bourras, Salim; Praz, Coraline R; Spanu, Pietro D; Keller, Beat (2018). Cereal powdery mildew effectors: a complex toolbox for an obligate pathogen. Current Opinion in Microbiology, 46:26-33.
  • Li, B; Förster, C; Robert, C A M; Züst, T; Hu, L; Machado, R A R; Berset, J-D; Handrick, V; Knauer, T; Hensel, G; Chen, W; Kumlehn, J; Yang, P; Keller, B; Gershenzon, J; Jander, G; Köllner, T G; Erb, M (2018). Convergent evolution of a metabolic switch between aphid and caterpillar resistance in cereals. Science Advances, 4(12):eaat6797.
  • Thind, Anupriya Kaur; Wicker, Thomas; Müller, Thomas; Ackermann, Patrick M; Steuernagel, Burkhard; Wulff, Brande B H; Spannagl, Manuel; Twardziok, Sven O; Felder, Marius; Lux, Thomas; Mayer, Klaus F X; Keller, Beat; Krattinger, Simon G (2018). Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome dynamics between two wheat cultivars. Genome Biology, 19:104.
  • Paape, Timothy; Briskine, Roman V; Halstead-Nussloch, Gwyneth; Lischer, Heidi E L; Shimizu-Inatsugi, Rie; Hatakeyama, Masaomi; Tanaka, Kenta; Nishiyama, Tomoaki; Sabirov, Renat; Sese, Jun; Shimizu, Kentaro K (2018). Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica. Nature Communications, 9:3909.
  • Gomes, Margarida C; Tasrini, Yara; Subramoni, Sujatha; Agnoli, Kirsty; Feliciano, Joana R; Eberl, Leo; Sokol, Pamela; O'Callaghan, David; Vergunst, Annette C (2018). The afc antifungal activity cluster, which is under tight regulatory control of ShvR, is essential for transition from intracellular persistence of Burkholderia cenocepacia to acute pro-inflammatory infection. PLoS Pathogens, 14(12):e1007473.
  • Deppe, Johannes P; Rabbat, Ritta; Hörtensteiner, Stefan; Keller, Beat; Martinoia, Enrico; Lopéz-Marqués, Rosa L (2018). The wheat ABC transporter Lr34 modifies the lipid environment at the plasma membrane. Journal of Biological Chemistry, 293(48):18667-18679.
  • Okazaki, Yusuke; Salcher, Michaela M; Callieri, Cristiana; Nakano, Shin-ichi (2018). The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes. Frontiers in Microbiology, 9:2891.
  • Hörtensteiner, Stefan (2018). Intraorganellar Enzyme Partitioning: A Novel Layer of Chlorophyll Biosynthesis Regulation. Plant & Cell Physiology, 59(11):2167-2168.
  • Neuenschwander, Stefan M; Ghai, Rohit; Pernthaler, Jakob; Salcher, Michaela M (2018). Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria. The ISME journal, 12:185-198.
  • Mozgova, Iva; Alexandre, Cristina; Steinbach, Yvonne; Derkacheva, Maria; Schäfer, Eberhard; Gruissem, Wilhelm (2018). A tribute to Lars Hennig (1970–2018). Journal of Experimental Botany, 69(21):4989-4990.
  • Burri, Jan T; Vogler, Hannes; Läubli, Nino F; Hu, Chengzhi; Grossniklaus, Ueli; Nelson, Bradley J (2018). Feeling the force: how pollen tubes deal with obstacles. New Phytologist, 220(1):187-195.
  • Alfreider, Albin; Grimus, Victoria; Luger, Martin; Ekblad, Anja; Salcher, Michaela M; Summerer, Monika (2018). Autotrophic carbon fixation strategies used by nitrifying prokaryotes in freshwater lakes. FEMS Microbiology Ecology, 94(10):fiy163.
  • Sathe, Santosh; Nanjundiah, Vidyanand (2018). Complex interactions underpin social behaviour in Dictyostelium giganteum. Behavioral Ecology and Sociobiology:72:167.
  • Butaitė, Elena; Kramer, Jos; Wyder, Stefan; Kümmerli, Rolf (2018). Environmental determinants of pyoverdine production, exploitation and competition in natural Pseudomonas communities. Environmental Microbiology, 20(10):3629-3642.
  • Bourgeois, Yann; Stritt, Christoph; Walser, Jean-Claude; Gordon, Sean P; Vogel, John P; Roulin, Anne C (2018). Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon. The Plant Journal, 96(2):438-451.
  • Singh, Simrat Pal; Hurni, Severine; Ruinelli, Michela; Brunner, Susanne; Sanchez-Martin, Javier; Krukowski, Patricia; Peditto, David; Buchmann, Gabriele; Zbinden, Helen; Keller, Beat (2018). Evolutionary divergence of the rye Pm17 and Pm8 resistance genes reveals ancient diversity. Plant molecular biology, 98(3):249-260.
  • Das, Aditi; Christ, Bastien; Hörtensteiner, Stefan (2018). Characterization of the pheophorbide a oxygenase/phyllobilin pathway of chlorophyll breakdown in grasses. Planta, 248(4):875-892.
  • Simonini, Sara; Mas, Philippe J; Mas, Caroline M V S; Østergaard, Lars; Hart, Darren J (2018). Auxin sensing is a property of an unstructured domain in the Auxin Response Factor ETTIN of Arabidopsis thaliana. Scientific Reports, 8(1):13563.
  • Rezzoagli, Chiara; Wilson, David; Weigert, Michael; Wyder, Stefan; Kümmerli, Rolf (2018). Probing the evolutionary robustness of two repurposed drugs targeting iron uptake in Pseudomonas aeruginosa. Evolution, Medicine, and Public Health, 6:246-259.
  • Gruissem, Wilhelm; Keller, Beat. Auch die Schweizer Bauern sind auf Fortschritt angewiesen. In: Neue Zürcher Zeitung am Sonntag, 8 September 2018, p.1.
  • Yang, Ping; Praz, Coraline; Li, Beibei; Singla, Jyoti; Robert, Christelle A M; Kessel, Bettina; Scheuermann, Daniela; Lüthi, Linda; Ouzunova, Milena; Erb, Matthias; Krattinger, Simon G; Keller, Beat (2018). Fungal resistance mediated by maize wall‐associated kinase Zm WAK‐RLK1 correlates with reduced benzoxazinoid content. New Phytologist, 221(2):976-987.
  • Perraki, Artemis; DeFalco, Thomas A; Derbyshire, Paul; Avila, Julian; Séré, David; Sklenar, Jan; Qi, Xingyun; Stransfeld, Lena; Schwessinger, Benjamin; Kadota, Yasuhiro; Macho, Alberto P; Jiang, Shushu; Couto, Daniel; Torii, Keiko U; Menke, Frank L H; Zipfel, Cyril (2018). Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling. Nature, 561:248-252.
  • Roth, Morgane; Florez-Rueda, Ana M; Paris, Margot; Städler, Thomas (2018). Wild tomato endosperm transcriptomes reveal common roles of genomic imprinting in both nuclear and cellular endosperm. The Plant Journal, 95(6):1084-1101.
  • Carrión, Víctor J; Cordovez, Viviane; Tyc, Olaf; Etalo, Desalegn W; de Bruijn, Irene; de Jager, Victor C L; Medema, Marnix H; Eberl, Leo; Raaijmakers, Jos M (2018). Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils. The ISME journal, 12(9):2307-2321.
  • Keller, Beat; Wicker, Thomas; Krattinger, Simon G (2018). Advances in Wheat and Pathogen Genomics: Implications for Disease Control. Annual Review of Phytopathology, 56(1):67-87.
  • Appels, Rudi; Eversole, Kellye; Feuillet, Catherine; et al; Keller, Beat; Singh, K; Chhuneja, P; Gupta, O P; Jindal, S; Kaur, P; Malik, P; Sharma, P; Yadav, Bharat (2018). Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361(6403):eaar7191.
  • Franck, Christina Maria; Westermann, Jens; Bürssner, Simon; Lentz, Roswitha; Lituiev, Dmytro Sergiiovych; Boisson-Dernier, Aurélien (2018). The Protein Phosphatases ATUNIS1 and ATUNIS2 Regulate Cell Wall Integrity in Tip-Growing Cells. Plant Cell, 30(8):1906-1923.
  • Schöneberg, Torsten; Musa, Tomke; Forrer, Hans-Rudolf; Mascher, Fabio; Bucheli, Thomas D; Bertossa, Mario; Keller, Beat; Vogelgsang, Susanne (2018). Infection conditions of Fusarium graminearum in barley are variety specific and different from those in wheat. European Journal of Plant Pathology, 151(4):975-989.
  • Schreier, Tina B; Cléry, Antoine; Schläfli, Michael; Galbier, Florian; Stadler, Martha; Demarsy, Emilie; Albertini, Daniele; Maier, Benjamin A; Kessler, Felix; Hörtensteiner, Stefan; Zeeman, Samuel C; Kötting, Oliver (2018). Plastidial NAD-Dependent Malate Dehydrogenase: A Moonlighting Protein Involved in Early Chloroplast Development through Its Interaction with an FtsH12-FtsHi Protease Complex. Plant Cell, 30(8):1745-1769.
  • Kessi, Janine; Hörtensteiner, Stefan (2018). Inhibition of bacteriochlorophyll biosynthesis in the purple phototrophic bacteria Rhodospirillumrubrum and Rhodobacter capsulatus grown in the presence of a toxic concentration of selenite. BMC Microbiology, 18(1):81.
  • Grujcic, Vesna; Nuy, Julia K; Salcher, Michaela M; Shabarova, Tanja; Kasalicky, Vojtech; Boenigk, Jens; Jensen, Manfred; Simek, Karel (2018). Cryptophyta as major bacterivores in freshwater summer plankton. The ISME journal, 12(7):1668-1681.
  • Leinweber, Anne; Weigert, Michael; Kümmerli, Rolf (2018). The bacterium Pseudomonas aeruginosa senses and gradually responds to interspecific competition for iron. Evolution, 72(7):1515-1528.
  • Durgud, Meriem; Gupta, Saurabh; Ivanov, Ivan; Omidbakhshfard, M Amin; Benina, Maria; Alseekh, Saleh; Staykov, Nikola; Hauenstein, Mareike; Dijkwel, Paul P; Hörtensteiner, Stefan; Toneva, Valentina; Brotman, Yariv; Fernie, Alisdair R; Mueller-Roeber, Bernd; Gechev, Tsanko S (2018). Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant. Plant Physiology, 177(3):1319-1338.
  • Bock, Christina; Salcher, Michaela; Jensen, Manfred; Pandey, Ram Vinay; Boenigk, Jens (2018). Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes. Frontiers in Microbiology, 9:1290.
  • Dragoš, Anna; Kiesewalter, Heiko; Martin, Marivic; Hsu, Chih-Yu; Hartmann, Raimo; Wechsler, Tobias; Eriksen, Carsten; Brix, Susanne; Drescher, Knut; Stanley-Wall, Nicola; Kümmerli, Rolf; Kovács, Ákos T (2018). Division of Labor during Biofilm Matrix Production. Current Biology, 28(12):1903-1913.e5.
  • Lardi, Martina; Pessi, Gabriella (2018). Functional Genomics Approaches to Studying Symbioses between Legumes and Nitrogen-Fixing Rhizobia. High-Throughput, 7(2):15.
  • Silva, Marisa O D; Blom, Judith F; Yankova, Yana; Villiger, Jörg; Pernthaler, Jakob (2018). Priming of microbial microcystin degradation in biomass-fed gravity driven membrane filtration biofilms. Systematic and Applied Microbiology, 41(3):221-231.
  • Weidmann, Lukas; Jacquat, Christiane; Oertle, Daniel (2018). Quinoa oder die Gefahren des gesunden Essens. Swiss Medical Forum, 18(18):407-408.
  • Tylewicz, S; Petterle, A; Marttila, S; Miskolczi, P; Azeez, A; Singh, R K; Immanen, J; Mähler, N; Hvidsten, T R; Eklund, D M; Bowman, J L; Helariutta, Y; Bhalerao, R P (2018). Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication. Science, 360(6385):212-215.
  • Hedhly, Afif; Vogler, Hannes; Eichenberger, Christof; Grossniklaus, Ueli (2018). Whole-mount Clearing and Staining of Arabidopsis Flower Organs and Siliques. Journal of Visualized Experiments, (134):online.
  • Lardi, Martina; Liu, Yilei; Giudice, Gaetano; Ahrens, Christian H; Zamboni, Nicola; Pessi, Gabriella (2018). Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris. International Journal of Molecular Sciences, 19(4):1049.
  • Keller, Beat; Krattinger, Simon G (2018). A new player in race-specific resistance. Nature Plants, 4(4):197-198.
  • McNally, Kaitlin Elyse; Menardo, Fabrizio; Lüthi, Linda; Praz, Coraline Rosalie; Müller, Marion Claudia; Kunz, Lukas; Ben-David, Roi; Chandrasekhar, Kottakota; Dinoor, Amos; Cowger, Christina; Meyers, Emily; Xue, Mingfeng; Zeng, Fangsong; Gong, Shuangjun; Yu, Dazhao; Bourras, Salim; Keller, Beat (2018). Distinct domains of the AVRPM3A2/F2 avirulence protein from wheat powdery mildew are involved in immune receptor recognition and putative effector function. New Phytologist, 218(2):681-695.
  • Koller, Teresa; Brunner, Susanne; Herren, Gerhard; Hurni, Severine; Keller, Beat (2018). Pyramiding of transgenic Pm3 alleles in wheat results in improved powdery mildew resistance in the field. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 131(4):861-871.
  • Kliver, Sergei; Rayko, Mike; Komissarov, Alexey; Bakin, Evgeny; Zhernakova, Daria; Prasad, Kasavajhala; Rushworth, Catherine; Baskar, R; Smetanin, Dmitry; Schmutz, Jeremy; Rokhsar, Daniel S; Mitchell-Olds, Thomas; Grossniklaus, Ueli; Brukhin, Vladimir (2018). Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes. Genes, 9(4):185.
  • Losasso, Carmen; Eckert, Ester M; Mastrorilli, Eleonora; Villiger, Jorg; Mancin, Marzia; Patuzzi, Ilaria; Di Cesare, Andrea; Cibin, Veronica; Barrucci, Federica; Pernthaler, Jakob; Corno, Gianluca; Ricci, Antonia (2018). Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study. Frontiers in Microbiology:9:317.
  • Simonini, Sara; Stephenson, Pauline; Østergaard, Lars (2018). A molecular framework controlling style morphology in Brassicaceae. Development, 145(5):dev158105.
  • Krempaska, Natalia; Horňák, Karel; Pernthaler, Jakob (2018). Spatiotemporal distribution and microbial assimilation of polyamines in a mesotrophic lake. Limnology and Oceanography, 63(2):816-832.
  • Zhang, Qianqian; van Wijk, Ringo; Shahbaz, Muhammad; Roels, Wendy; van Schooten, Bas; Vermeer, Joop E M; Zarza, Xavier; Guardia, Aisha; Scuffi, Denise; García-Mata, Carlos; Laha, Debabrata; Williams, Phoebe; Willems, Leo A J; Ligterink, Wilco; Hoffmann-Benning, Susanne; Gillaspy, Glenda; Schaaf, Gabriel; Haring, Michel A; Laxalt, Ana M; Munnik, Teun (2018). Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure. Plant & Cell Physiology, 59(3):469-486.
  • Sapala, Aleksandra; Runions, Adam; Routier-Kierzkowska, Anne-Lise; Das Gupta, Mainak; Hong, Lilan; Hofhuis, Hugo; Verger, Stéphane; Mosca, Gabriella; Li, Chun-Biu; Hay, Angela; Hamant, Olivier; Roeder, Adrienne H K; Tsiantis, Miltos; Prusinkiewicz, Przemyslaw; Smith, Richard S (2018). Why plants make puzzle cells, and how their shape emerges. eLife, 7:e32794.
  • de Brito Francisco, Rita; Martinoia, Enrico (2018). The Vacuolar Transportome of Plant Specialized Metabolites. Plant & Cell Physiology, 59(7):1326-1336.
  • Praz, Coraline R; Menardo, Fabrizio; Robinson, Mark D; Müller, Marion C; Wicker, Thomas; Bourras, Salim; Keller, Beat (2018). Non-parent of Origin Expression of Numerous Effector Genes Indicates a Role of Gene Regulation in Host Adaption of the Hybrid Triticale Powdery Mildew Pathogen. Frontiers in Plant Science, 9:49.
  • Roth, Morgane; Florez-Rueda, Ana M; Griesser, Stephan; Paris, Margot; Städler, Thomas (2018). Incidence and developmental timing of endosperm failure in post-zygotic isolation between wild tomato lineages. Annals of Botany, 121(1):107-118.
  • Crüsemann, Max; Reher, Raphael; Schamari, Isabella; Brachmann, Alexander O; Ohbayashi, Tsubasa; Kuschak, Markus; Malfacini, Davide; Seidinger, Alexander; Pinto-Carbó, Marta; Richarz, René; Reuter, Tatjana; Kehraus, Stefan; Hallab, Asis; Attwood, Misty; Schiöth, Helgi B; Mergaert, Peter; Kikuchi, Yoshitomo; Schäberle, Till F; Kostenis, Evi; Wenzel, Daniela; Müller, Christa E; Piel, Jörn; Carlier, Aurélien; Eberl, Leo; König, Gabriele M (2018). Heterologous Expression, Biosynthetic Studies, and Ecological Function of the Selective Gq-Signaling Inhibitor FR900359. Angewandte Chemie Internationale Edition, 57(3):836-840.
  • Mosca, Gabriella; Adibi, Milad; Strauss, Soeren; Runions, Adam; Sapala, Aleksandra; Smith, Richard S (2018). Modeling Plant Tissue Growth and Cell Division. In: Mosca, Gabriella. Mathematical Modelling in Plant Biology. Switzerland: Springer, 107-138.
  • Thieme, Michael; Bucher, Etienne (2018). Transposable Elements as Tool for Crop Improvement. In: Gallusci, Philippe; Bucher, Etienne; Mirouze, Marie. View on ScienceDirect Plant Epigenetics Coming of Age for Breeding Applications. Amsterdam: Elsevier, 165-202.
  • Keller, Beat; Sánchez-Martín, Javier; Bourras, Salim (2018). Diseases affecting wheat and barley: powdery mildew. In: Burleigh, Rob; Dodds, Francis. Integrated disease management of wheat and barley. Cambridge: Burleigh Dodds Science Publishing, 4.
  • Schöneberg, Torsten; Jenny, Eveline; Wettstein, Felix E; Bucheli, Thomas D; Mascher, Fabio; Bertossa, Mario; Musa, Tomke; Seifert, Keith; Gräfenhan, Tom; Keller, Beat; Vogelgsang, Susanne (2018). Occurrence of Fusarium species and mycotoxins in Swiss oats—Impact of cropping factors. European Journal of Agronomy, 92:123-132.
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