Publications IPMB

ZORA Publication List

Publications

• 2018

  • Kunwar, Sanju; Iriarte, Fanny; Fan, Qiurong; da Silva, Eduardo Evaristo; Ritchie, Laura; Nguyen, Nghi Song; Freeman, Joshua H; Stall, Robert E; Jones, Jeffrey B; Minsavage, Gerald V; Colee, James; Scott, Jay W; Vallad, Gary E; Zipfel, Cyril; Horvath, Diana; Westwood, Jack; Hutton, Samuel F; Paret, Mathews L (2018). Transgenic Expression of EFR and Bs2 Genes for Field Management of Bacterial Wilt and Bacterial Spot of Tomato. Phytopathology, 108(12):1402-1411.
  • Knapp, Samuel; van der Heijden, Marcel G A (2018). A global meta-analysis of yield stability in organic and conservation agriculture. Nature Communications, 9:3632.
  • Singh, Rajesh Kumar; Maurya, Jay P; Azeez, Abdul; Miskolczi, Pal; Tylewicz, Szymon; Stojkovič, Katja; Delhomme, Nicolas; Busov, Victor; Bhalerao, Rishikesh P (2018). A genetic network mediating the control of bud break in hybrid aspen. Nature Communications, 9:4173.
  • Wuest, Samuel E; Niklaus, Pascal A (2018). A plant biodiversity effect resolved to a single chromosomal region. Nature Ecology and Evolution, 2(12):1933-1939.
  • Kirioukhova, Olga; Shah, Jubin N; Larsen, Danaé S; Tayyab, Muhammad; Mueller, Nora E; Govind, Geetha; Baroux, Célia; Federer, Michael; Gheyselinck, Jacqueline; Barrell, Philippa J; Ma, Hong; Sprunck, Stefanie; Huettel, Bruno; Wallace, Helen; Grossniklaus, Ueli; Johnston, Amal J (2018). Aberrant imprinting may underlie evolution of parthenogenesis. Scientific Reports, 8:10626.
  • Schmid, Marc W; Giraldo-Fonseca, Alejandro; Rövekamp, Moritz; Smetanin, Dmitry; Bowman, John L; Grossniklaus, Ueli (2018). Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha. Genome Biology, 19(1):9-..
  • Sirová, Dagmara; Bárta, Jiří; Šimek, Karel; Posch, Thomas; Pech, Jiří; Stone, James; Borovec, Jakub; Adamec, Lubomír; Vrba, Jaroslav (2018). Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant. Microbiome, 6(1):225.
  • Mehrshad, Maliheh; Salcher, Michaela M; Okazaki, Yusuke; Nakano, Shin-ichi; Šimek, Karel; Andrei, Adrian-Stefan; Ghai, Rohit (2018). Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi. Microbiome, 6(1):176.
  • Di Cesare, Andrea; Cabello-Yeves, Pedro J; Chrismas, Nathan A M; Sánchez-Baracaldo, Patricia; Salcher, Michaela M; Callieri, Cristiana (2018). Genome analysis of the freshwater planktonic Vulcanococcus limneticus sp. nov. reveals horizontal transfer of nitrogenase operon and alternative pathways of nitrogen utilization. BMC Genomics, 19(1):259.
  • Granato, Elisa T; Ziegenhain, Christoph; Marvig, Rasmus L; Kümmerli, Rolf (2018). Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa. The ISME journal, 12(12):2907-2918.
  • Bourras, Salim; Praz, Coraline R; Spanu, Pietro D; Keller, Beat (2018). Cereal powdery mildew effectors: a complex toolbox for an obligate pathogen. Current Opinion in Microbiology, 46:26-33.
  • Li, B; Förster, C; Robert, C A M; Züst, T; Hu, L; Machado, R A R; Berset, J-D; Handrick, V; Knauer, T; Hensel, G; Chen, W; Kumlehn, J; Yang, P; Keller, B; Gershenzon, J; Jander, G; Köllner, T G; Erb, M (2018). Convergent evolution of a metabolic switch between aphid and caterpillar resistance in cereals. Science Advances, 4(12):eaat6797.
  • Thind, Anupriya Kaur; Wicker, Thomas; Müller, Thomas; Ackermann, Patrick M; Steuernagel, Burkhard; Wulff, Brande B H; Spannagl, Manuel; Twardziok, Sven O; Felder, Marius; Lux, Thomas; Mayer, Klaus F X; Keller, Beat; Krattinger, Simon G (2018). Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome dynamics between two wheat cultivars. Genome Biology, 19:104.
  • Paape, Timothy; Briskine, Roman V; Halstead-Nussloch, Gwyneth; Lischer, Heidi E L; Shimizu-Inatsugi, Rie; Hatakeyama, Masaomi; Tanaka, Kenta; Nishiyama, Tomoaki; Sabirov, Renat; Sese, Jun; Shimizu, Kentaro K (2018). Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica. Nature Communications, 9:3909.
  • Gomes, Margarida C; Tasrini, Yara; Subramoni, Sujatha; Agnoli, Kirsty; Feliciano, Joana R; Eberl, Leo; Sokol, Pamela; O'Callaghan, David; Vergunst, Annette C (2018). The afc antifungal activity cluster, which is under tight regulatory control of ShvR, is essential for transition from intracellular persistence of Burkholderia cenocepacia to acute pro-inflammatory infection. PLoS Pathogens, 14(12):e1007473.
  • Deppe, Johannes P; Rabbat, Ritta; Hörtensteiner, Stefan; Keller, Beat; Martinoia, Enrico; Lopéz-Marqués, Rosa L (2018). The wheat ABC transporter Lr34 modifies the lipid environment at the plasma membrane. Journal of Biological Chemistry, 293(48):18667-18679.
  • Okazaki, Yusuke; Salcher, Michaela M; Callieri, Cristiana; Nakano, Shin-ichi (2018). The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes. Frontiers in Microbiology, 9:2891.
  • Hörtensteiner, Stefan (2018). Intraorganellar Enzyme Partitioning: A Novel Layer of Chlorophyll Biosynthesis Regulation. Plant & Cell Physiology, 59(11):2167-2168.
  • Neuenschwander, Stefan M; Ghai, Rohit; Pernthaler, Jakob; Salcher, Michaela M (2018). Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria. The ISME journal, 12:185-198.
  • Mozgova, Iva; Alexandre, Cristina; Steinbach, Yvonne; Derkacheva, Maria; Schäfer, Eberhard; Gruissem, Wilhelm (2018). A tribute to Lars Hennig (1970–2018). Journal of Experimental Botany, 69(21):4989-4990.
  • Burri, Jan T; Vogler, Hannes; Läubli, Nino F; Hu, Chengzhi; Grossniklaus, Ueli; Nelson, Bradley J (2018). Feeling the force: how pollen tubes deal with obstacles. New Phytologist, 220(1):187-195.
  • Alfreider, Albin; Grimus, Victoria; Luger, Martin; Ekblad, Anja; Salcher, Michaela M; Summerer, Monika (2018). Autotrophic carbon fixation strategies used by nitrifying prokaryotes in freshwater lakes. FEMS Microbiology Ecology, 94(10):fiy163.
  • Sathe, Santosh; Nanjundiah, Vidyanand (2018). Complex interactions underpin social behaviour in Dictyostelium giganteum. Behavioral Ecology and Sociobiology:72:167.
  • Butaitė, Elena; Kramer, Jos; Wyder, Stefan; Kümmerli, Rolf (2018). Environmental determinants of pyoverdine production, exploitation and competition in natural Pseudomonas communities. Environmental Microbiology, 20(10):3629-3642.
  • Bourgeois, Yann; Stritt, Christoph; Walser, Jean-Claude; Gordon, Sean P; Vogel, John P; Roulin, Anne C (2018). Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon. The Plant Journal, 96(2):438-451.
  • Singh, Simrat Pal; Hurni, Severine; Ruinelli, Michela; Brunner, Susanne; Sanchez-Martin, Javier; Krukowski, Patricia; Peditto, David; Buchmann, Gabriele; Zbinden, Helen; Keller, Beat (2018). Evolutionary divergence of the rye Pm17 and Pm8 resistance genes reveals ancient diversity. Plant molecular biology, 98(3):249-260.
  • Das, Aditi; Christ, Bastien; Hörtensteiner, Stefan (2018). Characterization of the pheophorbide a oxygenase/phyllobilin pathway of chlorophyll breakdown in grasses. Planta, 248(4):875-892.
  • Simonini, Sara; Mas, Philippe J; Mas, Caroline M V S; Østergaard, Lars; Hart, Darren J (2018). Auxin sensing is a property of an unstructured domain in the Auxin Response Factor ETTIN of Arabidopsis thaliana. Scientific Reports, 8(1):13563.
  • Rezzoagli, Chiara; Wilson, David; Weigert, Michael; Wyder, Stefan; Kümmerli, Rolf (2018). Probing the evolutionary robustness of two repurposed drugs targeting iron uptake in Pseudomonas aeruginosa. Evolution, Medicine, and Public Health, 6:246-259.
  • Gruissem, Wilhelm; Keller, Beat. Auch die Schweizer Bauern sind auf Fortschritt angewiesen. In: Neue Zürcher Zeitung am Sonntag, 8 September 2018, p.1.
  • Yang, Ping; Praz, Coraline; Li, Beibei; Singla, Jyoti; Robert, Christelle A M; Kessel, Bettina; Scheuermann, Daniela; Lüthi, Linda; Ouzunova, Milena; Erb, Matthias; Krattinger, Simon G; Keller, Beat (2018). Fungal resistance mediated by maize wall‐associated kinase Zm WAK‐RLK1 correlates with reduced benzoxazinoid content. New Phytologist, 221(2):976-987.
  • Perraki, Artemis; DeFalco, Thomas A; Derbyshire, Paul; Avila, Julian; Séré, David; Sklenar, Jan; Qi, Xingyun; Stransfeld, Lena; Schwessinger, Benjamin; Kadota, Yasuhiro; Macho, Alberto P; Jiang, Shushu; Couto, Daniel; Torii, Keiko U; Menke, Frank L H; Zipfel, Cyril (2018). Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling. Nature, 561:248-252.
  • Roth, Morgane; Florez-Rueda, Ana M; Paris, Margot; Städler, Thomas (2018). Wild tomato endosperm transcriptomes reveal common roles of genomic imprinting in both nuclear and cellular endosperm. The Plant Journal, 95(6):1084-1101.
  • Carrión, Víctor J; Cordovez, Viviane; Tyc, Olaf; Etalo, Desalegn W; de Bruijn, Irene; de Jager, Victor C L; Medema, Marnix H; Eberl, Leo; Raaijmakers, Jos M (2018). Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils. The ISME journal, 12(9):2307-2321.
  • Keller, Beat; Wicker, Thomas; Krattinger, Simon G (2018). Advances in Wheat and Pathogen Genomics: Implications for Disease Control. Annual Review of Phytopathology, 56(1):67-87.
  • Appels, Rudi; Eversole, Kellye; Feuillet, Catherine; et al; Keller, Beat; Singh, K; Chhuneja, P; Gupta, O P; Jindal, S; Kaur, P; Malik, P; Sharma, P; Yadav, Bharat (2018). Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361(6403):eaar7191.
  • Franck, Christina Maria; Westermann, Jens; Bürssner, Simon; Lentz, Roswitha; Lituiev, Dmytro Sergiiovych; Boisson-Dernier, Aurélien (2018). The Protein Phosphatases ATUNIS1 and ATUNIS2 Regulate Cell Wall Integrity in Tip-Growing Cells. Plant Cell, 30(8):1906-1923.
  • Schöneberg, Torsten; Musa, Tomke; Forrer, Hans-Rudolf; Mascher, Fabio; Bucheli, Thomas D; Bertossa, Mario; Keller, Beat; Vogelgsang, Susanne (2018). Infection conditions of Fusarium graminearum in barley are variety specific and different from those in wheat. European Journal of Plant Pathology, 151(4):975-989.
  • Schreier, Tina B; Cléry, Antoine; Schläfli, Michael; Galbier, Florian; Stadler, Martha; Demarsy, Emilie; Albertini, Daniele; Maier, Benjamin A; Kessler, Felix; Hörtensteiner, Stefan; Zeeman, Samuel C; Kötting, Oliver (2018). Plastidial NAD-Dependent Malate Dehydrogenase: A Moonlighting Protein Involved in Early Chloroplast Development through Its Interaction with an FtsH12-FtsHi Protease Complex. Plant Cell, 30(8):1745-1769.
  • Kessi, Janine; Hörtensteiner, Stefan (2018). Inhibition of bacteriochlorophyll biosynthesis in the purple phototrophic bacteria Rhodospirillumrubrum and Rhodobacter capsulatus grown in the presence of a toxic concentration of selenite. BMC Microbiology, 18(1):81.
  • Grujcic, Vesna; Nuy, Julia K; Salcher, Michaela M; Shabarova, Tanja; Kasalicky, Vojtech; Boenigk, Jens; Jensen, Manfred; Simek, Karel (2018). Cryptophyta as major bacterivores in freshwater summer plankton. The ISME journal, 12(7):1668-1681.
  • Leinweber, Anne; Weigert, Michael; Kümmerli, Rolf (2018). The bacterium Pseudomonas aeruginosa senses and gradually responds to interspecific competition for iron. Evolution, 72(7):1515-1528.
  • Durgud, Meriem; Gupta, Saurabh; Ivanov, Ivan; Omidbakhshfard, M Amin; Benina, Maria; Alseekh, Saleh; Staykov, Nikola; Hauenstein, Mareike; Dijkwel, Paul P; Hörtensteiner, Stefan; Toneva, Valentina; Brotman, Yariv; Fernie, Alisdair R; Mueller-Roeber, Bernd; Gechev, Tsanko S (2018). Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant. Plant Physiology, 177(3):1319-1338.
  • Bock, Christina; Salcher, Michaela; Jensen, Manfred; Pandey, Ram Vinay; Boenigk, Jens (2018). Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes. Frontiers in Microbiology, 9:1290.
  • Dragoš, Anna; Kiesewalter, Heiko; Martin, Marivic; Hsu, Chih-Yu; Hartmann, Raimo; Wechsler, Tobias; Eriksen, Carsten; Brix, Susanne; Drescher, Knut; Stanley-Wall, Nicola; Kümmerli, Rolf; Kovács, Ákos T (2018). Division of Labor during Biofilm Matrix Production. Current Biology, 28(12):1903-1913.e5.
  • Lardi, Martina; Pessi, Gabriella (2018). Functional Genomics Approaches to Studying Symbioses between Legumes and Nitrogen-Fixing Rhizobia. High-Throughput, 7(2):15.
  • Silva, Marisa O D; Blom, Judith F; Yankova, Yana; Villiger, Jörg; Pernthaler, Jakob (2018). Priming of microbial microcystin degradation in biomass-fed gravity driven membrane filtration biofilms. Systematic and Applied Microbiology, 41(3):221-231.
  • Weidmann, Lukas; Jacquat, Christiane; Oertle, Daniel (2018). Quinoa oder die Gefahren des gesunden Essens. Swiss Medical Forum, 18(18):407-408.
  • Tylewicz, S; Petterle, A; Marttila, S; Miskolczi, P; Azeez, A; Singh, R K; Immanen, J; Mähler, N; Hvidsten, T R; Eklund, D M; Bowman, J L; Helariutta, Y; Bhalerao, R P (2018). Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication. Science, 360(6385):212-215.
  • Hedhly, Afif; Vogler, Hannes; Eichenberger, Christof; Grossniklaus, Ueli (2018). Whole-mount Clearing and Staining of Arabidopsis Flower Organs and Siliques. Journal of Visualized Experiments, (134):online.
  • Lardi, Martina; Liu, Yilei; Giudice, Gaetano; Ahrens, Christian H; Zamboni, Nicola; Pessi, Gabriella (2018). Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris. International Journal of Molecular Sciences, 19(4):1049.
  • Keller, Beat; Krattinger, Simon G (2018). A new player in race-specific resistance. Nature Plants, 4(4):197-198.
  • McNally, Kaitlin Elyse; Menardo, Fabrizio; Lüthi, Linda; Praz, Coraline Rosalie; Müller, Marion Claudia; Kunz, Lukas; Ben-David, Roi; Chandrasekhar, Kottakota; Dinoor, Amos; Cowger, Christina; Meyers, Emily; Xue, Mingfeng; Zeng, Fangsong; Gong, Shuangjun; Yu, Dazhao; Bourras, Salim; Keller, Beat (2018). Distinct domains of the AVRPM3A2/F2 avirulence protein from wheat powdery mildew are involved in immune receptor recognition and putative effector function. New Phytologist, 218(2):681-695.
  • Koller, Teresa; Brunner, Susanne; Herren, Gerhard; Hurni, Severine; Keller, Beat (2018). Pyramiding of transgenic Pm3 alleles in wheat results in improved powdery mildew resistance in the field. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 131(4):861-871.
  • Kliver, Sergei; Rayko, Mike; Komissarov, Alexey; Bakin, Evgeny; Zhernakova, Daria; Prasad, Kasavajhala; Rushworth, Catherine; Baskar, R; Smetanin, Dmitry; Schmutz, Jeremy; Rokhsar, Daniel S; Mitchell-Olds, Thomas; Grossniklaus, Ueli; Brukhin, Vladimir (2018). Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes. Genes, 9(4):185.
  • Losasso, Carmen; Eckert, Ester M; Mastrorilli, Eleonora; Villiger, Jorg; Mancin, Marzia; Patuzzi, Ilaria; Di Cesare, Andrea; Cibin, Veronica; Barrucci, Federica; Pernthaler, Jakob; Corno, Gianluca; Ricci, Antonia (2018). Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study. Frontiers in Microbiology:9:317.
  • Simonini, Sara; Stephenson, Pauline; Østergaard, Lars (2018). A molecular framework controlling style morphology in Brassicaceae. Development, 145(5):dev158105.
  • Krempaska, Natalia; Horňák, Karel; Pernthaler, Jakob (2018). Spatiotemporal distribution and microbial assimilation of polyamines in a mesotrophic lake. Limnology and Oceanography, 63(2):816-832.
  • Zhang, Qianqian; van Wijk, Ringo; Shahbaz, Muhammad; Roels, Wendy; van Schooten, Bas; Vermeer, Joop E M; Zarza, Xavier; Guardia, Aisha; Scuffi, Denise; García-Mata, Carlos; Laha, Debabrata; Williams, Phoebe; Willems, Leo A J; Ligterink, Wilco; Hoffmann-Benning, Susanne; Gillaspy, Glenda; Schaaf, Gabriel; Haring, Michel A; Laxalt, Ana M; Munnik, Teun (2018). Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure. Plant & Cell Physiology, 59(3):469-486.
  • Sapala, Aleksandra; Runions, Adam; Routier-Kierzkowska, Anne-Lise; Das Gupta, Mainak; Hong, Lilan; Hofhuis, Hugo; Verger, Stéphane; Mosca, Gabriella; Li, Chun-Biu; Hay, Angela; Hamant, Olivier; Roeder, Adrienne H K; Tsiantis, Miltos; Prusinkiewicz, Przemyslaw; Smith, Richard S (2018). Why plants make puzzle cells, and how their shape emerges. eLife, 7:e32794.
  • de Brito Francisco, Rita; Martinoia, Enrico (2018). The Vacuolar Transportome of Plant Specialized Metabolites. Plant & Cell Physiology, 59(7):1326-1336.
  • Praz, Coraline R; Menardo, Fabrizio; Robinson, Mark D; Müller, Marion C; Wicker, Thomas; Bourras, Salim; Keller, Beat (2018). Non-parent of Origin Expression of Numerous Effector Genes Indicates a Role of Gene Regulation in Host Adaption of the Hybrid Triticale Powdery Mildew Pathogen. Frontiers in Plant Science, 9:49.
  • Roth, Morgane; Florez-Rueda, Ana M; Griesser, Stephan; Paris, Margot; Städler, Thomas (2018). Incidence and developmental timing of endosperm failure in post-zygotic isolation between wild tomato lineages. Annals of Botany, 121(1):107-118.
  • Crüsemann, Max; Reher, Raphael; Schamari, Isabella; Brachmann, Alexander O; Ohbayashi, Tsubasa; Kuschak, Markus; Malfacini, Davide; Seidinger, Alexander; Pinto-Carbó, Marta; Richarz, René; Reuter, Tatjana; Kehraus, Stefan; Hallab, Asis; Attwood, Misty; Schiöth, Helgi B; Mergaert, Peter; Kikuchi, Yoshitomo; Schäberle, Till F; Kostenis, Evi; Wenzel, Daniela; Müller, Christa E; Piel, Jörn; Carlier, Aurélien; Eberl, Leo; König, Gabriele M (2018). Heterologous Expression, Biosynthetic Studies, and Ecological Function of the Selective Gq-Signaling Inhibitor FR900359. Angewandte Chemie Internationale Edition, 57(3):836-840.
  • Mosca, Gabriella; Adibi, Milad; Strauss, Soeren; Runions, Adam; Sapala, Aleksandra; Smith, Richard S (2018). Modeling Plant Tissue Growth and Cell Division. In: Mosca, Gabriella. Mathematical Modelling in Plant Biology. Switzerland: Springer, 107-138.
  • Thieme, Michael; Bucher, Etienne (2018). Transposable Elements as Tool for Crop Improvement. In: Gallusci, Philippe; Bucher, Etienne; Mirouze, Marie. View on ScienceDirect Plant Epigenetics Coming of Age for Breeding Applications. Amsterdam: Elsevier, 165-202.
  • Keller, Beat; Sánchez-Martín, Javier; Bourras, Salim (2018). Diseases affecting wheat and barley: powdery mildew. In: Burleigh, Rob; Dodds, Francis. Integrated disease management of wheat and barley. Cambridge: Burleigh Dodds Science Publishing, 4.
  • Schöneberg, Torsten; Jenny, Eveline; Wettstein, Felix E; Bucheli, Thomas D; Mascher, Fabio; Bertossa, Mario; Musa, Tomke; Seifert, Keith; Gräfenhan, Tom; Keller, Beat; Vogelgsang, Susanne (2018). Occurrence of Fusarium species and mycotoxins in Swiss oats—Impact of cropping factors. European Journal of Agronomy, 92:123-132.
  • Stritt, Christoph; Gordon, Sean P; Wicker, Thomas; Vogel, John P; Roulin, Anne C (2018). Recent activity in expanding populations and purifying selection have shaped transposable element landscapes across natural accessions of the mediterranean grass brachypodium distachyon. Genome Biology and Evolution, 10(1):304-318.
  • Sasse, Joelle; Martinoia, Enrico; Northen, Trent (2018). Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?. Trends in Plant Science, 23(1):25-41.
  • Boni, Rainer; Chauhan, Harsh; Hensel, Goetz; Roulin, Anne; Sucher, Justine; Kumlehn, Jochen; Brunner, Susanne; Krattinger, Simon G; Keller, Beat (2018). Pathogen-inducible Ta-Lr34res expression in heterologous barley confers disease resistance without negative pleiotropic effects. Plant Biotechnology Journal, 16(1):245-253.
  • da Silva, Ana Marisa Oliveira. Removal of microcystins by mature biofilms during water filtration. 2018, University of Zurich, Faculty of Science.
  • Säle, Verena. Genetic and functional diversity of arbuscular mycorrhizal fungi from agricultural soils. 2018, University of Zurich, Faculty of Science.
  • Pinto Carbó, Marta Adriana. Leaf nodule symbiosis in the genomic era : new insights into bacterial symbiont evolution, function and transmission. 2018, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Peter, Nicole Noemi Anne. Chlorophyll breakdown : regulation of pheophorbide a oxygenase. 2018, University of Zurich, Faculty of Science.
  • Nigro, Arianna. Sugar metabolism in the guard cells of Arabidopsis thaliana. 2018, University of Zurich, Faculty of Science.
  • Lardi, Martina. Unravelling the molecular basis of the nitrogen-fixing symbiosis between legumes and beta-rhizobia. 2018, University of Zurich, Faculty of Science.
  • Fabbri, Carlotta. Microbial metal mobilization from metal-containing solids : a study of Penicillium, Halothiobacillus and Pseudomonas. 2018, University of Zurich, Faculty of Science.
  • Richter, Anja M; Fazli, Mustafa; Schmid, Nadine; Shilling, Rebecca; Suppiger, Angela; Givskov, Michael; Eberl, Leo; Tolker-Nielsen, Tim (2018). Key Players and Individualists of Cyclic-di-GMP Signaling in Burkholderia cenocepacia. Frontiers in Microbiology, 9:3286.
  • Liu, Qinsong; Vain, Thomas; Viotti, Corrado; Doyle, Siamsa M; Tarkowská, Danuše; Novák, Ondřej; Zipfel, Cyril; Sitbon, Folke; Robert, Stéphanie; Hofius, Daniel (2018). Vacuole Integrity Maintained by DUF300 Proteins Is Required for Brassinosteroid Signaling Regulation. Molecular Plant, 11(4):553-567.
  • Smakowska-Luzan, Elwira; Mott, G Adam; Parys, Katarzyna; Stegmann, Martin; Howton, Timothy C; Layeghifard, Mehdi; Neuhold, Jana; Lehner, Anita; Kong, Jixiang; Grünwald, Karin; Weinberger, Natascha; Satbhai, Santosh B; Mayer, Dominik; Busch, Wolfgang; Madalinski, Mathias; Stolt-Bergner, Peggy; Provart, Nicholas J; Mukhtar, M Shahid; Zipfel, Cyril; Desveaux, Darrell; Guttman, David S; Belkhadir, Youssef (2018). An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Nature, 553:342-346.
  • Ziemann, Sebastian; van der Linde, Karina; Lahrmann, Urs; Acar, Beyda; Kaschani, Farnusch; Colby, Tom; Kaiser, Markus; Ding, Yezhang; Schmelz, Eric; Huffaker, Alisa; Holton, Nicholas; Zipfel, Cyril; Doehlemann, Gunther (2018). An apoplastic peptide activates salicylic acid signalling in maize. Nature Plants, 4:172-180.
  • Wang, Jinlong; Grubb, Lauren E; Wang, Jiayu; Liang, Xiangxiu; Li, Lin; Gao, Chulei; Ma, Miaomiao; Feng, Feng; Li, Meng; Li, Lei; Zhang, Xiaojuan; Yu, Feifei; Xie, Qi; Chen, She; Zipfel, Cyril; Monaghan, Jacqueline; Zhou, Jian-Min (2018). A Regulatory Module Controlling Homeostasis of a Plant Immune Kinase. Molecular Cell, 69(3):493-504.e6.
  • Engelsdorf, Timo; Gigli-Bisceglia, Nora; Veerabagu, Manikandan; McKenna, Joseph F; Vaahtera, Lauri; Augstein, Frauke; Van der Does, Dieuwertje; Zipfel, Cyril; Hamann, Thorsten (2018). The plant cell wall integrity maintenance and immune signaling systems cooperate to control stress responses inArabidopsis thaliana. Science Signaling, 11(536):eaao3070.
  • Bender, Kyle W; Zipfel, Cyril (2018). Plant G-protein activation: connecting to plant receptor kinases. Cell Research, 28(7):697-698.
  • Gétaz, Michael. Genomic investigations of the strawberry quarantine bacterial pathogen Xanthomonas fragariae for a better integrative pest management. 2018, University of Zurich, Faculty of Science.
  • Perraki, Artemis; Gronnier, Julien; Gouguet, Paul; Boudsocq, Marie; Deroubaix, Anne-Flore; Simon, Vincent; German-Retana, Sylvie; Legrand, Anthony; Habenstein, Birgit; Zipfel, Cyril; Bayer, Emmanuelle; Mongrand, Sébastien; Germain, Véronique (2018). REM1.3's phospho-status defines its plasma membrane nanodomain organization and activity in restricting PVX cell-to-cell movement. PLoS Pathogens, 14(11):e1007378.
  • Tsuchimatsu, Takashi; Kakui, Hiroyuki; Yamazaki, Misako; Marona, Cindy; Tsutsui, Hiroki; Hedhly, Afif; Meng, Dazhe; Sato, Yutaka; Stadler, Thomas; Grossniklaus, Ueli; Kanaoka, Masahiro M; Lenhard, Michael; Nordborg, Magnus; Shimizu, Kentaro K (2018). Adaptive Reduction of Male Gamete Number in a Selfing Species. bioRxiv 272757, Cold Spring Harbor Laboratory.
  • Jacquat, Christiane (2018). Airolo-Madrano “In Grop”: Archaeobotanical Analysis – Palaeoenvironment and Mountain Economies in the Bronze and Iron Ages. In: Della Casa, Philippe. The Leventina Prehistoric Landscape. Switzerland: Chronos Verlag, 171-189.
  • Roth, Morgane; Florez-Rueda, Ana M; Staedler, Thomas (2018). Differences in effective ploidy as drivers of genome-wide endosperm expression asymmetries and seed failure in wild tomato hybrids. bioRxiv 459925, Cold Spring Harbor Laboratory.
  • Thind, Anupriya Kaur. Cultivar-specific long-range chromosome assembly permits rapid gene isolation and high-quality comparative analysis in hexaploid wheat. 2018, University of Zurich, Faculty of Science.
  • Schubert, Jasmin Anita. Investigating the mechanism and role of linker histone dynamics during plant reproduction. 2018, University of Zurich, Faculty of Science.
  • Deppe, Johannes. Physiological characterization of the wheat ABC transporter Lr34. 2018, University of Zurich, Faculty of Science.
  • Ma, Xin; Keller, Beat; McDonald, Bruce A; Palma-Guerrero, Javier; Wicker, Thomas (2018). Comparative transcriptomics reveals how wheat responds to infection by Zymoseptoria tritici. Molecular Plant-Microbe Interactions, 31(4):420-431.
  • Das, Aditi; Guyer, Luzia; Hörtensteiner, Stefan (2018). Chlorophyll and Chlorophyll Catabolite Analysis by HPLC. In: Guo, Yongfeng. Plant Senescence : Methods and Protocols. New York: Springer, 223-235.
  • Rövekamp, Moritz. Insights from Marchantia polymorpha into the evolutionary development of land plant sexual reproduction. 2018, University of Zurich, Faculty of Science.
  • Leinweber, Anne. The struggle for iron: how it affects cooperation, competition and biodiversity in bacterial communities. 2018, University of Zurich, Faculty of Science.
  • Liu, Yilei; Pessi, Gabriella; Riedel, Katharina; Eberl, Leo (2018). Identification of AHL- and BDSF-Controlled Proteins in Burkholderia cenocepacia by Proteomics. Methods in Molecular Biology, 1673:193-202.
  • Šimek, Karel; Grujčić, Vesna; Hahn, Martin W; Horňák, Karel; Jezberová, Jitka; Kasalický, Vojtěch; Nedoma, Jiří; Salcher, Michaela M; Shabarova, Tanja (2018). Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnology and Oceanography, 63(1):484-502.
  • Ndinyanka Fabrice, Tohnyui; Vogler, Hannes; Draeger, Christian; Munglani, Gautam; Gupta, Shibu; Herger, Aline Galatea; Knox, Paul; Grossniklaus, Ueli; Ringli, Christoph (2018). LRX Proteins play a crucial role in pollen grain and pollen tube cell wall development. Plant Physiology, 176(3):1981-1992.
  • Fabrice, Tohnyui Ndinyanka; Cherkezyan, Lusik; Ringli, Christoph; Baroux, Célia (2018). Transmission electron microscopy imaging to analyze chromatin density distribution at the nanoscale level. In: Bemer, Marian; Baroux, Célia. Plant Chromatin Dynamics : Methods and Protocols. New York, NY: Springer, 633-651.
  • Müller, Thomas; Schierscher-Viret, Beate; Fossati, Dario; Brabant, Cécile; Schori, Arnold; Keller, Beat; Krattinger, Simon G (2018). Unlocking the diversity of genebanks: whole-genome marker analysis of Swiss bread wheat and spelt. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 131(2):407-416.
  • Sucher, J; Menardo, F; Praz, C R; Boni, R; Krattinger, S G; Keller, B (2018). Transcriptional profiling reveals no response of fungal pathogens to the durable, quantitative Lr34 disease resistance gene of wheat. Plant Biology, 67(4):792-798.
  • Jacquat, Christiane; Della Casa, Philippe (2018). Airolo-Madrano (TI): Palaeoenvironment and subsistence strategies of a hilltop settlement in the southern Swiss Alps during the Bronze and Iron Ages. Quaternary International: The Journal of the International Union for Quaternary Research, 484:32-43.

• 2017

  • Stegmann, Martin; Zipfel, Cyril (2017). Complex regulation of plant sex by peptides. Science, 358(6370):1544-1545.
  • Wicker, Thomas; Schulman, Alan H; Tanskanen, Jaakko; Spannagl, Manuel; Twardziok, Sven; Mascher, Martin; Springer, Nathan M; Li, Qing; Waugh, Robbie; Li, Chengdao; Zhang, Guoping; Stein, Nils; Mayer, Klaus F. X; Gundlach, Heidrun (2017). The repetitive landscape of the 5100 Mbp barley genome. Mobile DNA:8:22.
  • Gordon, Sean P; Contreras-Moreira, Bruno; Woods, Daniel P; Des Marais, David L; Burgess, Diane; Shu, Shengqiang; Stritt, Christoph; Roulin, Anne C; Schackwitz, Wendy; Tyler, Ludmila; Martin, Joel; Lipzen, Anna; Dochy, Niklas; Phillips, Jeremy; Barry, Kerrie; Geuten, Koen; Budak, Hikmet; Juenger, Thomas E; Amasino, Richard; Caicedo, Ana L; Goodstein, David; Davidson, Patrick; Mur, Luis A J; Figueroa, Melania; Freeling, Michael; Catalan, Pilar; Vogel, John P (2017). Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nature Communications, 8(1):2184.
  • Lardi, Martina; Liu, Yilei; Purtschert, Gabriela; Bolzan de Campos, Samanta; Pessi, Gabriella (2017). Transcriptome Analysis of Paraburkholderia phymatum under Nitrogen Starvation and during Symbiosis with Phaseolus Vulgaris. Genes, 8(12):E389.
  • Praz, Coraline R; Bourras, Salim; Zeng, Fansong; Sánchez-Martín, Javier; Menardo, Fabrizio; Xue, Minfeng; Yang, Lijun; Roffler, Stefan; Böni, Rainer; Herren, Gerard; McNally, Kaitlin E; Ben-David, Roi; Parlange, Francis; Oberhaensli, Simone; Flückiger, Simon; Schäfer, Luisa K; Wicker, Thomas; Yu, Dazhao; Keller, Beat (2017). AvrPm2 encodes an RNase-like avirulence effector which is conserved in the two different specialized forms of wheat and rye powdery mildew fungus. New Phytologist, 213(3):1301-1314.
  • Christ, Bastien; Hochstrasser, Ramon; Guyer, Luzia; Francisco, Rita; Aubry, Sylvain; Hörtensteiner, Stefan; Weng, Jing-Ke (2017). Non-specific activities of the major herbicide-resistance gene BAR. Nature Plants, 3(12):937-945.
  • Luo, Ming-Cheng; Gu, Yong Q; et al; Wicker, Thomas; Dvořák, Jan (2017). Genome sequence of the progenitor of the wheat D genome Aegilops tauschii. Nature:498-502.
  • Higgins, Steven; Sanchez-Contreras, Maria; Gualdi, Stefano; Pinto-Carbó, Marta; Carlier, Aurélien; Eberl, Leo (2017). The Essential Genome of Burkholderia cenocepacia H111. Journal of Bacteriology, 199(22):e00260-17.
  • Ruinelli, Michela. Genomic Investigations of Members of the Pseudomonas syringae Species Complex Associated with Prunus spp. and Kiwifruit. 2017, University of Zurich, Faculty of Science.
  • Menardo, Fabrizio; Praz, Coraline R; Wicker, Thomas; Keller, Beat (2017). Rapid turnover of effectors in grass powdery mildew (Blumeria graminis). BMC Evolutionary Biology, 17(1):223.
  • Ndinyanka Fabrice, Tohnyui; Kaech, Andres; Barmettler, Gery; Eichenberger, Christof; Knox, J Paul; Grossniklaus, Ueli; Ringli, Christoph (2017). Efficient preparation of Arabidopsis pollen tubes for ultrastructural analysis using chemical and cryo-fixation. BMC Plant Biology, 17:176.
  • Park, Jiyoung; Lee, Youngsook; Martinoia, Enrico; Geisler, Markus (2017). Plant hormone transporters: what we know and what we would like to know. BMC Biology, 15(1):93.
  • Yankova, Yana; Neuenschwander, Stefan; Köster, Oliver; Posch, Thomas (2017). Abrupt stop of deep water turnover with lake warming: Drastic consequences for algal primary producers. Scientific Reports, 7(1):13770.
  • Bowman, John L; Kohchi, Takayuki; Yamato, Katsuyuki T; Jenkins, Jerry; Shu, Shengqiang; Ishizaki, Kimitsune; Yamaoka, Shohei; Nishihama, Ryuichi; Nakamura, Yasukazu; Berger, Frédéric; Adam, Catherine; Aki, Shiori Sugamata; Althoff, Felix; Araki, Takashi; Arteaga-Vazquez, Mario A; Balasubrmanian, Sureshkumar; Barry, Kerrie; Bauer, Diane; Boehm, Christian R; Briginshaw, Liam; Caballero-Perez, Juan; Catarino, Bruno; Chen, Feng; Chiyoda, Shota; Chovatia, Mansi; Davies, Kevin M; Delmans, Mihails; Demura, Taku; Dierschke, Tom; Dolan, Liam; Rövekamp, Moritz; Schmid, Marc W; et al (2017). Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell, 171(2):287-304.
  • Yang, Ping; Herren, Gerhard; Krattinger, Simon; Keller, Beat (2017). Large-scale maize seedling infection with exserohilum turcicum in the greenhouse. Bio-protocol, 7(19):e2567.
  • Gujas, Bojan; Cruz, Tiago M D; Kastanaki, Elizabeth; Vermeer, Joop E M; Munnik, Teun; Rodriguez-Villalon, Antia (2017). Perturbing phosphoinositide homeostasis oppositely affects vascular differentiation in Arabidopsis thaliana roots. Development, 144(19):3578-3589.
  • D’Ambrosio, Juan Martín; Couto, Daniel; Fabro, Georgina; Scuffi, Denise; Lamattina, Lorenzo; Munnik, Teun; Andersson, Mats X; Álvarez, María E; Zipfel, Cyril; Laxalt, Ana M (2017). Phospholipase C2 Affects MAMP-Triggered Immunity by Modulating ROS Production. Plant Physiology, 175(2):970-981.
  • Eisenach, Cornelia; Baetz, Ulrike; Huck, Nicola V; Zhang, Jingbo; De Angeli, Alexis; Beckers, Gerold J M; Martinoia, Enrico (2017). ABA-induced stomatal closure involves ALMT4, a phosphorylation-dependent vacuolar anion channel of arabidopsis. Plant Cell, 29(10):2552-2569.
  • Granato, Elisa T; Kümmerli, Rolf (2017). The path to re-evolve cooperation is constrained in Pseudomonas aeruginosa. BMC Evolutionary Biology, 17(1):214.
  • Stoeckle, Dorothee; Thellmann, Martha; Vermeer, Joop E M (2017). Breakout-lateral root emergence in Arabidopsis thaliana. Current Opinion in Plant Biology, 41:67-72.
  • Pitsch, Gianna; Adamec, Lubomír; Dirren, Sebastian; Nitsche, Frank; Šimek, Karel; Sirová, Dagmara; Posch, Thomas (2017). The green tetrahymena utriculariae n. sp. (ciliophora, oligohymenophorea) with its endosymbiotic algae (micractinium sp.), living in traps of a carnivorous aquatic plant. Journal of Eukaryotic Microbiology, 64(3):322-335.
  • Boschi, Federico; Schvartzman, Claudia; Murchio, Sara; Ferreira, Virginia; Siri, Maria I; Galván, Guillermo A; Smoker, Matthew; Stransfeld, Lena; Zipfel, Cyril; Vilaró, Francisco L; Dalla-Rizza, Marco (2017). Enhanced Bacterial Wilt Resistance in Potato Through Expression of Arabidopsis EFR and Introgression of Quantitative Resistance from Solanum commersonii. Frontiers in Plant Science, 8:1642.
  • Schöneberg, Torsten. Occurrence and Epidemiology of Fusarium Species in Barley and Oats. 2017, University of Zurich, Faculty of Science.
  • Šimek, Karel; Pitsch, Gianna; Salcher, Michaela M; Sirová, Dagmara; Shabarova, Tanja; Adamec, Lubomír; Posch, Thomas (2017). Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa. Journal of Eukaryotic Microbiology, 64(3):336-348.
  • Guyer, Luzia; Salinger, Kathrin; Krügel, Undine; Hörtensteiner, Stefan (2017). Catalytic and structural properties of pheophytinase, the phytol esterase involved in chlorophyll breakdown. Journal of Experimental Botany, 69:879-889.
  • Granato, Elisa. Evolution of Cooperation and Virulence in an Opportunistic Pathogen. 2017, University of Zurich, Faculty of Science.
  • Kuai, Benke; Chen, Junyi; Hörtensteiner, Stefan (2017). The biochemistry and molecular biology of chlorophyll breakdown. Journal of Experimental Botany, 69(4):751-767.
  • Toyofuku, Masanori; Cárcamo-Oyarce, Gerardo; Yamamoto, Tatsuya; Eisenstein, Fabian; Hsiao, Chien-Chi; Kurosawa, Masaharu; Gademann, Karl; Pilhofer, Martin; Nomura, Nobuhiko; Eberl, Leo (2017). Prophage-triggered membrane vesicle formation through peptidoglycan damage in Bacillus subtilis. Nature Communications, 8:481.
  • Imkampe, Julia; Halter, Thierry; Huang, Shuhua; Schulze, Sarina; Mazzotta, Sara; Schmidt, Nikola; Manstretta, Raffaele; Postel, Sandra; Wierzba, Michael; Yang, Yong; van Dongen, Walter M A M; Stahl, Mark; Zipfel, Cyril; Goshe, Michael B; Clouse, Steven; de Vries, Sacco C; Tax, Frans; Wang, Xiaofeng; Kemmerling, Birgit (2017). The Arabidopsis Leucine-Rich Repeat Receptor Kinase BIR3 Negatively Regulates BAK1 Receptor Complex Formation and Stabilizes BAK1. Plant Cell, 29(9):2285-2303.
  • Butaitė, Elena; Baumgartner, Michael; Wyder, Stefan; Kümmerli, Rolf (2017). Siderophore cheating and cheating resistance shape competition for iron in soil and freshwater Pseudomonas communities. Nature Communications, 8(1):414.
  • Thind, Anupriya K; Wicker, Thomas; Krattinger, Simon G (2017). Rapid identification of rust resistance genes through cultivar-specific de novo chromosome assemblies. In: Periyannan, Sam. Wheat Rust Diseases. New York, NY: Springer, 245-255.
  • Do, Thanh Ha Thi; Martinoia, Enrico; Lee, Youngsook (2017). Functions of ABC transporters in plant growth and development. Current Opinion in Plant Biology, 41:32-38.
  • Boni, Rainer. Functional Characterization of the Wheat Disease Resistance Gene Lr34 in Heterologous Barley. 2017, University of Zurich, Faculty of Science.
  • Boutrot, Freddy; Zipfel, Cyril (2017). Function, Discovery, and Exploitation of Plant Pattern Recognition Receptors for Broad-Spectrum Disease Resistance. Annual Review of Phytopathology, 55:257-286.
  • Singh, Vijayata; Perraki, Artemis; Kim, Sang Y; Shrivastava, Stuti; Lee, Jae H; Zhao, Youfu; Schwessinger, Benjamin; Oh, Man-Ho; Marshall-Colon, Amy; Zipfel, Cyril; Huber, Steven C (2017). Tyrosine-610 in the Receptor Kinase BAK1 Does Not Play a Major Role in Brassinosteroid Signaling or Innate Immunity. Frontiers in Plant Science, 8:1273.
  • Dirren, Sebastian; Pitsch, Gianna; Silva, Marisa O D; Posch, Thomas (2017). Grazing of Nuclearia thermophila and Nuclearia delicatula (Nucleariidae, Opisthokonta) on the toxic cyanobacterium Planktothrix rubescens. European Journal of Protistology, 60:87-101.
  • Simonini, Sara; Bencivenga, Stefano; Trick, Martin; Østergaard, Lars (2017). Auxin-Induced Modulation of ETTIN Activity Orchestrates Gene Expression in Arabidopsis. Plant Cell, 29(8):1864-1882.
  • Fazli, Mustafa; Rybtke, Morten; Steiner, Elisabeth; Weidel, Elisabeth; Berthelsen, Jens; Groizeleau, Julie; Bin, Wu; Zhi, Boo Zhao; Yaming, Zhang; Kaever, Volkhard; Givskov, Michael; Hartmann, Rolf W; Eberl, Leo; Tolker-Nielsen, Tim (2017). Regulation of Burkholderia cenocepacia biofilm formation by RpoN and the c-di-GMP effector BerB. MicrobiologyOpen, 6(4):e00480.
  • Thalmann, Matthias. The Function and Regulation of Starch Degradation during Plant Responses to Abiotic Stress. 2017, University of Zurich, Faculty of Science.
  • Khare, Deepa; Choi, Hyunju; Huh, Sung Un; Bassin, Barbara; Kim, Jeongsik; Martinoia, Enrico; Sohn, Kee Hoon; Paek, Kyung-Hee; Lee, Youngsook (2017). Arabidopsis ABCG34 contributes to defense against necrotrophic pathogens by mediating the secretion of camalexin. Proceedings of the National Academy of Sciences of the United States of America, 114(28):E5712-E5720.
  • Agnoli, Kirsty; Freitag, Roman; Gomes, Margarida C; Jenul, Christian; Suppiger, Angela; Mannweiler, Olga; Frauenknecht, Carmen; Janser, Daniel; Vergunst, Annette C; Eberl, Leo (2017). Use of Synthetic Hybrid Strains To Determine the Role of Replicon 3 in Virulence of the Burkholderia cepacia Complex. Applied and Environmental Microbiology, 83(13):e00461-17.
  • Vermeer, Joop E M; van Wijk, Ringo; Goedhart, Joachim; Geldner, Niko; Chory, Joanne; Gadella, Theodorus W J; Munnik, Teun (2017). In Vivo Imaging of Diacylglycerol at the Cytoplasmic Leaflet of Plant Membranes. Plant & Cell Physiology, 58(7):1196-1207.
  • Weigert, Michael; Kümmerli, Rolf (2017). The physical boundaries of public goods cooperation between surface-attached bacterial cells. Proceedings of the Royal Society of London, Series B: Biological Sciences, 284(1858):20170631.
  • Eversole, Kellye; Rogers, Jane; Keller, Beat; Appels, Rudi; Feuillet, Catherine (2017). Sequencing and assembly of the wheat genome. In: Langridge, Peter. Achieving sustainable cultivation of wheat Volume 1: Breeding, quality traits, pests and diseases. Cambridge, UK: Burleigh Dodds Science Publishing, 25-52.
  • Ezer, Daphne; Jung, Jae-Hoon; Lan, Hui; Biswas, Surojit; Gregoire, Laura; Box, Mathew S; Charoensawan, Varodom; Cortijo, Sandra; Lai, Xuelei; Stöckle, Dorothee; Zubieta, Chloe; Jaeger, Katja E; Wigge, Philip A (2017). The evening complex coordinates environmental and endogenous signals in Arabidopsis. Nature Plants, 3:17087.
  • Yankova, Yana. Effects of Lake Warming on Cyanobacterial and Algal Bloom Dynamics. 2017, University of Zurich, Faculty of Science.
  • Van der Does, Dieuwertje; Boutrot, Freddy; Engelsdorf, Timo; Rhodes, Jack; McKenna, Joseph F; Vernhettes, Samantha; Koevoets, Iko; Tintor, Nico; Veerabagu, Manikandan; Miedes, Eva; Segonzac, Cécile; Roux, Milena; Breda, Alice S; Hardtke, Christian S; Molina, Antonio; Rep, Martijn; Testerink, Christa; Mouille, Grégory; Höfte, Herman; Hamann, Thorsten; Zipfel, Cyril (2017). The Arabidopsis leucine-rich repeat receptor kinase MIK2/LRR-KISS connects cell wall integrity sensing, root growth and response to abiotic and bioticstresses. PLoS Genetics, 13(6):e1006832.
  • Baumgartner, Michael; Roffler, Stefan; Wicker, Thomas; Pernthaler, Jakob (2017). Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment. The ISME journal, 11(10):2258-2266.
  • Hu, Chengzhi; Zhang, Qi; Meyer, Tobias; Vogler, Hannes; Burri, Jan T; Shamsudhin, Naveen; Grossniklaus, Ueli; Nelson, Bradley J (2017). In vivo tracking and measurement of pollen tube vesicle motion. In: 2017 IEEE International Conference on Robotics and Automation (ICRA), Singapore, 29 May 2017 - 3 June 2017. IEEE, 3575-3580.
  • Santelia, Diana; Lunn, John E (2017). Transitory starch metabolism in guard cells: unique features for a unique function. Plant Physiology, 174(2):539-549.
  • Kang, Joohyun; Lee, Youngsook; Sakakibara, Hitoshi; Martinoia, Enrico (2017). Cytokinin transporters: GO and STOP in signaling. Trends in Plant Science, 22(6):455-461.
  • Toyofuku, Masanori; Morinaga, Kana; Hashimoto, Yohei; Uhl, Jenny; Shimamura, Hiroko; Inaba, Hideki; Schmitt-Kopplin, Philippe; Eberl, Leo; Nomura, Nobuhiko (2017). Membrane vesicle-mediated bacterial communication. The ISME journal, 11(6):1504-1509.
  • Ndinyanka Fabrice, Tohnyui. An Integrated Systems Understanding of the Dynamic Interplay between Plant Cell Growth and Pollen Tube Cell Wall Development. 2017, University of Zurich, Faculty of Science.
  • Nadal, Marina; Sawers, Ruairidh; Naseem, Shamoon; Bassin, Barbara; Kulicke, Corinna; Sharman, Abigail; An, Gynheung; An, Kyungsook; Ahern, Kevin R; Romag, Amanda; Brutnell, Thomas P; Gutjahr, Caroline; Geldner, Niko; Roux, Christophe; Martinoia, Enrico; Konopka, James B; Paszkowski, Uta (2017). An N-acetylglucosamine transporter required for arbuscular mycorrhizal symbioses in rice and maize. Nature Plants, 3:17073.
  • Pernthaler, Jakob (2017). Competition and niche separation of pelagic bacteria in freshwater habitats. Environmental Microbiology, 19(6):2133-2150.
  • Thind, Anupriya Kaur; Wicker, Thomas; Šimková, Hana; Fossati, Dario; Moullet, Odile; Brabant, Cécile; Vrána, Jan; Doležel, Jaroslav; Krattinger, Simon G (2017). Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly. Nature Biotechnology, 35(8):793-796.
  • Nguyen, Chi Tam; Martinoia, Enrico; Farmer, Edward E (2017). Emerging jasmonate transporters. Molecular Plant, 10(5):659-661.
  • Thalmann, Matthias; Santelia, Diana (2017). Starch as a determinant of plant fitness under abiotic stress. New Phytologist, 214(3):943-951.
  • Schmid, Nadine; Suppiger, Angela; Steiner, Elisabeth; Pessi, Gabriella; Kaever, Volkhard; Fazli, Mustafa; Tolker-Nielsen, Tim; Jenal, Urs; Eberl, Leo (2017). High intracellular c-di-GMP levels antagonize quorum sensing and virulence gene expression in Burkholderia cenocepacia H111. Microbiology, 163(5):754-764.
  • Mascher, Martin; Gundlach, Heidrun; et al; Wicker, Thomas; Stein, Nils (2017). A chromosome conformation capture ordered sequence of the barley genome. Nature, 544(7651):427-433.
  • Keller, Beat; Krattinger, Simon G (2017). Plant science: Genomic compartments in barley. Nature, 544(7651):424-425.
  • Schnippenkoetter, Wendelin; Lo, Clive; Liu, Guoquan; Dibley, Katherine; Chan, Wai Lung; White, Jodie; Milne, Ricky; Zwart, Alexander; Kwong, Eunjung; Keller, Beat; Godwin, Ian; Krattinger, Simon G; Lagudah, Evans (2017). The wheat Lr34 multipathogen resistance gene confers resistance to anthracnose and rust in sorghum. Plant Biotechnology Journal, 15(11):1387-1396.
  • Mendy, Badou; Wang’ombe, Mary Wanjiku; Radakovic, Zoran S; Holbein, Julia; Ilyas, Muhammad; Chopra, Divykriti; Holton, Nick; Zipfel, Cyril; Grundler, Florian M W; Siddique, Shahid (2017). Arabidopsis leucine-rich repeat receptor–like kinase NILR1 is required for induction of innate immunity to parasitic nematodes. PLoS Pathogens, 13(4):e1006284.
  • Bucher, Rahel; Veyel, Daniel; Willmitzer, Lothar; Krattinger, Simon G; Keller, Beat; Bigler, Laurent (2017). Combined GC- and UHPLC-HR-MS based metabolomics to analyze durable anti-fungal resistance processes in cereals. CHIMIA International Journal for Chemistry, 71(4):156-159.
  • Souza, Clarice de Azevedo; Li, Shundai; Lin, Andrew Z; Boutrot, Freddy; Grossmann, Guido; Zipfel, Cyril; Somerville, Shauna C (2017). Cellulose-Derived Oligomers Act as Damage-Associated Molecular Patterns and Trigger Defense-Like Responses. Plant Physiology, 173(4):2383-2398.
  • Sucher, Justine; Boni, Rainer; Yang, Ping; Rogowsky, Peter; Büchner, Heike; Kastner, Christine; Kumlehn, Jochen; Krattinger, Simon G; Keller, Beat (2017). The durable wheat disease resistance gene Lr34 confers common rust and northern corn leaf blight resistance in maize. Plant Biotechnology Journal, 15(4):489-496.
  • Feehan, Joanna M; Scheibel, Katherine E; Bourras, Salim; Underwood, William; Keller, Beat; Somerville, Shauna C (2017). Purification of high molecular weight genomic DNA from powdery mildew for long-read sequencing. Journal of Visualized Experiments, (121):online.
  • Imperiali, Nicola; Dennert, Francesca; Schneider, Jana; Laessle, Titouan; Velatta, Christelle; Fesselet, Marie; Wyler, Michele; Mascher, Fabio; Mavrodi, Olga; Mavrodi, Dmitri; Maurhofer, Monika; Keel, Christoph (2017). Relationships between root pathogen resistance, abundance and expression of pseudomonas antimicrobial genes, and soil properties in representative swiss agricultural soils. Frontiers in Plant Science, 8:427.
  • Hyles, J; Vautrin, S; Pettolino, F; MacMillan, C; Stachurski, Z; Breen, J; Berges, H; Wicker, T; Spielmeyer, W (2017). Repeat-length variation in a wheat cellulose synthase-like gene is associated with altered tiller number and stem cell wall composition. Journal of Experimental Botany, 68(7):1519-1529.
  • Grossmann, Jonas; Fernández, Helena; Chaubey, Pururawa M; Valdés, Ana E; Gagliardini, Valeria; Cañal, María J; Russo, Giancarlo; Grossniklaus, Ueli (2017). Proteogenomic analysis greatly expands the identification of proteins related to reproduction in the apogamous fern dryopteris affinis ssp. affinis. Frontiers in Plant Science, 8:336.
  • Zipfel, Cyril; Oldroyd, Giles E D (2017). Plant signalling in symbiosis and immunity. Nature, 543(7645):328-336.
  • Bender, Kyle W; Blackburn, R Kevin; Monaghan, Jacqueline; Derbyshire, Paul; Menke, Frank L H; Zipfel, Cyril; Goshe, Michael B; Zielinski, Raymond E; Huber, Steven C (2017). Autophosphorylation-based Calcium (Ca2+) Sensitivity Priming and Ca2+/Calmodulin Inhibition of Arabidopsis thaliana Ca2+-dependent Protein Kinase 28 (CPK28). Journal of Biological Chemistry, 292(10):3988-4002.
  • Rinaldo, Amy; Gilbert, Brian; Boni, Rainer; Krattinger, Simon G; Singh, Davinder; Park, Robert F; Lagudah, Evans; Ayliffe, Michael (2017). The Lr34 adult plant rust resistance gene provides seedling resistance in durum wheat without senescence. Plant Biotechnology Journal, 15(7):894-905.
  • Bücherl, Christoph A; Jarsch, Iris K; Schudoma, Christian; Segonzac, Cécile; Mbengue, Malick; Robatzek, Silke; MacLean, Daniel; Ott, Thomas; Zipfel, Cyril (2017). Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains. eLife, 6:e25114.
  • Shabarova, Tanja; Kasalický, Vojtěch; Šimek, Karel; Nedoma, Jiří; Znachor, Petr; Posch, Thomas; Pernthaler, Jakob; Salcher, Michaela M (2017). Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology, 19(3):1296-1309.
  • Krattinger, Simon G; Keller, Beat (2017). Resistance: Double gain with one gene. Nature Plants, 3:17019.
  • Kuhn, Benjamin M; Nodzyński, Tomasz; Errafi, Sanae; Bucher, Rahel; Gupta, Shibu; Aryal, Bibek; Dobrev, Petre; Bigler, Laurent; Geisler, Markus; Zažímalová, Eva; Friml, Jiří; Ringli, Christoph (2017). Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity. Scientific Reports, 7:41906.
  • Menardo, Fabrizio; Wicker, Thomas; Keller, Beat (2017). Reconstructing the evolutionary history of powdery mildew lineages (Blumeria graminis) at different evolutionary time scales with NGS data. Genome Biology and Evolution, 9(2):446-456.
  • Shubchynskyy, Volodymyr; Boniecka, Justyna; Schweighofer, Alois; Simulis, Justinas; Kvederaviciute, Kotryna; Stumpe, Michael; Mauch, Felix; Balazadeh, Salma; Mueller-Roeber, Bernd; Boutrot, Freddy; Zipfel, Cyril; Meskiene, Irute (2017). Protein phosphatase AP2C1 negatively regulates basal resistance and defense responses to Pseudomonas syringae. Journal of Experimental Botany, 68(5):1169-1183.
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