Publications IPMB

ZORA Publication List

Publications

• 2014

  • Etherington, Graham J; Monaghan, Jacqueline; Zipfel, Cyril; Maclean, Dan (2014). Mapping mutations in plant genomes with the user-friendly web application CandiSNP. Plant Methods, 10(1):41.
  • Kessler, S A; Lindner, H; Jones, D S; Grossniklaus, U (2014). Functional analysis of related CrRLK1L receptor-like kinases in pollen tube reception. EMBO Reports, 16(1):107-115.
  • Dudnik, Alexey; Dudler, Robert (2014). Virulence determinants of Pseudomonas syringae strains isolated from grasses in the context of a small type III effector repertoire. BMC Microbiology, 14:304.
  • Kohler, Esther. Structural characterization, bioactivity and biodegradation of cyanobacterial toxins. 2014, University of Zurich, Faculty of Science.
  • Bailly, Aurélien; Groenhagen, Ulrike; Schulz, Stefan; Geisler, Markus; Eberl, Leo; Weisskopf, Laure (2014). The inter-kingdom volatile signal indole promotes root development by interfering with auxin signalling. The Plant Journal, 80(5):758-771.
  • Kümmerli, Rolf; Schiessl, Konstanze T; Waldvogel, Tuija; McNeill, Kristopher; Ackermann, Martin (2014). Habitat structure and the evolution of diffusible siderophores in bacteria. Ecology Letters, 17(12):1536-1544.
  • Monaghan, Jacqueline; Matschi, Susanne; Shorinola, Oluwaseyi; Rovenich, Hanna; Matei, Alexandra; Segonzac, Cécile; Malinovsky, Frederikke Gro; Rathjen, John P; Maclean, Dan; Romeis, Tina; Zipfel, Cyril (2014). The Calcium-Dependent Protein Kinase CPK28 Buffers Plant Immunity and Regulates BIK1 Turnover. Cell Host & Microbe, 16(5):605-615.
  • Mérai, Zsuzsanna; Chumak, Nina; García-Aguilar, Marcelina; Hsieh, Tzung-Fu; Nishimura, Toshiro; Schoft, Vera K; Bindics, János; Ślusarz, Lucyna; Arnoux, Stéphanie; Opravil, Susanne; Mechtler, Karl; Zilberman, Daniel; Fischer, Robert L; Tamaru, Hisashi (2014). The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes. Proceedings of the National Academy of Sciences of the United States of America, 111(45):16166-16171.
  • Tavor-Deslex, Deborah. Cytokinin Function in the Developing Root Meristem of Arabidopsis thaliana Embryos. 2014, University of Zurich, Faculty of Science.
  • Song, Won-Yong; Yamaki, Tomohiro; Yamaji, Naoki; Ko, Donghwi; Jung, Ki-Hong; Fujii-Kashino, Miho; An, Gynheung; Martinoia, Enrico; Lee, Youngsook; Feng Ma, Jian (2014). A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain. Proceedings of the National Academy of Sciences of the United States of America, 111(44):15699-15704.
  • Grossniklaus, Ueli; Paro, Renato (2014). Transcriptional silencing by polycomb-group proteins. Cold Spring Harbor Perspectives in Biology, 6(11):a019331.
  • Sakuraba, Yasuhito; Kim, Dami; Kim, Ye-Sol; Hörtensteiner, Stefan; Paek, Nam-Chon (2014). Arabidopsis STAYGREEN-LIKE (SGRL) promotes abiotic stress-induced leaf yellowing during vegetative growth. FEBS letters, 588(21):3830-3837.
  • Christ, Bastien; Egert, Aurélie; Süssenbacher, Iris; Kräutler, Bernhard; Bartels, Dorothea; Peters, Shaun; Hörtensteiner, Stefan (2014). Water deficit induces chlorophyll degradation via the 'PAO/phyllobilin' pathway in leaves of homoio- (Craterostigma pumilum) and poikilochlorophyllous (Xerophyta viscosa) resurrection plants. Plant, Cell & Environment, 37(11):2521-2531.
  • Kümmerli, Rolf; Ross-Gillespie, Adin (2014). Explaining the sociobiology of pyoverdin producingpseudomonas: a comment on ZHANG AND RAINEY (2013). Evolution, 68(11):3337-3343.
  • Amann, Ruth; Wyder, Stefan; Slavotinek, Anne M; Trueb, Beat (2014). The FgfrL1 receptor is required for development of slow muscle fibers. Developmental Biology, 394(2):228-241.
  • Zábrady, Matej; Hrdinová, Vendula; Müller, Bruno; Conrad, Udo; Hejátko, Jan; Janda, Lubomír (2014). Targeted in vivo inhibition of specific protein–protein interactions using recombinant antibodies. PLoS ONE, 9(10):e109875.
  • Müller, Lena Maria. The Role of Pollen Tube Reception in Reproductive Isolation. 2014, University of Zurich, Faculty of Science.
  • Stopnisek, Nejc. Ecology of the Genus Burkholderia in the Soil. 2014, University of Zurich, Faculty of Science.
  • Vaddepalli, P; Herrmann, A; Fulton, L; Oelschner, M; Hillmer, S; Stratil, T F; Fastner, A; Hammes, U Z; Ott, T; Robinson, D G; Schneitz, K (2014). The C2-domain protein QUIRKY and the receptor-like kinase STRUBBELIG localize to plasmodesmata and mediate tissue morphogenesis in Arabidopsis thaliana. Development, 141(21):4139-4148.
  • Segonzac, Cécile; Macho, Alberto P; Sanmartín, Maite; Ntoukakis, Vardis; Sánchez‐Serrano, José Juan; Zipfel, Cyril (2014). Negative control of BAK1 by protein phosphatase 2A during plant innate immunity. The EMBO Journal, 33(18):2069-2079.
  • Zhang, Jingbo; Martinoia, Enrico; De Angeli, Alexis (2014). Cytosolic nucleotides block and regulate the Arabidopsis vacuolar anion channel AtALMT9. Journal of Biological Chemistry, 289(37):25581-25589.
  • Grob, Stefan; Schmid, Marc W; Grossniklaus, Ueli (2014). Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila. Molecular Cell, 55(5):678-693.
  • Guyer, Luzia; Schelbert Hofstetter, Silvia; Christ, Bastien; Lira, Bruno Silvestre; Rossi, Magdalena; Hörtensteiner, Stefan (2014). Different mechanisms are responsible for chlorophyll dephytylation during fruit ripening and leaf senescence in tomato. Plant Physiology, 166(1):44-56.
  • Zhang, Wei; Liu, Tianqi; Ren, Guodong; Hörtensteiner, Stefan; Zhou, Yongming; Cahoon, Edgar B; Zhang, Chunyu (2014). Chlorophyll degradation: the tocopherol biosynthesis-related phytol hydrolase in Arabidopsis seeds is still missing. Plant Physiology, 166(1):70-79.
  • Sakuraba, Yasuhito; Park, So-Yon; Kim, Ye-Sol; Wang, Seung-Hyun; Yoo, Soo-Cheul; Hörtensteiner, Stefan; Paek, Nam-Chon (2014). Arabidopsis STAY-GREEN2 is a negative regulator of chlorophyll degradation during leaf senescence. Molecular Plant, 7(8):1288-302.
  • She, Wenjing; Baroux, Célia (2014). Chromatin dynamics during plant sexual reproduction. Frontiers in Plant Science:5:354.
  • Hurni, Severine; Brunner, Susanne; Stirnweis, Daniel; Herren, Gerhard; Peditto, David; McIntosh, Robert A; Keller, Beat (2014). The powdery mildew resistance gene Pm8 derived from rye is suppressed by its wheat ortholog Pm3. The Plant Journal, 79(6):904-913.
  • Pereira, A M; Masiero, S; Nobre, M S; Costa, M L; Solis, M-T; Testillano, P S; Sprunck, S; Coimbra, S (2014). Differential expression patterns of arabinogalactan proteins in Arabidopsis thaliana reproductive tissues. Journal of Experimental Botany, 65(18):5459-5471.
  • Honegger, R. Faszinierende Kopfweiden. In: Briefe aus dem Botanischen Garten Zürich, 1 July 2014, p.n/a.
  • Fazli, Mustafa; Almblad, Henrik; Rybtke, Morten Levin; Givskov, Michael; Eberl, Leo; Tolker-Nielsen, Tim (2014). Regulation of biofilm formation in Pseudomonasand Burkholderias pecies. Environmental Microbiology, 16(7):1961-1981.
  • Sakuraba, Yasuhito; Lee, Sang-Hwa; Kim, Ye-Sol; Park, Ohkmae K; Hörtensteiner, Stefan; Paek, Nam-Chon (2014). Delayed degradation of chlorophylls and photosynthetic proteins in Arabidopsis autophagy mutants during stress-induced leaf yellowing. Journal of Experimental Botany, 65(14):3915-3925.
  • Grob, Hanne. AtMRP5/AtABCC5 - An Inositolhexakisphosphate Transporter Interacts with Hookless 1, a Protein Involved in Ethylene Signaling. 2014, University of Zurich, Faculty of Science.
  • Dobay, Akos; Bagheri, Homayoun C; Messina, Antonio; Kümmerli, Rolf; Rankin, Daniel J (2014). Interaction effects of cell diffusion, cell density and public goods properties on the evolution of cooperation in digital microbes. Journal of Evolutionary Biology, 27(9):1869-1877.
  • She, Wenjing; Grimanelli, Daniel; Baroux, Célia (2014). An efficient method for quantitative, single-cell analysis of chromatin modification and nuclear architecture in whole-mount ovules in arabidopsis. Journal of Visualized Experiments, (88):1-9.
  • Eisenach, Cornelia; Baetz, Ulrike; Martinoia, Enrico (2014). Vacuolar proton pumping: more than the sum of its parts?. Trends in Plant Science, 19(6):344-346.
  • Stirnweis, Daniel. Molecular and Functional Analysis of Resistance Expansion and Suppression for Alleles of the Powdery Mildew Resistance Gene Pm3 in Wheat. 2014, University of Zurich, Faculty of Science.
  • Hurni, Severine. Molecular Analysis of the Orthologous Wheat and Rye Powdery Mildew Resistance Genes Pm3 and Pm8. 2014, University of Zurich, Faculty of Science.
  • Schläpfer, Joëlle. Two Petunia hybrida ABCG Type Transporters: Characterization of a Strigolactone Exporter and of a Transporter Involved in Allocation of Sterol-­‐Derived Compounds Important for Herbivore Defense. 2014, University of Zurich, Faculty of Science.
  • Schmidt, Anja; Schmid, Marc W; Klostermeier, Ulrich C; Qi, Weihong; Guthörl, Daniela; Sailer, Christian; Waller, Manuel; Rosenstiel, Philip; Grossniklaus, Ueli (2014). Apomictic and sexual germline development differ with respect to cell cycle, transcriptional, hormonal and epigenetic regulation. PLoS Genetics, 10(7):e1004476.
  • Ko, Donghwi; Kang, Joohyun; Kiba, Takatoshi; Park, Jiyoung; Kojima, Mikiko; Do, Jihye; Kim, Kyung Yoon; Kwon, Mi; Endler, Anne; Song, Won-Yong; Martinoia, Enrico; Sakakibara, Hitoshi; Lee, Youngsook (2014). Arabidopsis ABCG14 is essential for the root-to-shoot translocation of cytokinin. Proceedings of the National Academy of Sciences of the United States of America, 111(19):7150-7155.
  • Ngo, Quy A; Vogler, Hannes; Lituiev, Dmytro S; Nestorova, Anna; Grossniklaus, Ueli (2014). A calcium dialog mediated by the FERONIA Signal transduction pathway controls plant sperm delivery. Developmental Cell, 29(4):491-500.
  • Song, Won-Yong; Mendoza-Cózatl, David G; Lee, Youngsook; Schroeder, Julian I; Ahn, Sang-Nag; Lee, Hyun-Sook; Wicker, Thomas; Martinoia, Enrico (2014). Phytochelatin-metal(loid) transport into vacuoles shows different substrate preferences in barley and Arabidopsis. Plant, Cell & Environment, 37(5):1192-1201.
  • Grob, Stefan. On the Chromosomal Architecture of Arabidopsis thaliana. 2014, University of Zurich, Faculty of Science.
  • Shimizu, Kentaro K (2014). A Japanese PI in Switzerland. HFSP Matters, 4:8-9.
  • Macho, Alberto P; Zipfel, Cyril (2014). Plant PRRs and the Activation of Innate Immune Signaling. Molecular Cell, 54(2):263-272.
  • Soyk, S; Šimkova, K; Zurcher, E; Luginbuhl, L; Brand, L H; Vaughan, C K; Wanke, D; Zeeman, S C (2014). The enzyme-like domain of arabidopsis nuclear β-amylases is critical for DNA sequence recognition and transcriptional activation. Plant Cell, 26(4):1746-1763.
  • Dudnik, Alexey; Bigler, Laurent; Dudler, Robert (2014). Production of Proteasome Inhibitor Syringolin A by the Endophyte Rhizobium sp Strain AP16. Applied and Environmental Microbiology, 80(12):3741-3748.
  • Lituiev, Dmytro S; Grossniklaus, Ueli (2014). Patterning of the angiosperm female gametophyte through the prism of theoretical paradigms. Biochemical Society Transactions, 42(2):332-339.
  • Prince, David C; Drurey, Claire; Zipfel, Cyril; Hogenhout, Saskia A (2014). The Leucine-Rich Repeat Receptor-Like Kinase BRASSINOSTEROID INSENSITIVE1-ASSOCIATED KINASE1 and the Cytochrome P450 PHYTOALEXIN DEFICIENT3 Contribute to Innate Immunity to Aphids in Arabidopsis. Plant Physiology, 164(4):2207-2219.
  • Kadota, Yasuhiro; Sklenar, Jan; Derbyshire, Paul; Stransfeld, Lena; Asai, Shuta; Ntoukakis, Vardis; Jones, Jonathan DG; Shirasu, Ken; Menke, Frank; Jones, Alexandra; Zipfel, Cyril (2014). Direct Regulation of the NADPH Oxidase RBOHD by the PRR-Associated Kinase BIK1 during Plant Immunity. Molecular Cell, 54(1):43-55.
  • Simonini, Sara; Kater, Martin M (2014). Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. Journal of Experimental Botany, 65(6):1455-1465.
  • Carlier, A; Agnoli, K; Pessi, G; Suppiger, A; Jenul, C; Schmid, N; Tummler, B; Pinto-Carbó, Marta; Eberl, L (2014). Genome Sequence of Burkholderia cenocepacia H111, a Cystic Fibrosis Airway Isolate. Genome Announcements, 2(2):e00298-14.
  • Koch, M; Delmotte, N; Ahrens, C H; Omasits, U; Schneider, K; Danza, F; Padhi, B; Murset, V; Braissant, O; Vorholt, J A; Hennecke, H; Pessi, G (2014). A Link between Arabinose Utilization and Oxalotrophy in Bradyrhizobium japonicum. Applied and Environmental Microbiology, 80(7):2094-2101.
  • She, Wenjing. Chromatin Reprogramming During the Somatic-to-Reproductive Cell Fate Transition in Plants. 2014, University of Zurich, Faculty of Science.
  • Macho, Alberto P; Schwessinger, Benjamin; Ntoukakis, Vardis; Brutus, Alexandre; Segonzac, Cécile; Roy, Sonali; Kadota, Yasuhiro; Oh, Man-Ho; Sklenar, Jan; Derbyshire, Paul; Lozano-Durán, Rosa; Malinovsky, Frederikke Gro; Monaghan, Jacqueline; Menke, Frank L H; Huber, Steven C; He, Sheng Yang; Zipfel, Cyril (2014). A Bacterial Tyrosine Phosphatase Inhibits Plant Pattern Recognition Receptor Activation. Science, 343(6178):1509-1512.
  • Bashir, T; Sailer, C; Gerber, F; Loganathan, N; Bhoopalan, H; Eichenberger, C; Grossniklaus, U (2014). Hybridization alters spontaneous mutation rates in a parent-of-origin-dependent fashion in Arabidopsis. Plant Physiology, 165(1):424-437.
  • Pires, Nuno D (2014). Seed evolution: parental conflicts in a multi-generational household. BioMolecular Concepts, 5(1):71-86.
  • Nyati, Shyam; Scherrer, Sandra; Werth, Silke; Honegger, Rosmarie (2014). Green-algal photobiont diversity (Trebouxia spp.) in representatives of Teloschistaceae (Lecanoromycetes, lichen-forming ascomycetes). The Lichenologist, 46(02):189-212.
  • Trost, Gerda; Vi, Son Lang; Czesnick, Hjördis; Lange, Peggy; Holton, Nick; Giavalisco, Patrick; Zipfel, Cyril; Kappel, Christian; Lenhard, Michael (2014). Arabidopsis poly(A) polymerase PAPS1 limits founder-cell recruitment to organ primordia and suppresses the salicylic acid-independent immune response downstream of EDS1/PAD4. The Plant Journal, 77(5):688-699.
  • Lloyd, Simon R; Schoonbeek, Henk-jan; Trick, Martin; Zipfel, Cyril; Ridout, Christopher J (2014). Methods to Study PAMP-Triggered Immunity in Brassica Species. Molecular Plant-Microbe Interactions, 27(3):286-295.
  • Trdá, Lucie; Fernandez, Olivier; Boutrot, Freddy; Héloir, Marie‐Claire; Kelloniemi, Jani; Daire, Xavier; Adrian, Marielle; Clément, Christophe; Zipfel, Cyril; Dorey, Stéphan; Poinssot, Benoit (2014). The grapevine flagellin receptor VvFLS2 differentially recognizes flagellin-derived epitopes from the endophytic growth-promoting bacterium Burkholderia phytofirmans and plant pathogenic bacteria. New Phytologist, 201(4):1371-1384.
  • Malinovsky, Frederikke Gro; Batoux, Martine; Schwessinger, Benjamin; Youn, Ji Hyun; Stransfeld, Lena; Win, Joe; Kim, Seong-Ki; Zipfel, Cyril (2014). Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression2 interacting with increased leaf inclination1 binding bHLH1. Plant Physiology, 164(3):1443-1455.
  • Dudnik, Alexey. Functional Analysis of Syrbactin Synthetase-Like Gene Clusters in Photorhabdus luminescens and Rhizobium sp. and the Role of Syrbactins in Pseudomonas syringae Strains Colonizing Grass Species. 2014, University of Zurich, Faculty of Science.
  • Baetz, Ulrike; Martinoia, Enrico (2014). Root exudates: the hidden part of plant defense. Trends in Plant Science, 19(2):90-98.
  • Guo, Woei-Jiun; Nagy, Reka; Chen, Hsin-Yi; Pfrunder, Stefanie; Yu, Ya-Chi; Santelia, Diana; Frommer, Wolf B; Martinoia, Enrico (2014). SWEET17, a facilitative transporter, mediates fructose transport across the tonoplast of Arabidopsis roots and leaves. Plant Physiology, 164(2):777-789.
  • Süssenbacher, Iris; Christ, Bastien; Hörtensteiner, Stefan; Kräutler, Bernhard (2014). Hydroxymethylated phyllobilins: a puzzling new feature of the dioxobilin branch of chlorophyll breakdown. Chemistry - A European Journal, 20(1):87-92.
  • Jacquat, Christiane; Roger, I (2014). Fleurs des pharaons. Couleurs et parfums de milliers d’années. Archéologia:22-33.
  • Honegger, R. Kiwi und andere Strahlengriffelgewächse. In: Briefe aus dem Botanischen Garten Zürich, 1 January 2014.
  • Kost, Thomas; Stopnisek, Nejc; Agnoli, Kirsty; Eberl, Leo; Weisskopf, Laure (2014). Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root colonization of lupin and maize by Burkholderia phytofirmans. Frontiers in Microbiology:4:421.
  • Schmid, Nadine. Cell-to-Cell Signaling in Burkholderia cenocepacia H111: An Entangled Web of Chemical Languages. 2014, University of Zurich, Faculty of Science.
  • Zhang, Jingbo. Functional and Structural Characterization of the Vacuolar Anion Channels AtALMT9 and AtALMT4 in Arabidopsis thaliana. 2014, University of Zurich, Faculty of Science.
  • Kritsas, K. Identification and Characterization of a New Class of Highly Conserved Non-Coding Sequences in Plants. 2014, University of Zurich, Faculty of Science.
  • Shimizu, Kentaro K (2014). Network merging analysis of duplicate genome function in recently hybridized species. In: Awardees of Human Frontier Science Program. Tokyo: s.n., 26-27.
  • Salcher, Michaela M (2014). Same same but different: ecological niche partitioning of planktonic freshwater prokaryotes. Journal of Limnology, 73(1s):74-87.
  • Neuenschwander, Stefan M; Pernthaler, Jakob; Posch, Thomas; Salcher, Michaela M (2014). Seasonal growth potential of rare lake water bacteria suggest their disproportional contribution to carbon fluxes. Environmental Microbiology, 17(3):781-795.
  • Felekis, D; Vogler, H; Grossniklaus, U; Nelson, Bradley J (2014). In Emerging Tools for Micro and Nano Manipulation. In: Felekis, D; Vogler, H; Grossniklaus, Grossniklaus; Nelson, Bradley J. Microrobotic tools for plant biology. s.n.: Wiley-VCH, n/a.
  • Diaz-de-Quijano, Daniel; Palacios, Pilar; Horňák, Karel; Felip, Marisol (2014). 3D restoration microscopy improves quantification of enzyme-labeled fluorescence-based single-cell phosphatase activity in plankton. Cytometry. Part A, 85(10):841-853.
  • David-Elbiali, Mireille; Falquet, Christian; Nitu, Claudia; Studer, Jacqueline; Glauser, David; Jacquat, Christiane; Katona Serneels, Ildiko; Serneels, Vincent (2014). Fosses rituelles de l’âge du Bronze au pied du Jura: pratiques sacrificielles à Onnens / Corcelles-près-Concise – les Côtes (canton de Vaud, Suisse) et contribution à la définition de la phase BzD1 en Suisse occidentale. Cahiers d'archéologie romande (CAR), 147:243-260.
  • Wiese, A; Jacquat, C (2014). Blumenreich. Wiedergeburt in Pharaonengräbern. Basel, Antikenmuseum Basel und Sammlung Ludwig. Basel: Antikenmuseum Basel und Sammlung Ludwig.
  • Zupo, Valerio; Jüttner, Friedrich; Maibam, Chingoileima; Butera, Emanuela; Blom, Judith (2014). Apoptogenic Metabolites in Fractions of the Benthic Diatom Cocconeis scutellum parva. Marine Drugs, 12(1):547-567.
  • Callieri, Cristiana; Coci, Manuela; Eckert, Ester M; Salcher, Michaela M; Bertoni, Roberto (2014). Archaea and Bacteria in deep lake hypolimnion: In situ dark inorganic carbon uptake. Journal of Limnology, 73(1):31-38.
  • Portmann, Cyril; Sieber, Simon; Wirthensohn, Silvan; Blom, Judith F; Da Silva, Laeticia; Baudat, Emilie; Kaiser, Marcel; Brun, Reto; Gademann, Karl (2014). Balgacyclamides, Antiplasmodial Heterocyclic Peptides fromMicrocystis aeruguinosaEAWAG 251. Journal of natural products, 77(3):557-562.
  • Cachi, A M; Hedhly, A; Hormaza, J I; Wünsch, A (2014). Pollen tube growth in the self-compatible sweet cherry genotype, ‘Cristobalina’, is slowed down after self-pollination. Annals of Applied Biology, 164(1):73-84.
  • Dirren, Sebastian; Salcher, Michaela M; Blom, J F; Schweikert, M; Posch, T (2014). Ménage-à-trois: The amoeba Nuclearia sp. from Lake Zurich with its ecto- and endosymbiotic bacteria. Protist, 165(5):745-758.
  • Horigome, Chihiro; Oma, Yukako; Konishi, Tatsunori; Schmid, Roger; Marcomini, Isabella; Hauer, Michael H; Dion, Vincent; Harata, Masahiko; Gasser, Susan M (2014). SWR1 and INO80 chromatin remodelers contribute to DNA double-strand break perinuclear anchorage site choice. Molecular Cell, 55(4):626-639.
  • Kohler, Esther; Villiger, Jörg; Posch, Thomas; Derlon, Nicolas; Shabarova, Tanja; Morgenroth, Eberhard; Pernthaler, Jakob; Blom, Judith F (2014). Biodegradation of microcystins during gravity-driven membrane (GDM) ultrafiltration. PLoS ONE, 9(11):e111794.
  • Horňák, Karel; Pernthaler, Jakob (2014). A novel ion-exclusion chromatography–mass spectrometry method to measure concentrations and cycling rates of carbohydrates and amino sugars in freshwaters. Journal of Chromatography. A, 1365:115-123.
  • Kohler, Esther; Grundler, Verena; Häussinger, Daniel; Kurmayer, Rainer; Gademann, Karl; Pernthaler, Jakob; Blom, Judith F (2014). The toxicity and enzyme activity of a chlorine and sulfate containing aeruginosin isolated from a non-microcystin-producing Planktothrix strain. Harmful Algae, 39:154-160.
  • Eckert, Ester M; Pernthaler, Jakob (2014). Bacterial epibionts of Daphnia: A potential route for the transfer of dissolved organic carbon in freshwater food webs. The ISME journal, 8(9):1808-1819.
  • Alonso-Sáez, Laura; Zeder, Michael; Harding, Tommy; Pernthaler, Jakob; Lovejoy, Connie; Bertilsson, Stefan; Pedrós-Alió, Carlos (2014). Winter bloom of a rare betaproteobacterium in the Arctic Ocean. Frontiers in Microbiology:5:425.
  • Shabarova, Tanja; Villiger, Jörg; Morenkov, Oleg; Niggemann, Jutta; Dittmar, Thorsten; Pernthaler, Jakob (2014). Bacterial community structure and dissolved organic matter in repeatedly flooded subsurface karst water pools. FEMS Microbiology Ecology, 89(1):111-126.
  • Faltermann, Susanne; Zucchi, Sara; Kohler, Esther; Blom, Judith F; Pernthaler, Jakob; Fent, Karl (2014). Molecular effects of the cyanobacterial toxin cyanopeptolin (CP1020) occurring in algal blooms: Global transcriptome analysis in zebrafish embryos. Aquatic Toxicology, 149:33-39.
  • Song, Won-Yong; Park, Jiyoung; Eisenach, Cornelia; Maeshima, Masayoshi; Lee, Youngsook; Martinoia, Enrico (2014). ABC Transporters and Heavy Metals. In: Geisler, Markus. Plant ABC Transporters. Cham, Switzerland: Springer International Publishing Switzerland, 1-17.
  • Miettinen, Karel; Dong, Lemeng; Navrot, Nicolas; Schneider, Thomas; Burlat, Vincent; Pollier, Jacob; Woittiez, Lotte; van der Krol, Sander; Lugan, Raphaël; Ilc, Tina; Verpoorte, Robert; Oksman-Caldentey, Kirsi-Marja; Martinoia, Enrico; Bouwmeester, Harro; Goossens, Alain; Memelink, Johan; Werck-Reichhart, Danièle (2014). The seco-iridoid pathway from Catharanthus roseus. Nature Communications, 5:3606.
  • Wege, Stefanie; De Angeli, Alexis; Droillard, Marie-Jo; Kroniewicz, Laetitia; Merlot, Sylvain; Cornu, David; Gambale, Franco; Martinoia, Enrico; Barbier-Brygoo, Hélène; Thomine, Sébastien; Leonhardt, Nathalie; Filleur, Sophie (2014). Phosphorylation of the vacuolar anion exchanger AtCLCa is required for the stomatal response to abscisic acid. Science Signaling, 7(333):ra65.
  • Pires, Nuno D; Grossniklaus, Ueli (2014). Different yet similar: evolution of imprinting in flowering plants and mammals. F1000 Prime Reports, 6:63.
  • Selter, L L; Shatalina, Margarita; Singla, Jyoti; Keller, B (2014). Identification and implementation of resistance: genomics-assisted use of genetic resources for breeding against powdery mildew and Stagonospora nodorum blotch in wheat. In: Tuberosa, Roberto; Graner, Andreas; Frison, Emile. Genomics of Plant Genetic Resources. Cham: Springer, 359-383.
  • John, Florian; Philipp, Matthias; Leiber, Ruth-Maria; Errafi, Sanae; Ringli, Christoph (2014). Ubiquitin-related modifiers of arabidopsis thaliana influence root development. PLoS ONE, 9(1):e86862.
  • Philipp, Matthias; John, Florian; Ringli, Christoph (2014). The cytosolic thiouridylase CTU2 of Arabidopsis thaliana is essential for posttranscriptional thiolation of tRNAs and influences root development. BMC Plant Biology, 14:109.
  • Wang, Muhua; Yu, Yeisoo; Haberer, Georg; Marri, Pradeep Reddy; Fan, Chuanzhu; Goicoechea, Jose Luis; Zuccolo, Andrea; Song, Xiang; Kudrna, Dave; Ammiraju, Jetty S S; Cossu, Rosa Maria; Maldonado, Carlos; Chen, Jinfeng; Lee, Seunghee; Sisneros, Nick; de Baynast, Kristi; Golser, Wolfgang; Wissotski, Marina; Kim, Woojin; Sanchez, Paul; Ndjiondjop, Marie-Noelle; Sanni, Kayode; Long, Manyuan; Carney, Judith; Panaud, Olivier; Wicker, Thomas; Machado, Carlos A; Chen, Mingsheng; Mayer, Klaus F X; Rounsley, Steve; Wing, Rod A (2014). The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics, 46(9):982-988.
  • Buchmann, Jan P; Löytynoja, Ari; Wicker, Thomas; Schulman, Alan H (2014). Analysis of CACTA transposases reveals intron loss as major factor influencing their exon/intron structure in monocotyledonous and eudicotyledonous hosts. Mobile DNA, 5:24.
  • Aguilar, Claudio; Schmid, Nadine; Lardi, Martina; Pessi, Gabriella; Eberl, Leo (2014). The IclR-family regulator BapR controls biofilm formation in B. cenocepacia H111. PLoS ONE, 9(3):e92920.
  • Ross-Gillespie, Adin; Kümmerli, Rolf (2014). Collective decision-making in microbes. Frontiers in Microbiology:5:54.
  • Ross-Gillespie, Adin; Weigert, M; Brown, S P; Kümmerli, Rolf (2014). Gallium-mediated siderophore quenching as an evolutionarily robust antibacterial treatment. Evolution, Medicine, and Public Health, 2014(1):18-29.
  • Ross-Gillespie, Adin; Kümmerli, Rolf (2014). 'Evolution-Proofing' antibacterials. Evolution, Medicine, and Public Health, 2014(1):134-135.
  • Christ, Bastien; Hörtensteiner, Stefan (2014). Mechanism and significance of chlorophyll breakdown. Journal of Plant Growth Regulation, 33(1):4-20.
  • Sedeek, Khalid E M; Scopece, Giovanni; Staedler, Yannick M; Schönenberger, Jürg; Cozzolino, Salvatore; Schiestl, Florian P; Schlüter, Philipp M (2014). Genic rather than genome-wide differences between sexually deceptive Ophrys orchids with different pollinators. Molecular Ecology, 23(24):6192-6205.
  • Bansal, Urmil; Bariana, Harbans; Wong, Debbie; Randhawa, Mandeep; Wicker, Thomas; Hayden, Matthew; Keller, Beat (2014). Molecular mapping of an adult plant stem rust resistance gene Sr56 in winter wheat cultivar Arina. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 127(6):1441-1448.
  • International Wheat Genome Sequencing Consortium (IWGSC); Mayer, K F X; Rogers, J; Dole el, J; et al; Wincker, P; Keller, B; Praud, S (2014). A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science, 345(6194):1251788.
  • Sela, Hanan; Spiridon, Laurentiu N; Ashkenazi, Haim; Bhullar, Navreet K; Brunner, Susanne; Petrescu, Andrei-Jose; Fahima, Tzion; Keller, Beat; Jordan, Tina (2014). Three-dimensional modeling and diversity analysis reveals distinct AVR recognition sites and evolutionary pathways in wild and domesticated wheat Pm3 R genes. Molecular Plant-Microbe Interactions, 27(8):835-845.
  • Shatalina, Margarita; Messmer, Monika; Feuillet, Catherine; Mascher, Fabio; Paux, Etienne; Choulet, Frédéric; Wicker, Thomas; Keller, Beat (2014). High-resolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch in wheat reveals presence of two distinct resistance loci in the target interval. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 127(3):573-586.
  • Middleton, Christopher P; Senerchia, Natacha; Stein, Nils; Akhunov, Eduard D; Keller, Beat; Wicker, Thomas; Kilian, Benjamin (2014). Sequencing of Chloroplast Genomes from Wheat, Barley, Rye and Their Relatives Provides a Detailed Insight into the Evolution of the Triticeae Tribe. PLoS ONE, 9(3):e85761.
  • Miyazaki, Yuko; Maruyama, Yosuke; Chiba, Yukako; Kobayashi, Masaki J; Joseph, Benesh; Shimizu, Kentaro K; Mochida, Keiichi; Hiura, Tsutom; Kon, Hirokazu; Satake, Akiko (2014). Nitrogen as a key regulator of flowering in Fagus crenata: understanding the physiological mechanism of masting by gene expression analysis. Ecology Letters, 17(10):1299-1309.
  • Lindner, Heike. Pollen tube reception in the synergid cells of Arabidopsis thaliana – Novel players and old acquaintances. 2014, University of Zurich, Faculty of Science.
  • Sailer, Christian; Schmid, Bernhard; Stöcklin, Jürg; Grossniklaus, Ueli (2014). Sexual Hieracium pilosella plants are better inter-specific, while apomictic plants are better intra-specific competitors. Perspectives in Plant Ecology, Evolution and Systematics, 16(2):43-51.
  • Dudnik, Alexey; Dudler, Robert (2014). Genome and Transcriptome Sequences of Pseudomonas syringae pv. syringae B301D-R. Genome Announcements, 2(2):e00306-e00314.
  • Stirnweis, Daniel; Milani, Samira Désiré; Jordan, Tina; Keller, Beat; Brunner, Susanne (2014). Substitutions of two amino acids in the nucleotide-binding site domain of a resistance protein enhance the hypersensitive response and enlarge the PM3F resistance spectrum in wheat. Molecular Plant-Microbe Interactions, 27(3):265-276.
  • Stirnweis, Daniel; Milani, Samira Désiré; Brunner, Susanne; Herren, Gerhard; Buchmann, Gabriele; Peditto, David; Jordan, Tina; Keller, Beat (2014). Suppression among alleles encoding NB-LRR resistance proteins interferes with resistance in F1 hybrid and allele-pyramided wheat plants. The Plant Journal, 79(6):893-903.
  • Zozomová-Lihova, Judita; Krak, Karol; Mandakova, Terezie; Shimizu, Kentaro K; Spaniel, Staniskav; Vit, Petr; Lysak, Martin A (2014). Multiple hybridization events in Cardamine (Brassicaceae) during the last 150 years: revisiting a textbook example of neoallopolyploidy. Annals of Botany, 113(5):817-830.
  • Honegger, R. Kiwi und andere Strahlengriffelgewächse. In: Briefe aus dem Botanischen Garten Zürich, 48/1, 2014, 1-2.
  • Kropivšek, Klara; Pickford, Jasmine; Carter, David A (2014). Postnatal Dynamics of Zeb2 Expression in Rat Brain: Analysis of Novel 3' UTR Sequence Reveals a miR-9 Interacting Site. Journal of Molecular Neuroscience, 52(1):138-147.
  • Wuest, Samuel E; Grossniklaus, Ueli (2014). Laser-assisted microdissection applied to floral tissues. In: Riechmann, José Luis; Wellmer, Frank. Methods in Molecular Biology: Flower Development. New York, Heidelberg, Dordrecht, London: Springer, 329-344.
  • Gossmann, Toni I; Schmid, Marc W; Grossniklaus, Ueli; Schmid, Karl J (2014). Selection-driven evolution of sex-biased genes is consistent with sexual selection in arabidopsis thaliana. Molecular Biology and Evolution, 31(3):574-583.
  • Agnoli, K; Frauenknecht, C; Freitag, R; Schwager, S; Jenul, C; Vergunst, A; Carlier, A; Eberl, L (2014). The third replicon of members of the Burkholderia cepacia complex, plasmid pC3, plays a role in stress tolerance. Applied and Environmental Microbiology, 80(4):1340-1348.
  • Mathew, Anugraha; Eberl, Leo; Carlier, Aurelien L (2014). A novel siderophore-independent strategy of iron uptake in the genus Burkholderia. Molecular Microbiology, 91(4):805-820.
  • Stopnisek, Nejc; Bodenhausen, Natacha; Frey, Beat; Fierer, Noah; Eberl, Leo; Weisskopf, Laure (2014). Genus-wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations. Environmental Microbiology, 16(6):1503-1512.
  • Akama, Satoru; Shimizu-Inatsugi, Rie; Shimizu, Kentaro K; Sese, Jun (2014). Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis. Nucleic Acids Research, 42(6):e46.
  • Dudler, Robert (2014). The role of bacterial phytotoxins in inhibiting the eukaryotic proteasome. Trends in Microbiology, 22(1):28-35.

• 2013

  • Lozano-Durán, Rosa; Macho, Alberto P; Boutrot, Freddy; Segonzac, Cécile; Somssich, Imre E; Zipfel, Cyril (2013). The transcriptional regulator BZR1 mediates trade-off between plant innate immunity and growth. eLife, 2:e00983.
  • Galbiati, Francesca; Sinha Roy, Dola; Simonini, Sara; Cucinotta, Mara; Ceccato, Luca; Cuesta, Candela; Simaskova, Maria; Benkova, Eva; Kamiuchi, Yuri; Aida, Mitsuhiro; Weijers, Dolf; Simon, Rüdiger; Masiero, Simona; Colombo, Lucia (2013). An integrative model of the control of ovule primordia formation. The Plant Journal, 76(3):446-455.
  • Sun, Yadong; Li, Lei; Macho, Alberto P; Han, Zhifu; Hu, Zehan; Zipfel, Cyril; Zhou, Jian-Min; Chai, Jijie (2013). Structural Basis for flg22-Induced Activation of the Arabidopsis FLS2-BAK1 Immune Complex. Science, 342(6158):624-628.
  • Zhang, Weiguo; Fraiture, Malou; Kolb, Dagmar; Löffelhardt, Birgit; Desaki, Yoshitake; Boutrot, Freddy F G; Tör, Mahmut; Zipfel, Cyril; Gust, Andrea A; Brunner, Frédéric (2013). Arabidopsis receptor-like protein30 and receptor-like kinase suppressor of BIR1-1/EVERSHED mediate innate immunity to necrotrophic fungi. Plant Cell, 25(10):4227-4241.
  • Gregis, Veronica; Andrés, Fernando; Sessa, Alice; Guerra, Rosalinda F; Simonini, Sara; Mateos, Julieta L; Torti, Stefano; Zambelli, Federico; Prazzoli, Gian Marco; Bjerkan, Katrine N; Grini, Paul E; Pavesi, Giulio; Colombo, Lucia; Coupland, George; Kater, Martin M (2013). Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis. Genome Biology, 14(6):R56.
  • Asai, Shuta; Ichikawa, Tatsushi; Nomura, Hironari; Kobayashi, Michie; Kamiyoshihara, Yusuke; Mori, Hitoshi; Kadota, Yasuhiro; Zipfel, Cyril; Jones, Jonathan D G; Yoshioka, Hirofumi (2013). The Variable Domain of a Plant Calcium-dependent Protein Kinase (CDPK) Confers Subcellular Localization and Substrate Recognition for NADPH Oxidase. Journal of Biological Chemistry, 288(20):14332-14340.
  • Farid, Akhlaq; Gro Malinovsky, Frederikke; Veit, Christiane; Schoberer, Jennifer; Zipfel, Cyril; Strasser, Richard (2013). Specialized Roles of the Conserved Subunit OST3/6 of the Oligosaccharyltransferase Complex in Innate Immunity and Tolerance to Abiotic Stresses. Plant Physiology, 162(1):24-38.
  • Zipfel, Cyril (2013). Combined roles of ethylene and endogenous peptides in regulating plant immunity and growth. Proceedings of the National Academy of Sciences of the United States of America, 110(15):5748-5749.
  • Jia, Jizeng; Zhao, Shancen; et al (2013). Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature, 496(7443):91-95.
  • Ogura, Atsushi; Yoshida, Masa-aki; Moritaki, Takeya; Sese, Jun; Shimizu, Kentaro K; Sousounis, Konstantinos; Tsonis, Panagiotis A (2013). Loss of the six3/6 controlling pathways might have resulted in pinhole-eye evolution in Nautilus. Scientific Reports, 3:1432.
  • Nicaise, Valerie; Joe, Anna; Jeong, Byeong-ryool; Korneli, Christin; Boutrot, Freddy; Westedt, Isa; Staiger, Dorothee; Alfano, James R; Zipfel, Cyril (2013). Pseudomonas HopU1 modulates plant immune receptor levels by blocking the interaction of their mRNAs with GRP7. The EMBO Journal, 32(5):701-712.
  • Khurana, Neetika; Chauhan, Harsh; Khurana, Paramjit (2013). Wheat chloroplast targeted shsp26 promoter confers heat and abiotic stress inducible expression in transgenic arabidopsis plants. PLoS ONE, 8(1):e54418.
  • Middleton, Christopher P; Stein, Nils; Keller, Beat; Kilian, Benjamin; Wicker, Thomas (2013). Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity. The Plant Journal, 73(2):347-356.
  • Meekins, David A; Guo, Hou-Fu; Husodo, Satrio; Paasch, Bradley C; Bridges, Travis M; Santelia, Diana; Kötting, Oliver; Vander Kooi, Craig W; Gentry, Matthew S (2013). Structure of the Arabidopsis glucan phosphatase like sex four2 reveals a unique mechanism for starch dephosphorylation. Plant Cell, 25(6):2302-2314.
  • Seung, David; Thalmann, Matthias; Sparla, Francesca; Abou Hachem, Maher; Lee, Sang Kyu; Issakidis-Bourguet, Emmanuelle; Svensson, Birte; Zeeman, Samuel C; Santelia, Diana (2013). Arabidopsis thaliana AMY3 is a unique redox-regulated chloroplastic α-amylase. Journal of Biological Chemistry, 288(47):33620-33633.
  • Pomati, Francesco; Kraft, Nathan J B; Posch, Thomas; Eugster, Bettina; Jokela, Jukka; Ibelings, Bas W (2013). Individual cell based traits obtained by scanning flow-cytometry show selection by biotic and abiotic environmental factors during a phytoplankton spring bloom. PLoS ONE, 8(8):e71677.
  • Piwosz, K; Salcher, M M; Zeder, M; Ameryk, A; Pernthaler, J (2013). Seasonal dynamics and activity of typical freshwater bacteria in brackish waters of the Gulf of Gdańsk. Limnology and Oceanography, 58(3):817-826.
  • Pernthaler, Jakob (2013). Freshwater microbial communities. In: Rosenberg, Eugene; DeLong, Edward; Lory, Stefan. The Prokaryotes. Berlin Heidelberg: Springer, 97-112.
  • Corno, Gianluca; Villiger, Jörg; Pernthaler, Jakob (2013). Coaggregation in a microbial predator–prey system affects competition and trophic transfer efficiency. Ecology, 94(4):870-881.
  • Shabarova, Tanja; Widmer, Franco; Pernthaler, Jakob (2013). Mass effects meet species sorting: transformations of microbial assemblages in epiphreatic subsurface karst water pools. Environmental Microbiology, 15(9):2476-2488.
  • Salcher, Michaela M; Posch, Thomas; Pernthaler, Jakob (2013). In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake. The ISME journal, 7(5):896-907.
  • Piccini, Claudia; Conde, Daniel; Pernthaler, Jakob; Sommaruga, Ruben (2013). Photoalteration of macrophyte-derived chromophoric dissolved organic matter induces growth of single bacterial populations in a coastal lagoon. Journal of Limnology, 72(3):582-591.
  • Garneau, Marie-Ève; Posch, Thomas; Hitz, Gregory; Pomerleau, François; Pradalier, Cédric; Siegwart, Roland; Pernthaler, Jakob (2013). Short-term displacement of Planktothrix rubescens (cyanobacteria) in a pre-alpine lake observed using an autonomous sampling platform. Limnology and Oceanography, 58(5):1892-1906.
  • Eiler, Alexander; Drakare, Stina; Bertilsson, Stefan; Pernthaler, Jakob; Peura, Sari; Rofner, Carina; Simek, Karel; Yang, Yang; Znachor, Petr; Lindström, Eva S (2013). Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach. PLoS ONE, 8(1):e53516.
  • Eckert, Ester M; Baumgartner, Michael; Huber, Iris M; Pernthaler, Jakob (2013). Grazing resistant freshwater bacteria profit from chitin and cell-wall-derived organic carbon. Environmental Microbiology, 15(7):2019-2030.
  • Derlon, Nicolas; Koch, Nicolas; Eugster, Bettina; Posch, Thomas; Pernthaler, Jakob; Pronk, Wouter; Morgenroth, Eberhard (2013). Activity of metazoa governs biofilm structure formation and enhances permeate flux during Gravity-Driven Membrane (GDM) filtration. Water research, 47(6):2085-2095.
  • Alonso, Cecilia; Piccini, Claudia; Unrein, Fernando; Bertoglio, Florencia; Conde, Daniel; Pernthaler, Jakob (2013). Environmental dynamics as a structuring factor for microbial carbon utilization in a subtropical coastal lagoon. Frontiers in Microbiology:4:14.
  • Sokoli, A. A study of mycoplasma suis pathomechanisms leading to immune modulation and hemorrhagic diathesis. 2013, University of Zurich, Faculty of Science.
  • Ocampo, Paolo Santiago S. Bacterial responses during antibiotic treatment. 2013, University of Zurich, Faculty of Science.
  • Honegger, R. Elias Landolt (24. Juli 1926 - 1. April 2013) Prof. Dr. sc. nat. ETH. In: Vierteljahresschrift der Naturforschenden Gesellschaft in Zürich, 158, 2013, p.105-106.
  • Honegger, R. In Memoriam Elias Landolt (Beiblatt zu den Briefen aus dem Botanischen Garten). In: Gartenbriefe. Briefe aus dem Botanischen Garten Zürich, 47/3, 2013, p.S1-S2.
  • Honegger, R. Ananas: Königin der Früchte. In: Gartenbriefe. Briefe aus dem Botanischen Garten Zürich, 47/1, 2013, p.1-2.
  • Zürcher, Evelyne; Tavor-Deslex, Deborah; Lituiev, Dmytro; Enkerli, Katalin; Tarr, Paul T; Müller, Bruno (2013). A robust and sensitive synthetic sensor to monitor the transcriptional output of the cytokinin signaling network in planta. Plant Physiology, 161(3):1066-1075.
  • Nyati, Shyam; Werth, Silke; Honegger, Rosmarie (2013). Genetic diversity of sterile cultured Trebouxia photobionts associated with the lichen-forming fungus Xanthoria parietina visualized with RAPD-PCR fingerprinting techniques. The Lichenologist, 45(06):825-840.
  • Nyati, Shyam; Bhattacharya, Debashish; Werth, Silke; Honegger, Rosmarie (2013). Phylogenetic analysis of LSU and SSU rDNA group I introns of lichen photobionts associated with the genera Xanthoria and Xanthomendoza (Teloschistaceae, lichenized Ascomycetes). Journal of Phycology, 49(6):1154-1166.
  • Edwards, Dianne; Axe, Lindsey; Honegger, Rosmarie (2013). Contributions to the diversity in cryptogamic covers in the mid-Palaeozoic: Nematothallus revisited. Botanical Journal of the Linnean Society, 173(4):505-534.
  • Honegger, Rosmarie; Axe, Lindsey; Edwards, Dianne (2013). Bacterial epibionts and endolichenic actinobacteria and fungi in the Lower Devonian lichen Chlorolichenomycites salopensis. Fungal Biology, 117(7-8):512-518.
  • Ammann, T. Advancement and structural analysis of a subgingival biofilm model system. 2013, University of Zurich, Faculty of Science.
  • Raissig, Michael T. Genomic imprinting in Arabidopsis thaliana – how is it regulated and where does it occur?. 2013, University of Zurich, Faculty of Science.
  • Middleton, Christopher. Genome composition and transposable element dynamics in triticeae, the use of chloroplast sequences to data divergence times and transcriptome analysis of transposable element expression. 2013, University of Zurich, Faculty of Science.
  • Shatalina, Margarita. Highresolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch on chromosome 3B of Bread Wheat (Triticum aestivum L). 2013, University of Zurich, Faculty of Science.
  • Selter, Liselotte Laurence. Functional validation of the durable disease resistance gene Lr34 in wheat and heterologous grass species. 2013, University of Zurich, Faculty of Science.
  • Sailer, Christian. The Relationship Between the Success of Invasive Plants and their Mode of Reproduction. 2013, University of Zurich, Faculty of Science.
  • Oberhänsli, Simone. A reference sequence for Blumeria graminis f. sp. tritici (wheat powdery mildew) and its application for comparative and evolutionary genomics. 2013, University of Zurich, Faculty of Science.
  • Mayank, Pururawa. Exploring the role of phosphorylation in Arabidopsis thaliana pollination-specific tissue by applying phosphoproteomics. 2013, University of Zurich, Faculty of Science.
  • Lituiev, D S. A theoretical and experimental study of cell specification in the female gametophyte. 2013, University of Zurich, Faculty of Science.
  • Kamber, Tim. Characterization of Erwinia amylovora - host plant and - biocontrol agent interactions. 2013, University of Zurich, Faculty of Science.
  • Christ, Bastien. Chlorophyll breakdown: modifications of colorless chlorophyll catabolites. 2013, University of Zurich, Faculty of Science.
  • Shabarova, Tatiana. Life in subsurface pools: Insight into microbial diversity and dynamics in the endokarst environment. 2013, University of Zurich, Faculty of Science.
  • Quiblier, Chantal Irene. RND proteins in Staphylococcus aureus: their function and impact on fitness, resistance and virulence. 2013, University of Zurich, Faculty of Science.
  • Eckert, Ester. Organic carbon uptake by bacteria with different live strategies – Successions and unexplored food web interactions. 2013, University of Zurich, Faculty of Science.
  • Nodzynski, Tomasz; Feraru, Mugurel I; Hirsch, Sibylle; De Rycke, Riet; Niculaes, Claudiu; Boerjan, Wout; Van Leene, Jelle; De Jaeger, Geert; Vanneste, Steffen; Friml, Jirí (2013). Retromer subunits VPS35A and VPS29 mediate prevacuolar compartment (PVC) function in Arabidopsis. Molecular Plant, 6(6):1849-1862.
  • Pires, Nuno D; Yi, Keke; Breuninger, Holger; Catarino, Bruno; Menand, Benoît; Dolan, Liam (2013). Recruitment and remodeling of an ancient gene regulatory network during land plant evolution. Proceedings of the National Academy of Sciences of the United States of America, 110(23):9571-9576.
  • Hayles, Jacqueline; Wood, Valerie; Jeffery, Linda; Hoe, Kwang-Lae; Kim, Dong-Uk; Park, Han-Oh; Salas-Pino, Silvia; Heichinger, Christian; Nurse, Paul (2013). A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biology, 3(5):130053.
  • Dengler, Vanina. Factors affecting antibiotic resistance of staphylococcus aureus. 2013, University of Zurich, Faculty of Science.
  • Spaniol, Violeta; Wyder, Stefan; Aebi, Christoph (2013). RNA-Seq-based analysis of the physiologic cold shock-induced changes in Moraxella catarrhalis gene expression. PLoS ONE, 8(7):e68298.
  • Kong, Yingying; Zhu, Yubin; Gao, Chen; She, Wenjing; Lin, Weiqiang; Chen, Yong; Han, Ning; Bian, Hongwu; Zhu, Muyuan; Wang, Junhui (2013). Tissue-specific expression of SMALL AUXIN UP RNA41 differentially regulates cell expansion and root meristem patterning in Arabidopsis. Plant & Cell Physiology, 54(4):609-621.
  • She, Wenjing; Grimanelli, Daniel; Rutowicz, Kinga; Whitehead, Marek W J; Puzio, Marcin; Kotlinski, Maciej; Jerzmanowski, Andrzej; Baroux, Célia (2013). Chromatin reprogramming during the somatic-to-reproductive cell fate transition in plants. Development, 140(19):4008-4019.
  • Braun, R; Grossniklaus, U; Gygax, D; Kohler, S; Matthias, P; Romeis, J; Sanvido, O; Stieger, P (2013). Gentechnisch veränderte Nutzpflanzen und ihre Bedeutung für eine nachhaltige Landwirtschaft in der Schweiz. Bern: Akademien der Wissenschaften Schweiz.
  • Hirsch, S; Baumberger, R; Grossniklaus, U (2013). Epigenetic variation, inheritance, and selection in plant populations. Cold Spring Harbor Symposia on Quantitative Biology, 77:97-104.
  • Barrell, Philippa; Grossniklaus, Ueli (2013). Examining female meiocytes of maize by confocal microscopy. In: Pawlowski, Wojciech; Grelon, Mathilde; Armstrong, Susan. Plant Meiosis : Methods and Protocols. Totowa: Springer (Bücher), 45-52.
  • Baroux, Célia; Autran, Daphné; Raissig, Michael T; Grimanelli, Daniel; Grossniklaus, Ueli (2013). Parental contributions to the transcriptome of early plant embryos. Current Opinion in Genetics & Development, 23(1):72-74.
  • Ngo, Quy A; Albrecht, Huguette; Tsuchimatsu, Takashi; Grossniklaus, Ueli (2013). The differentially regulated genes TvQR1 and TvPirin of the parasitic plant Triphysaria exhibit distinctive natural allelic diversity. BMC Plant Biology, 13:28.
  • Grossniklaus, Ueli; Kelly, William G; Kelly, Bill; Ferguson-Smith, Anne C; Pembrey, Marcus; Lindquist, Susan (2013). Transgenerational epigenetic inheritance: how important is it?. Nature Reviews. Genetics, 14(3):228-235.
  • Raissig, Michael T; Gagliardini, Valeria; Jaenisch, Johan; Grossniklaus, Ueli; Baroux, Célia (2013). Efficient and rapid isolation of early-stage embryos from Arabidopsis thaliana seeds. Journal of Visualized Experiments, (76):e50371.
  • Lindner, Matias; Simonini, Sara; Kooiker, Maarten; Gagliardini, Valeria; Somssich, Marc; Hohenstatt, Mareike; Simon, Rüdiger; Grossniklaus, Ueli; Kater, Martin M (2013). TAF13 interacts with PRC2 members and is essential for Arabidopsis seed development. Developmental Biology, 379(1):28-37.
  • Grob, Stefan; Schmid, Marc W; Luedtke, Nathan W; Wicker, Thomas; Grossniklaus, Ueli (2013). Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture. Genome Biology, 14:R129.
  • Raissig, Michael T; Bemer, Marian; Baroux, Célia; Grossniklaus, Ueli (2013). Genomic imprinting in the Arabidopsis embryo is partly regulated by PRC2. PLoS Genetics, 9(12):e1003862.
  • Lituiev, Dmytro S; Krohn, Nádia G; Müller, Bruno; Jackson, David; Hellriegel, Barbara; Dresselhaus, Thomas; Grossniklaus, Ueli (2013). Theoretical and experimental evidence indicates that there is no detectable auxin gradient in the angiosperm female gametophyte. Development, 140(22):4544-4553.
  • Boisson-Dernier, Aurélien; Lituiev, Dmytro S; Nestorova, Anna; Franck, Christina Maria; Thirugnanarajah, Sharme; Grossniklaus, Ueli (2013). ANXUR receptor-like kinases coordinate cell wall integrity with growth at the pollen tube tip via NADPH oxidases. PLoS Biology, 11(11):e1001719.
  • Lynch, Karlene H; Liang, Yongjie; Eberl, Leo; Wishart, David S; Dennis, Jonathan J (2013). Identification and characterization of ϕH111-1: A novel myovirus with broad activity against clinical isolates of Burkholderia cenocepacia. Bacteriophage, 3(4):e26649.
  • Groenhagen, Ulrike; Baumgartner, Rita; Bailly, Aurélien; Gardiner, Amber; Eberl, Leo; Schulz, Stefan; Weisskopf, Laure (2013). Production of bioactive volatiles by different Burkholderia ambifaria strains. Journal of Chemical Ecology, 39(7):892-906.
  • Carlier, Aurelien L; Omasits, Ulrich; Ahrens, Christian H; Eberl, Leo (2013). Proteomics analysis of Psychotria leaf nodule symbiosis: Improved genome annotation and metabolic predictions. Molecular Plant-Microbe Interactions, 26(11):1325-1333.
  • Suppiger, Angela; Schmid, Nadine; Aguilar, Claudio; Pessi, Gabriella; Eberl, Leo (2013). Two quorum sensing systems control biofilm formation and virulence in members of the Burkholderia cepacia complex. Virulence, 4(5):400-409.
  • Gomes, José; Huber, Natalie; Grunau, Alexander; Eberl, Leo; Gademann, Karl (2013). Fluorescent labeling agents for quorum-sensing receptors (FLAQS) in live cells. Chemistry - A European Journal, 19(30):9766-9770.
  • Sass, Andrea M; Schmerk, Crystal; Agnoli, Kirsty; Norville, Phillip J; Eberl, Leo; Valvano, Miguel A; Mahenthiralingam, Eshwar (2013). The unexpected discovery of a novel low-oxygen-activated locus for the anoxic persistence of Burkholderia cenocepacia. The ISME journal, 7(8):1568-1581.
  • Gomes, José; Grunau, Alexander; Lawrence, Adrien K; Eberl, Leo; Gademann, Karl (2013). Bioinspired Surfaces Against Bacterial Infections. CHIMIA International Journal for Chemistry, 67(4):275-278.
  • Subramoni, S; Agnoli, K; Eberl, L; Lewenza, S; Sokol, P A (2013). Role of Burkholderia cenocepacia afcE and afcF genes in determining lipid-metabolism-associated phenotypes. Microbiology, 159(Pt_3):603-614.
  • O'Maoileidigh, D S; Wuest, S E; Rae, L; Raganelli, A; Ryan, P T; Kwasniewska, K; Das, P; Lohan, A J; Loftus, B; Graciet, E; Wellmer, F (2013). Control of reproductive floral organ identity specification in Arabidopsis by the C function regulator AGAMOUS. Plant Cell, 25(7):2482-2503.
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Pagination