Publications IPMB

ZORA Publication List

Publications

• 2013

  • Lozano-Durán, Rosa; Macho, Alberto P; Boutrot, Freddy; Segonzac, Cécile; Somssich, Imre E; Zipfel, Cyril (2013). The transcriptional regulator BZR1 mediates trade-off between plant innate immunity and growth. eLife, 2:e00983.
  • Galbiati, Francesca; Sinha Roy, Dola; Simonini, Sara; Cucinotta, Mara; Ceccato, Luca; Cuesta, Candela; Simaskova, Maria; Benkova, Eva; Kamiuchi, Yuri; Aida, Mitsuhiro; Weijers, Dolf; Simon, Rüdiger; Masiero, Simona; Colombo, Lucia (2013). An integrative model of the control of ovule primordia formation. The Plant Journal, 76(3):446-455.
  • Sun, Yadong; Li, Lei; Macho, Alberto P; Han, Zhifu; Hu, Zehan; Zipfel, Cyril; Zhou, Jian-Min; Chai, Jijie (2013). Structural Basis for flg22-Induced Activation of the Arabidopsis FLS2-BAK1 Immune Complex. Science, 342(6158):624-628.
  • Zhang, Weiguo; Fraiture, Malou; Kolb, Dagmar; Löffelhardt, Birgit; Desaki, Yoshitake; Boutrot, Freddy F G; Tör, Mahmut; Zipfel, Cyril; Gust, Andrea A; Brunner, Frédéric (2013). Arabidopsis receptor-like protein30 and receptor-like kinase suppressor of BIR1-1/EVERSHED mediate innate immunity to necrotrophic fungi. Plant Cell, 25(10):4227-4241.
  • Gregis, Veronica; Andrés, Fernando; Sessa, Alice; Guerra, Rosalinda F; Simonini, Sara; Mateos, Julieta L; Torti, Stefano; Zambelli, Federico; Prazzoli, Gian Marco; Bjerkan, Katrine N; Grini, Paul E; Pavesi, Giulio; Colombo, Lucia; Coupland, George; Kater, Martin M (2013). Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis. Genome Biology, 14(6):R56.
  • Asai, Shuta; Ichikawa, Tatsushi; Nomura, Hironari; Kobayashi, Michie; Kamiyoshihara, Yusuke; Mori, Hitoshi; Kadota, Yasuhiro; Zipfel, Cyril; Jones, Jonathan D G; Yoshioka, Hirofumi (2013). The Variable Domain of a Plant Calcium-dependent Protein Kinase (CDPK) Confers Subcellular Localization and Substrate Recognition for NADPH Oxidase. Journal of Biological Chemistry, 288(20):14332-14340.
  • Farid, Akhlaq; Gro Malinovsky, Frederikke; Veit, Christiane; Schoberer, Jennifer; Zipfel, Cyril; Strasser, Richard (2013). Specialized Roles of the Conserved Subunit OST3/6 of the Oligosaccharyltransferase Complex in Innate Immunity and Tolerance to Abiotic Stresses. Plant Physiology, 162(1):24-38.
  • Zipfel, Cyril (2013). Combined roles of ethylene and endogenous peptides in regulating plant immunity and growth. Proceedings of the National Academy of Sciences of the United States of America, 110(15):5748-5749.
  • Jia, Jizeng; Zhao, Shancen; et al (2013). Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature, 496(7443):91-95.
  • Ogura, Atsushi; Yoshida, Masa-aki; Moritaki, Takeya; Sese, Jun; Shimizu, Kentaro K; Sousounis, Konstantinos; Tsonis, Panagiotis A (2013). Loss of the six3/6 controlling pathways might have resulted in pinhole-eye evolution in Nautilus. Scientific Reports, 3:1432.
  • Nicaise, Valerie; Joe, Anna; Jeong, Byeong-ryool; Korneli, Christin; Boutrot, Freddy; Westedt, Isa; Staiger, Dorothee; Alfano, James R; Zipfel, Cyril (2013). Pseudomonas HopU1 modulates plant immune receptor levels by blocking the interaction of their mRNAs with GRP7. The EMBO Journal, 32(5):701-712.
  • Khurana, Neetika; Chauhan, Harsh; Khurana, Paramjit (2013). Wheat chloroplast targeted shsp26 promoter confers heat and abiotic stress inducible expression in transgenic arabidopsis plants. PLoS ONE, 8(1):e54418.
  • Middleton, Christopher P; Stein, Nils; Keller, Beat; Kilian, Benjamin; Wicker, Thomas (2013). Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity. The Plant Journal, 73(2):347-356.
  • Meekins, David A; Guo, Hou-Fu; Husodo, Satrio; Paasch, Bradley C; Bridges, Travis M; Santelia, Diana; Kötting, Oliver; Vander Kooi, Craig W; Gentry, Matthew S (2013). Structure of the Arabidopsis glucan phosphatase like sex four2 reveals a unique mechanism for starch dephosphorylation. Plant Cell, 25(6):2302-2314.
  • Seung, David; Thalmann, Matthias; Sparla, Francesca; Abou Hachem, Maher; Lee, Sang Kyu; Issakidis-Bourguet, Emmanuelle; Svensson, Birte; Zeeman, Samuel C; Santelia, Diana (2013). Arabidopsis thaliana AMY3 is a unique redox-regulated chloroplastic α-amylase. Journal of Biological Chemistry, 288(47):33620-33633.
  • Pomati, Francesco; Kraft, Nathan J B; Posch, Thomas; Eugster, Bettina; Jokela, Jukka; Ibelings, Bas W (2013). Individual cell based traits obtained by scanning flow-cytometry show selection by biotic and abiotic environmental factors during a phytoplankton spring bloom. PLoS ONE, 8(8):e71677.
  • Piwosz, K; Salcher, M M; Zeder, M; Ameryk, A; Pernthaler, J (2013). Seasonal dynamics and activity of typical freshwater bacteria in brackish waters of the Gulf of Gdańsk. Limnology and Oceanography, 58(3):817-826.
  • Pernthaler, Jakob (2013). Freshwater microbial communities. In: Rosenberg, Eugene; DeLong, Edward; Lory, Stefan. The Prokaryotes. Berlin Heidelberg: Springer, 97-112.
  • Corno, Gianluca; Villiger, Jörg; Pernthaler, Jakob (2013). Coaggregation in a microbial predator–prey system affects competition and trophic transfer efficiency. Ecology, 94(4):870-881.
  • Shabarova, Tanja; Widmer, Franco; Pernthaler, Jakob (2013). Mass effects meet species sorting: transformations of microbial assemblages in epiphreatic subsurface karst water pools. Environmental Microbiology, 15(9):2476-2488.
  • Salcher, Michaela M; Posch, Thomas; Pernthaler, Jakob (2013). In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake. The ISME journal, 7(5):896-907.
  • Piccini, Claudia; Conde, Daniel; Pernthaler, Jakob; Sommaruga, Ruben (2013). Photoalteration of macrophyte-derived chromophoric dissolved organic matter induces growth of single bacterial populations in a coastal lagoon. Journal of Limnology, 72(3):582-591.
  • Garneau, Marie-Ève; Posch, Thomas; Hitz, Gregory; Pomerleau, François; Pradalier, Cédric; Siegwart, Roland; Pernthaler, Jakob (2013). Short-term displacement of Planktothrix rubescens (cyanobacteria) in a pre-alpine lake observed using an autonomous sampling platform. Limnology and Oceanography, 58(5):1892-1906.
  • Eiler, Alexander; Drakare, Stina; Bertilsson, Stefan; Pernthaler, Jakob; Peura, Sari; Rofner, Carina; Simek, Karel; Yang, Yang; Znachor, Petr; Lindström, Eva S (2013). Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach. PLoS ONE, 8(1):e53516.
  • Eckert, Ester M; Baumgartner, Michael; Huber, Iris M; Pernthaler, Jakob (2013). Grazing resistant freshwater bacteria profit from chitin and cell-wall-derived organic carbon. Environmental Microbiology, 15(7):2019-2030.
  • Derlon, Nicolas; Koch, Nicolas; Eugster, Bettina; Posch, Thomas; Pernthaler, Jakob; Pronk, Wouter; Morgenroth, Eberhard (2013). Activity of metazoa governs biofilm structure formation and enhances permeate flux during Gravity-Driven Membrane (GDM) filtration. Water research, 47(6):2085-2095.
  • Alonso, Cecilia; Piccini, Claudia; Unrein, Fernando; Bertoglio, Florencia; Conde, Daniel; Pernthaler, Jakob (2013). Environmental dynamics as a structuring factor for microbial carbon utilization in a subtropical coastal lagoon. Frontiers in Microbiology:4:14.
  • Sokoli, A. A study of mycoplasma suis pathomechanisms leading to immune modulation and hemorrhagic diathesis. 2013, University of Zurich, Faculty of Science.
  • Ocampo, Paolo Santiago S. Bacterial responses during antibiotic treatment. 2013, University of Zurich, Faculty of Science.
  • Honegger, R. Elias Landolt (24. Juli 1926 - 1. April 2013) Prof. Dr. sc. nat. ETH. In: Vierteljahresschrift der Naturforschenden Gesellschaft in Zürich, 158, 2013, p.105-106.
  • Honegger, R. In Memoriam Elias Landolt (Beiblatt zu den Briefen aus dem Botanischen Garten). In: Gartenbriefe. Briefe aus dem Botanischen Garten Zürich, 47/3, 2013, p.S1-S2.
  • Honegger, R. Ananas: Königin der Früchte. In: Gartenbriefe. Briefe aus dem Botanischen Garten Zürich, 47/1, 2013, p.1-2.
  • Zürcher, Evelyne; Tavor-Deslex, Deborah; Lituiev, Dmytro; Enkerli, Katalin; Tarr, Paul T; Müller, Bruno (2013). A robust and sensitive synthetic sensor to monitor the transcriptional output of the cytokinin signaling network in planta. Plant Physiology, 161(3):1066-1075.
  • Nyati, Shyam; Werth, Silke; Honegger, Rosmarie (2013). Genetic diversity of sterile cultured Trebouxia photobionts associated with the lichen-forming fungus Xanthoria parietina visualized with RAPD-PCR fingerprinting techniques. The Lichenologist, 45(06):825-840.
  • Nyati, Shyam; Bhattacharya, Debashish; Werth, Silke; Honegger, Rosmarie (2013). Phylogenetic analysis of LSU and SSU rDNA group I introns of lichen photobionts associated with the genera Xanthoria and Xanthomendoza (Teloschistaceae, lichenized Ascomycetes). Journal of Phycology, 49(6):1154-1166.
  • Edwards, Dianne; Axe, Lindsey; Honegger, Rosmarie (2013). Contributions to the diversity in cryptogamic covers in the mid-Palaeozoic: Nematothallus revisited. Botanical Journal of the Linnean Society, 173(4):505-534.
  • Honegger, Rosmarie; Axe, Lindsey; Edwards, Dianne (2013). Bacterial epibionts and endolichenic actinobacteria and fungi in the Lower Devonian lichen Chlorolichenomycites salopensis. Fungal Biology, 117(7-8):512-518.
  • Ammann, T. Advancement and structural analysis of a subgingival biofilm model system. 2013, University of Zurich, Faculty of Science.
  • Raissig, Michael T. Genomic imprinting in Arabidopsis thaliana – how is it regulated and where does it occur?. 2013, University of Zurich, Faculty of Science.
  • Middleton, Christopher. Genome composition and transposable element dynamics in triticeae, the use of chloroplast sequences to data divergence times and transcriptome analysis of transposable element expression. 2013, University of Zurich, Faculty of Science.
  • Shatalina, Margarita. Highresolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch on chromosome 3B of Bread Wheat (Triticum aestivum L). 2013, University of Zurich, Faculty of Science.
  • Selter, Liselotte Laurence. Functional validation of the durable disease resistance gene Lr34 in wheat and heterologous grass species. 2013, University of Zurich, Faculty of Science.
  • Sailer, Christian. The Relationship Between the Success of Invasive Plants and their Mode of Reproduction. 2013, University of Zurich, Faculty of Science.
  • Oberhänsli, Simone. A reference sequence for Blumeria graminis f. sp. tritici (wheat powdery mildew) and its application for comparative and evolutionary genomics. 2013, University of Zurich, Faculty of Science.
  • Mayank, Pururawa. Exploring the role of phosphorylation in Arabidopsis thaliana pollination-specific tissue by applying phosphoproteomics. 2013, University of Zurich, Faculty of Science.
  • Lituiev, D S. A theoretical and experimental study of cell specification in the female gametophyte. 2013, University of Zurich, Faculty of Science.
  • Kamber, Tim. Characterization of Erwinia amylovora - host plant and - biocontrol agent interactions. 2013, University of Zurich, Faculty of Science.
  • Christ, Bastien. Chlorophyll breakdown: modifications of colorless chlorophyll catabolites. 2013, University of Zurich, Faculty of Science.
  • Shabarova, Tatiana. Life in subsurface pools: Insight into microbial diversity and dynamics in the endokarst environment. 2013, University of Zurich, Faculty of Science.
  • Quiblier, Chantal Irene. RND proteins in Staphylococcus aureus: their function and impact on fitness, resistance and virulence. 2013, University of Zurich, Faculty of Science.
  • Eckert, Ester. Organic carbon uptake by bacteria with different live strategies – Successions and unexplored food web interactions. 2013, University of Zurich, Faculty of Science.
  • Nodzynski, Tomasz; Feraru, Mugurel I; Hirsch, Sibylle; De Rycke, Riet; Niculaes, Claudiu; Boerjan, Wout; Van Leene, Jelle; De Jaeger, Geert; Vanneste, Steffen; Friml, Jirí (2013). Retromer subunits VPS35A and VPS29 mediate prevacuolar compartment (PVC) function in Arabidopsis. Molecular Plant, 6(6):1849-1862.
  • Pires, Nuno D; Yi, Keke; Breuninger, Holger; Catarino, Bruno; Menand, Benoît; Dolan, Liam (2013). Recruitment and remodeling of an ancient gene regulatory network during land plant evolution. Proceedings of the National Academy of Sciences of the United States of America, 110(23):9571-9576.
  • Hayles, Jacqueline; Wood, Valerie; Jeffery, Linda; Hoe, Kwang-Lae; Kim, Dong-Uk; Park, Han-Oh; Salas-Pino, Silvia; Heichinger, Christian; Nurse, Paul (2013). A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biology, 3(5):130053.
  • Dengler, Vanina. Factors affecting antibiotic resistance of staphylococcus aureus. 2013, University of Zurich, Faculty of Science.
  • Spaniol, Violeta; Wyder, Stefan; Aebi, Christoph (2013). RNA-Seq-based analysis of the physiologic cold shock-induced changes in Moraxella catarrhalis gene expression. PLoS ONE, 8(7):e68298.
  • Kong, Yingying; Zhu, Yubin; Gao, Chen; She, Wenjing; Lin, Weiqiang; Chen, Yong; Han, Ning; Bian, Hongwu; Zhu, Muyuan; Wang, Junhui (2013). Tissue-specific expression of SMALL AUXIN UP RNA41 differentially regulates cell expansion and root meristem patterning in Arabidopsis. Plant & Cell Physiology, 54(4):609-621.
  • She, Wenjing; Grimanelli, Daniel; Rutowicz, Kinga; Whitehead, Marek W J; Puzio, Marcin; Kotlinski, Maciej; Jerzmanowski, Andrzej; Baroux, Célia (2013). Chromatin reprogramming during the somatic-to-reproductive cell fate transition in plants. Development, 140(19):4008-4019.
  • Braun, R; Grossniklaus, U; Gygax, D; Kohler, S; Matthias, P; Romeis, J; Sanvido, O; Stieger, P (2013). Gentechnisch veränderte Nutzpflanzen und ihre Bedeutung für eine nachhaltige Landwirtschaft in der Schweiz. Bern: Akademien der Wissenschaften Schweiz.
  • Hirsch, S; Baumberger, R; Grossniklaus, U (2013). Epigenetic variation, inheritance, and selection in plant populations. Cold Spring Harbor Symposia on Quantitative Biology, 77:97-104.
  • Barrell, Philippa; Grossniklaus, Ueli (2013). Examining female meiocytes of maize by confocal microscopy. In: Pawlowski, Wojciech; Grelon, Mathilde; Armstrong, Susan. Plant Meiosis : Methods and Protocols. Totowa: Springer (Bücher), 45-52.
  • Baroux, Célia; Autran, Daphné; Raissig, Michael T; Grimanelli, Daniel; Grossniklaus, Ueli (2013). Parental contributions to the transcriptome of early plant embryos. Current Opinion in Genetics & Development, 23(1):72-74.
  • Ngo, Quy A; Albrecht, Huguette; Tsuchimatsu, Takashi; Grossniklaus, Ueli (2013). The differentially regulated genes TvQR1 and TvPirin of the parasitic plant Triphysaria exhibit distinctive natural allelic diversity. BMC Plant Biology, 13:28.
  • Grossniklaus, Ueli; Kelly, William G; Kelly, Bill; Ferguson-Smith, Anne C; Pembrey, Marcus; Lindquist, Susan (2013). Transgenerational epigenetic inheritance: how important is it?. Nature Reviews. Genetics, 14(3):228-235.
  • Raissig, Michael T; Gagliardini, Valeria; Jaenisch, Johan; Grossniklaus, Ueli; Baroux, Célia (2013). Efficient and rapid isolation of early-stage embryos from Arabidopsis thaliana seeds. Journal of Visualized Experiments, (76):e50371.
  • Lindner, Matias; Simonini, Sara; Kooiker, Maarten; Gagliardini, Valeria; Somssich, Marc; Hohenstatt, Mareike; Simon, Rüdiger; Grossniklaus, Ueli; Kater, Martin M (2013). TAF13 interacts with PRC2 members and is essential for Arabidopsis seed development. Developmental Biology, 379(1):28-37.
  • Grob, Stefan; Schmid, Marc W; Luedtke, Nathan W; Wicker, Thomas; Grossniklaus, Ueli (2013). Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture. Genome Biology, 14:R129.
  • Raissig, Michael T; Bemer, Marian; Baroux, Célia; Grossniklaus, Ueli (2013). Genomic imprinting in the Arabidopsis embryo is partly regulated by PRC2. PLoS Genetics, 9(12):e1003862.
  • Lituiev, Dmytro S; Krohn, Nádia G; Müller, Bruno; Jackson, David; Hellriegel, Barbara; Dresselhaus, Thomas; Grossniklaus, Ueli (2013). Theoretical and experimental evidence indicates that there is no detectable auxin gradient in the angiosperm female gametophyte. Development, 140(22):4544-4553.
  • Boisson-Dernier, Aurélien; Lituiev, Dmytro S; Nestorova, Anna; Franck, Christina Maria; Thirugnanarajah, Sharme; Grossniklaus, Ueli (2013). ANXUR receptor-like kinases coordinate cell wall integrity with growth at the pollen tube tip via NADPH oxidases. PLoS Biology, 11(11):e1001719.
  • Lynch, Karlene H; Liang, Yongjie; Eberl, Leo; Wishart, David S; Dennis, Jonathan J (2013). Identification and characterization of ϕH111-1: A novel myovirus with broad activity against clinical isolates of Burkholderia cenocepacia. Bacteriophage, 3(4):e26649.
  • Groenhagen, Ulrike; Baumgartner, Rita; Bailly, Aurélien; Gardiner, Amber; Eberl, Leo; Schulz, Stefan; Weisskopf, Laure (2013). Production of bioactive volatiles by different Burkholderia ambifaria strains. Journal of Chemical Ecology, 39(7):892-906.
  • Carlier, Aurelien L; Omasits, Ulrich; Ahrens, Christian H; Eberl, Leo (2013). Proteomics analysis of Psychotria leaf nodule symbiosis: Improved genome annotation and metabolic predictions. Molecular Plant-Microbe Interactions, 26(11):1325-1333.
  • Suppiger, Angela; Schmid, Nadine; Aguilar, Claudio; Pessi, Gabriella; Eberl, Leo (2013). Two quorum sensing systems control biofilm formation and virulence in members of the Burkholderia cepacia complex. Virulence, 4(5):400-409.
  • Gomes, José; Huber, Natalie; Grunau, Alexander; Eberl, Leo; Gademann, Karl (2013). Fluorescent labeling agents for quorum-sensing receptors (FLAQS) in live cells. Chemistry - A European Journal, 19(30):9766-9770.
  • Sass, Andrea M; Schmerk, Crystal; Agnoli, Kirsty; Norville, Phillip J; Eberl, Leo; Valvano, Miguel A; Mahenthiralingam, Eshwar (2013). The unexpected discovery of a novel low-oxygen-activated locus for the anoxic persistence of Burkholderia cenocepacia. The ISME journal, 7(8):1568-1581.
  • Gomes, José; Grunau, Alexander; Lawrence, Adrien K; Eberl, Leo; Gademann, Karl (2013). Bioinspired Surfaces Against Bacterial Infections. CHIMIA International Journal for Chemistry, 67(4):275-278.
  • Subramoni, S; Agnoli, K; Eberl, L; Lewenza, S; Sokol, P A (2013). Role of Burkholderia cenocepacia afcE and afcF genes in determining lipid-metabolism-associated phenotypes. Microbiology, 159(Pt_3):603-614.
  • O'Maoileidigh, D S; Wuest, S E; Rae, L; Raganelli, A; Ryan, P T; Kwasniewska, K; Das, P; Lohan, A J; Loftus, B; Graciet, E; Wellmer, F (2013). Control of reproductive floral organ identity specification in Arabidopsis by the C function regulator AGAMOUS. Plant Cell, 25(7):2482-2503.
  • Buchmann, J P; Wicker, T; Keller, B (2013). Transposons in cereals: shaping genomes and driving their evolution. In: Gupta, P K; Varshney, P K. Cereal Genomics II. Dordrecht: Springer Science+Business Media Dordrecht, 127-154.
  • Pont, Caroline; Murat, Florent; Guizard, Sébastien; Flores, Raphael; Foucrier, Séverine; Bidet, Yannick; Quraishi, Umar Masood; Alaux, Michael; Doležel, Jaroslav; Fahima, Tzion; Budak, Hikmet; Keller, Beat; Salvi, Silvio; Maccaferri, Marco; Steinbach, Delphine; Feuillet, Catherine; Quesneville, Hadi; Salse, Jérôme (2013). Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. The Plant Journal, 76(6):1030-1044.
  • Raats, Dina; Frenkel, Zeev; Krugman, Tamar; Dodek, Itay; Sela, Hanan; Šimková, Hana; Magni, Federica; Cattonaro, Federica; Vautrin, Sonia; Bergès, Hélène; Wicker, Thomas; Keller, Beat; Leroy, Philippe; Philippe, Romain; Paux, Etienne; Doležel, Jaroslav; Feuillet, Catherine; Korol, Abraham; Fahima, Tzion (2013). The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution. Genome Biology, 14(12):R138.
  • Breen, James; Wicker, Thomas; Shatalina, Margarita; Frenkel, Zeev; Bertin, Isabelle; Philippe, Romain; Spielmeyer, Wolfgang; Šimková, Hana; Šafář, Jan; Cattonaro, Federica; Scalabrin, Simone; Magni, Federica; Vautrin, Sonia; Bergès, Hélène; Paux, Etienne; Fahima, Tzion; Doležel, Jaroslav; Korol, Abraham; Feuillet, Catherine; Keller, Beat (2013). A physical map of the short arm of wheat chromosome 1A. PLoS ONE, 8(11):e80272.
  • Kräutler, Bernhard; Hörtensteiner, Stefan (2013). Chlorophyll breakdown: Chemistry, biochemistry, and biology. In: Ferreira, G C; Kadish, K M; Smith, K M; Guilard, R. Handbook of Porphyrin Science (Volume 28). New Jersey, Kalifornien: World Scientific Publishing Co. Pte. Ltd., 117-185.
  • Hörtensteiner, Stefan (2013). The pathway of chlorophyll degradation: Catabolites, enzymes and pathway regulation. In: Biswal, B; Krupinska, K. Plastid Development in Leaves during Growth and Senescence. Dordrecht, The Netherlands: Springer Netherlands, 363-392.
  • Christ, Bastien; Süssenbacher, Iris; Moser, Simone; Bichsel, Nicole; Egert, Aurelie; Müller, Thomas; Kräutler, Bernhard; Hörtensteiner, Stefan (2013). Cytochrome P450 CYP89A9 is involved in the formation of major chlorophyll catabolites during leaf senescence in Arabidopsis. Plant Cell, 25(5):1868-1880.
  • Hörtensteiner, Stefan (2013). Update on the biochemistry of chlorophyll breakdown. Plant molecular biology, 82(6):505-517.
  • De Angeli, Alexis; Baetz, Ulrike; Francisco, Rita; Zhang, Jingbo; Chaves, Maria Manuela; Regalado, Ana (2013). The vacuolar channel VvALMT9 mediates malate and tartrate accumulation in berries of Vitis vinifera. Planta, 238(2):283-291.
  • De Angeli, Alexis; Zhang, Jingbo; Meyer, Stefan; Martinoia, Enrico (2013). AtALMT9 is a malate-activated vacuolar chloride channel required for stomatal opening in Arabidopsis. Nature Communications, 4:1804.
  • Ranocha, Philippe; Dima, Oana; Nagy, Réka; Felten, Judith; Corratgé-Faillie, Claire; Novák, Ondřej; Morreel, Kris; Lacombe, Benoît; Martinez, Yves; Pfrunder, Stephanie; Jin, Xu; Renou, Jean-Pierre; Thibaud, Jean-Baptiste; Ljung, Karin; Fischer, Urs; Martinoia, Enrico; Boerjan, Wout; Goffner, Deborah (2013). Arabidopsis WAT1 is a vacuolar auxin transport facilitator required for auxin homoeostasis. Nature Communications, 4:2625.
  • Shim, Donghwan; Kim, Sangwoo; Choi, Young-Im; Song, Won-Yong; Park, Jiyoung; Youk, Eun Soo; Jeong, Soon-Chun; Martinoia, Enrico; Noh, Eun-Woon; Lee, Youngsook (2013). Transgenic poplar trees expressing yeast cadmium factor 1 exhibit the characteristics necessary for the phytoremediation of mine tailing soil. Chemosphere, 90(4):1478-1486.
  • Kim, Sangwoo; Yamaoka, Yasuyo; Ono, Hirofumi; Kim, Hanul; Shim, Donghwan; Maeshima, Masayoshi; Martinoia, Enrico; Cahoon, Edgar B; Nishida, Ikuo; Lee, Youngsook (2013). AtABCA9 transporter supplies fatty acids for lipid synthesis to the endoplasmic reticulum. Proceedings of the National Academy of Sciences of the United States of America, 110(2):773-778.
  • Mumm, Patrick; Imes, Dennis; Martinoia, Enrico; Al-Rasheid, Khaled A S; Geiger, Dietmar; Marten, Irene; Hedrich, Rainer (2013). C-terminus-mediated voltage gating of arabidopsis guard cell anion channel QUAC1. Molecular Plant, 6(5):1550-1563.
  • Francisco, Rita Maria; Regalado, Ana; Ageorges, Agnès; Burla, Bo J; Bassin, Barbara; Eisenach, Cornelia; Zarrouk, Olfa; Vialet, Sandrine; Marlin, Thérèse; Chaves, Maria Manuela; Martinoia, Enrico; Nagy, Réka (2013). ABCC1, an ATP binding cassette protein from grape berry, transports anthocyanidin 3-O-Glucosides. Plant Cell, 25(5):1840-1854.
  • Zhang, Jingbo; Baetz, Ulrike; Krügel, Undine; Martinoia, Enrico; De Angeli, Alexis (2013). Identification of a probable pore-forming domain in the multimeric vacuolar anion channel AtALMT9. Plant Physiology, 163(2):830-843.
  • Burla, Bo; Pfrunder, Stefanie; Nagy, Réka; Francisco, Rita Maria; Lee, Youngsook; Martinoia, Enrico (2013). Vacuolar transport of abscisic acid glucosyl ester is mediated by ATP-binding cassette and proton-antiport mechanisms in Arabidopsis. Plant Physiology, 163(3):1446-1458.
  • Risk, Joanna M; Selter, Liselotte L; Chauhan, Harsh; Krattinger, Simon G; Kumlehn, Jochen; Hensel, Goetz; Viccars, Libby A; Richardson, Terese M; Buesing, Gabriele; Troller, Anna; Lagudah, Evans S; Keller, Beat (2013). The wheatLr34gene provides resistance against multiple fungal pathogens in barley. Plant Biotechnology Journal, 11(7):847-854.
  • Hurni, Severine; Brunner, Susanne; Buchmann, Gabriele; Herren, Gerhard; Jordan, Tina; Krukowski, Patricia; Wicker, Thomas; Yahiaoui, Nabila; Mago, Rohit; Keller, Beat (2013). RyePm8and wheatPm3are orthologous genes and show evolutionary conservation of resistance function against powdery mildew. The Plant Journal, 76(6):957-969.
  • Refardt, Dominik; Kümmerli, Rolf (2013). Defying bacteriophages: Contrasting altruistic with individual-based resistance mechanisms in Escherichia coli. Communicative & Integrative Biology, 6(5):e25159.
  • Dumas, Z; Ross-Gillespie, A; Kümmerli, Rolf (2013). Switching between apparently redundant iron-uptake mechanisms benefits bacteria in changeable environments. Proceedings of the Royal Society of London, Series B: Biological Sciences, 280(1764):20131055.
  • Refardt, D; Bergmiller, T; Kümmerli, Rolf (2013). Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London, Series B: Biological Sciences, 280(1759):20123035.
  • Li, Shaohui; Ji, Rui; Dudler, Robert; Yong, Mingli; Deng, Qide; Wang, Zhengyi; Hu, Dongwei (2013). Wheat gene TaS3 contributes to powdery mildew susceptibility. Plant Cell Reports, 32(12):1891-1901.
  • Hofstetter, Silvia Schelbert; Dudnik, Alexey; Widmer, Heidi; Dudler, Robert (2013). Arabidopsis YELLOW STRIPE-LIKE7 (YSL7) and YSL8 transporters mediate uptake of pseudomonas virulence factor syringolin A into plant cells. Molecular Plant-Microbe Interactions, 26(11):1302-1311.
  • Dudnik, A; Dudler, R (2013). High-quality draft genome sequence of pseudomonas syringae pv. Syringae Strain SM, isolated from wheat. Genome Announcements, 1(4):e00610-e00613.
  • Dudnik, Alexey; Dudler, Robert (2013). Non contiguous-finished genome sequence of Pseudomonas syringae pathovar syringae strain B64 isolated from wheat. Standards in Genomic Sciences, 8(3):420-429.
  • Dudler, Robert (2013). Manipulation of host proteasomes as a virulence mechanism of plant pathogens. Annual Review of Phytopathology, 51(1):521-542.
  • Fischer, Martin C; Rellstab, Christian; Tedder, Andrew; Zoller, Stefan; Gugerli, Felix; Shimizu, Kentaro K; Holderegger, Rolf; Widmer, Alex (2013). Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps. Molecular Ecology, 22(22):5594-5607.
  • Breitkopf, H; Schlüter, P M; Xu, S; Schiestl, F P; Cozzolino, S; Scopece, G (2013). Pollinator shifts between Ophrys sphegodes populations: might adaptation to different pollinators drive population divergence?. Journal of Evolutionary Biology, 26(10):2197-2208.
  • Karger, Dirk Nikolaus. Determinants of species diversity across spatial scales. 2013, University of Zurich, Faculty of Science.
  • Tsuchimatsu, Takashi; Shimizu, Kentaro K (2013). Effects of pollen availability and the mutation bias on the fixation of mutations disabling the male specificity of self-incompatibility. Journal of Evolutionary Biology, 26(10):2221-2232.
  • Sedeek, Khalid E M; Qi, Weihong; Schauer, Monica A; Gupta, Alok K; Poveda, Lucy; Xu, Shuqing; Liu, Zhong-Jian; Grossniklaus, Ueli; Schiestl, Florian P; Schlüter, Philipp M (2013). Transcriptome and proteome data reveal candidate genes for pollinator attraction in sexually deceptive Orchids. PLoS ONE, 8(5):e64621.
  • Wicker, Thomas; Oberhaensli, Simone; Parlange, Francis; Buchmann, Jan P; Shatalina, Margarita; Roffler, Stefan; Ben-David, Roi; Doležel, Jaroslav; Šimkova, Hana; Schulze-Lefert, Paul; Spanu, Pietro D; Bruggmann, Rémy; Amselem, Joelle; Quesneville, Hadi; van Themaat, Emiel Ver Loren; Paape, Timothy; Shimizu, Kentaro K; Keller, Beat (2013). The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nature Genetics, 45(9):1092-1096.
  • Szovenyi, Peter; Ricca, Mariana; Hock, Zsofia; Shaw, Jonathan A; Shimizu, Kentaro K; Wagner, Andreas (2013). Selection is no more efficient in haploid than in diploid life stages of an angiosperm and a moss. Molecular Biology and Evolution, 30(8):1929-1939.
  • Kobayashi, Masaki J; Takeuchi, Yayoi; Kenta, Tanaka; Kume, Tomonori; Diway, Bibian; Shimizu, Kentaro K (2013). Mass flowering of the tropical tree Shorea beccariana was preceded by expression changes in flowering and drought-responsive genes. Molecular Ecology, 22(18):4767-4782.
  • Sakuraba, Yasuhito; Kim, Ye-Sol; Yoo, Soo-Cheul; Hörtensteiner, Stefan; Paek, Nam-Chon (2013). 7-Hydroxymethyl chlorophyll a reductase functions in metabolic channeling of chlorophyll breakdown intermediates during leaf senescence. Biochemical and Biophysical Research Communications, 430(1):32-37.
  • Vogler, Hannes; Draeger, Christian; Weber, Alain; Felekis, Dimitris; Eichenberger, Christof; Routier-Kierzkowska, Anne-Lise; Boisson-Dernier, Aurélien; Ringli, Christoph; Nelson, Bradley J; Smith, Richard S; Grossniklaus, Ueli (2013). The pollen tube: a soft shell with a hard core. The Plant Journal, 73(4):617-627.
  • Wuest, Samuel E; Schmid, Marc W; Grossniklaus, Ueli (2013). Cell-specific expression profiling of rare cell types as exemplified by its impact on our understanding of female gametophyte development. Current Opinion in Plant Biology, 16(1):41-49.
  • Honegger, Rosmarie; Edwards, Dianne; Axe, Lindsey (2013). The earliest records of internally stratified cyanobacterial and algal lichens from the Lower Devonian of the Welsh Borderland. New Phytologist, 197(1):264-275.
  • Schwager, S; Agnoli, K; Kothe, M; Feldmann, F; Givskov, M; Carlier, A; Eberl, L (2013). Identification of Burkholderia cenocepacia Strain H111 virulence factors using nonmammalian infection hosts. Infection and Immunity, 81(1):143-153.
  • Gomes, José; Grunau, Alexander; Lawrence, Adrien K; Eberl, Leo; Gademann, Karl (2013). Bioinspired, releasable quorum sensing modulators. Chemical Communications, 49(2):155-157.
  • Dudnik, Alexey; Bigler, Laurent; Dudler, Robert (2013). Heterologous expression of a Photorhabdus luminescens syrbactin-like gene cluster results in production of the potent proteasome inhibitor glidobactin A. Microbiological Research, 168(2):73-76.
  • Schmidt, Anja; Wöhrmann, Heike J P; Raissig, Michael T; Arand, Julia; Gheyselinck, Jacqueline; Gagliardini, Valeria; Heichinger, Christian; Walter, Joern; Grossniklaus, Ueli (2013). The Polycomb group protein MEDEA and the DNA methyltransferase MET1 interact in Arabidopsis to repress autonomous endosperm development. The Plant Journal, 73(5):776-787.
  • Shatalina, Margarita; Wicker, Thomas; Buchmann, Jan P; Oberhaensli, Simone; Simková, Hana; Doležel, Jaroslav; Keller, Beat (2013). Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno. Plant biotechnology journal, 11(1):23-32.
  • Krattinger, Simon G; Jordan, David R; Mace, Emma S; Raghavan, Chitra; Luo, Ming-Cheng; Keller, Beat; Lagudah, Evans S (2013). Recent emergence of the wheat Lr34 multi-pathogen resistance: insights from haplotype analysis in wheat, rice, sorghum and Aegilops tauschii. Theoretical and Applied Genetics, 126(3):663-672.
  • Kobayashi, Masaki J; Shimizu, Kentaro K (2013). Challenges in studies on flowering time: interfaces between phenological research and the molecular network of flowering genes. Ecological Research, 28(2):161-172.

• 2012

  • Blom, J F. Chemical interactions between aquatic microorganisms. 2012, University of Zurich, Faculty of Science.
  • Win, J; Chaparro-Garcia, A; Belhaj, K; Saunders, D G O; Yoshida, K; Dong, S; Schornack, S; Zipfel, Cyril; Robatzek, S; Hogenhout, S A; Kamoun, Sophien (2012). Effector Biology of Plant-Associated Organisms: Concepts and Perspectives. Cold Spring Harbor Symposia on Quantitative Biology, 77:235-247.
  • Simonini, Sara; Roig-Villanova, Irma; Gregis, Veronica; Colombo, Bilitis; Colombo, Lucia; Kater, Martin M (2012). Basic pentacysteine proteins mediate MADS domain complex binding to the DNA for tissue-specific expression of target genes in Arabidopsis. Plant Cell, 24(10):4163-4172.
  • Storari, Michelangelo; Bigler, Laurent; Gessler, Cesare; Broggini, Giovanni A L (2012). Assessment of the ochratoxin A production ability of Aspergillus tubingensis. Food Additives & Contaminants. Part A, Chemistry, Analysis, Control, Exposure & Risk Assessment, 29(9):1450-1454.
  • Wöhrmann, Heike J P; Gagliardini, Valeria; Raissig, Michael T; Wehrle, Wendelin; Arand, Julia; Schmidt, Anja; Tierling, Sascha; Page, Damian R; Schöb, Hanspeter; Walter, Jörn; Grossniklaus, Ueli (2012). Identification of a DNA methylation-independent imprinting control region at the Arabidopsis MEDEA locus. Genes and Development, 26(16):1837-1850.
  • D'Hont, Angélique; Denoeud, France; Aury, Jean-Marc; Baurens, Franc-Christophe; Carreel, Françoise; Garsmeur, Olivier; Noel, Benjamin; Bocs, Stéphanie; Droc, Gaëtan; Rouard, Mathieu; Da Silva, Corinne; Jabbari, Kamel; Cardi, Céline; Poulain, Julie; Souquet, Marlène; Labadie, Karine; Jourda, Cyril; Lengellé, Juliette; Rodier-Goud, Marguerite; Alberti, Adriana; Bernard, Maria; Correa, Margot; Ayyampalayam, Saravanaraj; Mckain, Michael R; Leebens-Mack, Jim; Burgess, Diane; Freeling, Mike; Mbéguié-A-Mbéguié, Didier; Chabannes, Matthieu; Wicker, Thomas; Panaud, Olivier; Barbosa, Jose; Hribova, Eva; Heslop-Harrison, Pat; Habas, Rémy; Rivallan, Ronan; Francois, Philippe; Poiron, Claire; Kilian, Andrzej; Burthia, Dheema; Jenny, Christophe; Bakry, Frédéric; Brown, Spencer; Guignon, Valentin; Kema, Gert; Dita, Miguel; Waalwijk, Cees; Joseph, Steeve; Dievart, Anne; Jaillon, Olivier; Leclercq, Julie; Argout, Xavier; Lyons, Eric; Almeida, Ana; Jeridi, Mouna; Dolezel, Jaroslav; Roux, Nicolas; Risterucci, Ange-Marie; Weissenbach, Jean; Ruiz, Manuel; Glaszmann, Jean-Christophe; Quétier, Francis; Yahiaoui, Nabila; Wincker, Patrick (2012). The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature, 488(7410):213-217.
  • Bourras, S; Meyer, M; Grandaubert, J; Lapalu, N; Fudal, I; Linglin, J; Ollivier, B; Blaise, F; Balesdent, M-H; Rouxel, T (2012). Incidence of Genome Structure, DNA Asymmetry, and Cell Physiology on T-DNA Integration in Chromosomes of the Phytopathogenic Fungus Leptosphaeria maculans. G3 : Genes, Genomes, Genetics, 2(8):891-904.
  • Monaghan, Jacqueline; Zipfel, Cyril (2012). Plant pattern recognition receptor complexes at the plasma membrane. Current Opinion in Plant Biology, 15(4):349-357.
  • Macho, Alberto P; Boutrot, Freddy; Rathjen, John P; Zipfel, Cyril (2012). Aspartate Oxidase Plays an Important Role in Arabidopsis Stomatal Immunity. Plant Physiology, 159(4):1845-1856.
  • Segonzac, Cécile; Nimchuk, Zachary L; Beck, Martina; Tarr, Paul T; Robatzek, Silke; Meyerowitz, Elliot M; Zipfel, Cyril (2012). The Shoot Apical Meristem Regulatory Peptide CLV3 Does Not Activate Innate Immunity. Plant Cell, 24(8):3186-3192.
  • Ramel, Christina; Baechler, Nando; Hildbrand, Michel; Meyer, Martin; Schädeli, David; Dudler, Robert (2012). Regulation of biosynthesis of syringolin a, a pseudomonas syringae virulence factor targeting the host proteasome. Molecular Plant-Microbe Interactions, 25(9):1198-1208.
  • Bencivenga, Stefano; Simonini, Sara; Benková, Eva; Colombo, Lucia (2012). The transcription factors BEL1 and SPL are required for cytokinin and auxin signaling during ovule development in Arabidopsis. Plant Cell, 24(7):2886-2897.
  • Dumas, Zoe; Kümmerli, Rolf (2012). Cost of cooperation rules selection for cheats in bacterial metapopulations. Journal of Evolutionary Biology, 25(3):473-484.
  • Jakobsen, Tim Holm; van Gennip, Maria; Phipps, Richard Kerry; Shanmugham, Meenakshi Sundaram; Christensen, Louise Dahl; Alhede, Morten; Skindersoe, Mette Eline; Rasmussen, Thomas Bovbjerg; Friedrich, Karlheinz; Uthe, Friedrich; Jensen, Peter Østrup; Moser, Claus; Nielsen, Kristian Fog; Eberl, Leo; Larsen, Thomas Ostenfeld; Tanner, David; Høiby, Niels; Bjarnsholt, Thomas; Givskov, Michael (2012). Ajoene, a sulfur rich molecule from garlic, inhibits genes controlled by quorum sensing. Antimicrobial Agents and Chemotherapy, 56(5):2314-2325.
  • Roux, Milena; Zipfel, Cyril (2012). Receptor Kinase Interactions: Complexity of Signalling. In: Tax, Frans; Kemmerling, Birgit. Receptor-like kinases in plants : from development to defense. Berlin: Springer, 145-172.
  • Posch, Thomas; Köster, Oliver; Salcher, Michaela M; Pernthaler, Jakob (2012). Harmful filamentous cyanobacteria favoured by reduced water turnover with lake warming. Nature Climate Change, 2(11):809-813.
  • Horňák, Karel; Corno, Gianluca (2012). Every coin has a back side: invasion by limnohabitans planktonicus promotes the maintenance of species diversity in bacterial communities. PLoS ONE, 7(12):e51576.
  • Buchmann, Jan P; Matsumoto, Takashi; Stein, Nils; Keller, Beat; Wicker, Thomas (2012). Inter-species sequence comparison of Brachypodium reveals how transposon activity corrodes genome colinearity. The Plant Journal, 71(4):550-563.
  • Martis, M M; Klemme, S; Banaei-Moghaddam, A M; Blattner, F R; Macas, J; Schmutzer, T; Scholz, Uwe; Gundlach, H; Wicker, T; Simkova, H; Novak, P; Neumann, P; Kubalakova, M; Bauer, E; Haseneyer, G; Fuchs, J; Dolezel, J; Stein, N; Mayer, K F X; Houben, A (2012). Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proceedings of the National Academy of Sciences of the United States of America, 109(33):13343-13346.
  • Khurana, Neetika; Chauhan, Harsh; Khurana, Paramjit (2012). Expression analysis of a heat-inducible, Myo-inositol-1-phosphate synthase (MIPS) gene from wheat and the alternatively spliced variants of rice and Arabidopsis. Plant Cell Reports, 31(1):237-251.
  • Chauhan, Harsh; Khurana, Neetika; Nijhavan, Aashima; Khurana, Jitendra p; Khurana, Paramjit (2012). The wheat chloroplastic small heat shock protein (sHSP26) is involved in seed maturation and germination and imparts tolerance to heat stress. Plant, cell & environment, 35(11):1912-1931.
  • Saharan, M S; Tiwari, R; Krattinger, S G; Keller, B; Priyamvada, A (2012). Mapping of Indian bread wheat population, HS 2189 x Agra Local for adult plant leaf rust resistance, Lr34. Indian Phytopathology, 65:128-132.
  • Manickavelu, A; Kawaura, K; Oishi, K; Shin-I, T; Kohara, Y; Yahiaoui, N; Keller, B; Abe, R; Suzuki, A; Nagayama, T; Yano, K; Ogihara, Y (2012). Comprehensive functional analyses of expressed sequence tags in common wheat (triticum aestivum). DNA Research, 19(2):165-177.
  • Keller, B (2012). Erfahrungen mit den Feldversuchen im Rahmen des NFP59. In: Nutzen und Risiken der Freisetzung gentechnisch veränderter Pflanzen. In: NFP. Nutzen und Risiken der Freisetzung gentechnisch veränderter Pflanzen. Zürich, CH: Vdf Hochschulverlag AG, ETH Zürich, 226-237.
  • Mascher, F; Matasci, C; Kneubuehler, Y; Kellenberger, S; Diaz Quijano, C; Keller, B; Sautter, C; Schori, A (2012). Die Resistenz transgener Weizenlinien gegen Pilzkrankheiten im Feldversuch. Agrarforschung Schweiz, 3(6):298-305.
  • Ringli, Christoph; Kuhn, Benjamin M; Bigler, Laurent (2012). Cell Growth Processes in Arabidopsis thaliana are Modified by Flavonols. CHIMIA International Journal for Chemistry, 66(9):714.
  • Njau, P N; Bhavani, S; Huerta-Espino, J; Keller, B; Singh, R P (2012). Identification of QTL associated with durable adult plant resistance to stem rust Ug99 in wheat cultivar 'Pavon 76'. Euphytica:online.
  • Jacquat, C (2012). Andermatt / Golf (canton d’Uri, Suisse). Analyses carpologiques. Aarau, Switzerland: Prospect GmbH.
  • Schwager, S. The use of non-mammalian infection models to study the pathogenicity of Pseudomonas aeruginosa and members of the genus Burkholderia. 2012, University of Zurich, Faculty of Science.
  • Ramel, C F. Syringolin A: Biosynthesis, Regulation and Effects in Plants. 2012, University of Zurich, Faculty of Science.
  • John, F. The TOR pathway, a central relay linking cell growth and cell wall dynamics in Arabidopsis thaliana. 2012, University of Zurich, Faculty of Science.
  • Buchmann, J P. Analysis of DNA-transposons in the genome of Brachypodium distachyon reveals mechanisms for intergenic sequence turnover. 2012, University of Zurich, Faculty of Science.
  • Jaciubek, M. Attempts to engineer parthenogenesis in Arabidopsis thaliana. 2012, University of Zurich, Faculty of Science.
  • Draeger, Christian. A genetic, biochemical, and biomechanical study of plant cell wall dynamics in pollen tubes. 2012, University of Zurich, Faculty of Science.
  • Burla, Bo Johannes. Evolutionary analysis of abcc transporters and characterization of vacuolar transport mechanisms of the glucosylated phytohormone absicisic acid. 2012, University of Zurich, Faculty of Science.
  • Castella, Daniel; Buard, Jean-Francois; David-Elbiali, Mireille; Jacquat, Christiane; Northover, Peter J; Olive, Claude (2012). L’habitat de l’âge du Bronze moyen de Payerne «En Planeise» (canton de Vaud, Suisse). Lausanne: Cahiers d'archéologie romande.
  • Distefano, Gaetano; Hedhly, Afif; Las Casas, Giuseppina; La Malfa, Stefano; Herrero, Maria; Gentile, Alessandra (2012). Male–female interaction and temperature variation affect pollen performance in Citrus. Scientia Horticulturae, 140(1):1-7.
  • Pattanayak, Gopal K; Venkataramani, Sujatha; Hortensteiner, Stefan; Kunz, Lukas; Christ, Bastien; Moulin, Michael; Smith, Alison G; Okamoto, Yukihiro; Tamiaki, Hitoshi; Sugishima, Masakazu; Greenberg, Jean T (2012). Accelerated cell death 2 suppresses mitochondrial oxidative bursts and modulates cell death in Arabidopsis. The Plant Journal, 69(4):589-600.
  • Christ, Bastien; Schelbert, Silvia; Aubry, Sylvain; Süssenbacher, Iris; Müller, Thomas; Kräutler, Bernhard; Hörtensteiner, Stefan (2012). MES16, a member of the methylesterase protein family, specifically demethylates fluorescent chlorophyll catabolites during chlorophyll breakdown in Arabidopsis. Plant physiology, 158(2):628-641.
  • Sakuraba, Yasuhito; Schelbert, Silvia; Park, So-Yon; Han, Su-Hyun; Lee, Byoung-Doo; Andrès, Céline Besagni; Kessler, Felix; Hörtensteiner, Stefan; Paek, Nam-Chon (2012). STAY-GREEN and chlorophyll catabolic enzymes interact at light-harvesting complex II for chlorophyll detoxification during leaf senescence in Arabidopsis. Plant Cell, 24(2):507-518.
  • Grassl, Julia; Pružinská, Adriana; Hörtensteiner, Stefan; Taylor, Nicolas L; Millar, A Harvey (2012). Early events in plastid protein degradation in stay-green Arabidopsis reveal differential regulation beyond the retention of LHCII and chlorophyll. Journal of Proteome Research, 11(11):5443-5452.
  • Martinoia, Enrico; Meyer, Stefan; De Angeli, Alexis; Nagy, Réka (2012). Vacuolar transporters in their physiological context. Annual Review of Plant Biology, 63:183-213.
  • Park, Jiyoung; Song, Won-Yong; Ko, Donghwi; Eom, Yujin; Hansen, Thomas H; Schiller, Michaela; Lee, Tai Gyu; Martinoia, Enrico; Lee, Youngsook (2012). The phytochelatin transporters AtABCC1 and AtABCC2 mediate tolerance to cadmium and mercury. The Plant Journal, 69(2):278-288.
  • Schulze, Waltraud X; Schneider, Thomas; Starck, Sabrina; Martinoia, Enrico; Trentmann, Oliver (2012). Cold acclimation induces changes in Arabidopsis tonoplast protein abundance and activity and alters phosphorylation of tonoplast monosaccharide transporters. The Plant Journal, 69(3):529-541.
  • Kretzschmar, Tobias; Kohlen, Wouter; Sasse, Joelle; Borghi, Lorenzo; Schlegel, Markus; Bachelier, Julien B; Reinhardt, Didier; Bours, Ralph; Bouwmeester, Harro J; Martinoia, Enrico (2012). A petunia ABC protein controls strigolactone-dependent symbiotic signalling and branching. Nature, 483(7389):341-344.
  • Rienmüller, Florian; Dreyer, Ingo; Schönknecht, Gerald; Schulz, Alexander; Schumacher, Karin; Nagy, Réka; Martinoia, Enrico; Marten, Irene; Hedrich, Rainer (2012). Luminal and cytosolic pH feedback on proton pump activity and ATP affinity of V-type ATPase from Arabidopsis. Journal of Biological Chemistry, 287(12):8986-8993.
  • Alejandro, Santiago; Lee, Yuree; Tohge, Takayuki; Sudre, Damien; Osorio, Sonia; Park, Jiyoung; Bovet, Lucien; Lee, Youngsook; Geldner, Niko; Fernie, Alisdair R; Martinoia, Enrico (2012). AtABCG29 is a monolignol transporter involved in lignin biosynthesis. Current Biology, 22(13):1207-1212.
  • Badri, Dayakar V; Chaparro, Jacqueline M; Manter, Daniel K; Martinoia, Enrico; Vivanco, Jorge M (2012). Influence of ATP-binding cassette transporters in root exudation of phytoalexins, signals, and in disease resistance. Frontiers in Plant Science:3:149.
  • Hassler, Sebastian; Lemke, Lilia; Jung, Benjamin; Möhlmann, Torsten; Krüger, Falco; Schumacher, Karin; Espen, Luca; Martinoia, Enrico; Neuhaus, H Ekkehard (2012). Lack of the Golgi phosphate transporter PHT4;6 causes strong developmental defects, constitutively activated disease resistance mechanisms and altered intracellular phosphate compartmentation in Arabidopsis. The Plant Journal, 72(5):732-744.
  • Schmid, Marc W; Schmidt, Anja; Klostermeier, Ulrich C; Barann, Matthias; Rosenstiel, Philip; Grossniklaus, Ueli (2012). A powerful method for transcriptional profiling of specific cell types in eukaryotes: laser-assisted microdissection and RNA sequencing. PLoS ONE, 7(1):e29685.
  • Petricka, Jalean J; Schauer, Monica A; Megraw, Molly; Breakfield, Natalie W; Thompson, J Will; Georgiev, Stoyan; Soderblom, Erik J; Ohler, Uwe; Moseley, Martin Arthur; Grossniklaus, Ueli; Benfey, Philip N (2012). The protein expression landscape of the Arabidopsis root. Proceedings of the National Academy of Sciences of the United States of America, 109(18):6811-6818.
  • Schmidt, Anja; Schmid, Marc W; Grossniklaus, Ueli (2012). Analysis of plant germline development by high-throughput RNA profiling: technical advances and new insights. The Plant Journal, 70(1):18-29.
  • You, Wanhui; Tyczewska, Agata; Spencer, Matthew; Daxinger, Lucia; Schmid, Marc W; Grossniklaus, Ueli; Simon, Stacey A; Meyers, Blake C; Matzke, Antonius J M; Matzke, Marjori (2012). Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana. BMC Plant Biology, 12:51.
  • Marshall, Alex; Aalen, Reidunn B; Audenaert, Dominique; Beeckman, Tom; Broadley, Martin R; Butenko, Melinka A; Caño-Delgado, Ana I; de Vries, Sacco; Dresselhaus, Thomas; Felix, Georg; Graham, Neil S; Foulkes, John; Granier, Christine; Greb, Thomas; Grossniklaus, Ueli; Hammond, John P; Heidstra, Renze; Hodgman, Charlie; Hothorn, Michael; Inzé, Dirk; Ostergaard, Lars; Russinova, Eugenia; Simon, Rüdiger; Skirycz, Aleksandra; Stahl, Yvonne; Zipfel, Cyril; De Smet, Ive (2012). Tackling drought stress: receptor-like kinases present new approaches. Plant Cell, 24(6):2262-2278.
  • Leshem, Yehoram; Johnson, Cameron; Wuest, Samuel E; Song, Xiaoya; Ngo, Quy A; Grossniklaus, Ueli; Sundaresan, Venkatesan (2012). Molecular characterization of the glauce mutant: a central cell-specific function is required for double fertilization in Arabidopsis. Plant Cell, 24(8):3264-3277.
  • Lindner, Heike; Müller, Lena Maria; Boisson-Dernier, Aurélien; Grossniklaus, Ueli (2012). CrRLK1L receptor-like kinases: not just another brick in the wall. Current Opinion in Plant Biology, 15(6):659-669.
  • Pires, Nuno D; Grossniklaus, Ueli (2012). How to fine-tune an epigenetic switch. Developmental Cell, 23(3):453-454.
  • Kritsas, Konstantinos; Wuest, Samuel E; Hupalo, Daniel; Kern, Andrew D; Wicker, Thomas; Grossniklaus, Ueli (2012). Computational analysis and characterization of UCE-like elements (ULEs) in plant genomes. Genome Research, 22(12):2455-2466.
  • Ngo, Quy A; Baroux, Celia; Guthörl, Daniela; Mozerov, Peter; Collinge, Margaret A; Sundaresan, Venkatesan; Grossniklaus, Ueli (2012). The Armadillo repeat gene ZAK IXIK promotes Arabidopsis early embryo and endosperm development through a distinctive gametophytic maternal effect. Plant Cell, 24(10):4026-4043.
  • Iwano, Megumi; Ngo, Quy A; Entani, Tetsuyuki; Shiba, Hiroshi; Nagai, Takeharu; Miyawaki, Atsushi; Isogai, Akira; Grossniklaus, Ueli; Takayama, Seiji (2012). Cytoplasmic Ca2+ changes dynamically during the interaction of the pollen tube with synergid cells. Development, 139(22):4202-4209.
  • Sprunck, Stefanie; Rademacher, Svenja; Vogler, Frank; Gheyselinck, Jacqueline; Grossniklaus, Ueli; Dresselhaus, Thomas (2012). Egg cell-secreted EC1 triggers sperm cell activation during double fertilization. Science, 338(6110):1093-1097.
  • Lenton, Timothy M; Crouch, Michael; Johnson, Martin; Pires, Nuno; Dolan, Liam (2012). First plants cooled the Ordovician. Nature Geoscience, 5(2):86-89.
  • Pires, Nuno D; Dolan, Liam (2012). Morphological evolution in land plants: new designs with old genes. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 367(1588):508-518.
  • Xu, Meimei; Galhano, Rita; Wiemann, Philipp; Bueno, Emilio; Tiernan, Mollie; Wu, William; Chung, Ill-Min; Gershenzon, Jonathan; Tudzynski, Bettina; Sesma, Ane; Peters, Reuben J (2012). Genetic evidence for natural product-mediated plant-plant allelopathy in rice (Oryza sativa). New Phytologist, 193(3):570-575.
  • Ibarra, Christian A; Feng, Xiaoqi; Schoft, Vera K; Hsieh, Tzung-Fu; Uzawa, Rie; Rodrigues, Jessica A; Zemach, Assaf; Chumak, Nina; Machlicova, Adriana; Nishimura, Toshiro; Rojas, Denisse; Fischer, Robert L; Tamaru, Hisashi; Zilberman, Daniel (2012). Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science, 337(6100):1360-1364.
  • Hwang, Ildoo; Sheen, Jen; Müller, Bruno (2012). Cytokinin signaling networks. Annual Review of Plant Biology, 63:353-380.
  • Gerber, Simon D; Amann, Ruth; Wyder, Stefan; Trueb, Beat (2012). Comparison of the gene expression profiles from normal and Fgfrl1 deficient mouse kidneys reveals downstream targets of Fgfrl1 signaling. PLoS ONE, 7(3):e33457.
  • Honegger, R (2012). The symbiotic phenotype of lichen-forming ascomycetes and their endo- and epibionts. In: Hock, Bertold. Fungal Associations. Berlin, Heidelberg: Springer, 287-339.
  • Honegger, R (2012). In Memoriam. Nicolaas Christianus Johannes (Nico) Duijvestijn (1941-2012). Briefe aus dem Botanischen Garten Zürich:1.
  • Honegger, R (2012). Zauberhafte Zitrusfrüchte (Citrus-Arten). Briefe aus dem Botanischen Garten Zürich, 46(1):1-2.
  • Honegger, R (2012). Faszinierendes Reich der Pilze. Weder Tier noch Pflanze. 4 bis 8: Fachzeitschrift für Kindergarten und Unterstufe, (6):16-19.
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