Publications IPMB

ZORA Publication List

Publications

• 2012

  • Blom, J F. Chemical interactions between aquatic microorganisms. 2012, University of Zurich, Faculty of Science.
  • Win, J; Chaparro-Garcia, A; Belhaj, K; Saunders, D G O; Yoshida, K; Dong, S; Schornack, S; Zipfel, Cyril; Robatzek, S; Hogenhout, S A; Kamoun, Sophien (2012). Effector Biology of Plant-Associated Organisms: Concepts and Perspectives. Cold Spring Harbor Symposia on Quantitative Biology, 77:235-247.
  • Simonini, Sara; Roig-Villanova, Irma; Gregis, Veronica; Colombo, Bilitis; Colombo, Lucia; Kater, Martin M (2012). Basic pentacysteine proteins mediate MADS domain complex binding to the DNA for tissue-specific expression of target genes in Arabidopsis. Plant Cell, 24(10):4163-4172.
  • Storari, Michelangelo; Bigler, Laurent; Gessler, Cesare; Broggini, Giovanni A L (2012). Assessment of the ochratoxin A production ability of Aspergillus tubingensis. Food Additives & Contaminants. Part A, Chemistry, Analysis, Control, Exposure & Risk Assessment, 29(9):1450-1454.
  • Wöhrmann, Heike J P; Gagliardini, Valeria; Raissig, Michael T; Wehrle, Wendelin; Arand, Julia; Schmidt, Anja; Tierling, Sascha; Page, Damian R; Schöb, Hanspeter; Walter, Jörn; Grossniklaus, Ueli (2012). Identification of a DNA methylation-independent imprinting control region at the Arabidopsis MEDEA locus. Genes and Development, 26(16):1837-1850.
  • D'Hont, Angélique; Denoeud, France; Aury, Jean-Marc; Baurens, Franc-Christophe; Carreel, Françoise; Garsmeur, Olivier; Noel, Benjamin; Bocs, Stéphanie; Droc, Gaëtan; Rouard, Mathieu; Da Silva, Corinne; Jabbari, Kamel; Cardi, Céline; Poulain, Julie; Souquet, Marlène; Labadie, Karine; Jourda, Cyril; Lengellé, Juliette; Rodier-Goud, Marguerite; Alberti, Adriana; Bernard, Maria; Correa, Margot; Ayyampalayam, Saravanaraj; Mckain, Michael R; Leebens-Mack, Jim; Burgess, Diane; Freeling, Mike; Mbéguié-A-Mbéguié, Didier; Chabannes, Matthieu; Wicker, Thomas; Panaud, Olivier; Barbosa, Jose; Hribova, Eva; Heslop-Harrison, Pat; Habas, Rémy; Rivallan, Ronan; Francois, Philippe; Poiron, Claire; Kilian, Andrzej; Burthia, Dheema; Jenny, Christophe; Bakry, Frédéric; Brown, Spencer; Guignon, Valentin; Kema, Gert; Dita, Miguel; Waalwijk, Cees; Joseph, Steeve; Dievart, Anne; Jaillon, Olivier; Leclercq, Julie; Argout, Xavier; Lyons, Eric; Almeida, Ana; Jeridi, Mouna; Dolezel, Jaroslav; Roux, Nicolas; Risterucci, Ange-Marie; Weissenbach, Jean; Ruiz, Manuel; Glaszmann, Jean-Christophe; Quétier, Francis; Yahiaoui, Nabila; Wincker, Patrick (2012). The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature, 488(7410):213-217.
  • Bourras, S; Meyer, M; Grandaubert, J; Lapalu, N; Fudal, I; Linglin, J; Ollivier, B; Blaise, F; Balesdent, M-H; Rouxel, T (2012). Incidence of Genome Structure, DNA Asymmetry, and Cell Physiology on T-DNA Integration in Chromosomes of the Phytopathogenic Fungus Leptosphaeria maculans. G3 : Genes, Genomes, Genetics, 2(8):891-904.
  • Monaghan, Jacqueline; Zipfel, Cyril (2012). Plant pattern recognition receptor complexes at the plasma membrane. Current Opinion in Plant Biology, 15(4):349-357.
  • Macho, Alberto P; Boutrot, Freddy; Rathjen, John P; Zipfel, Cyril (2012). Aspartate Oxidase Plays an Important Role in Arabidopsis Stomatal Immunity. Plant Physiology, 159(4):1845-1856.
  • Segonzac, Cécile; Nimchuk, Zachary L; Beck, Martina; Tarr, Paul T; Robatzek, Silke; Meyerowitz, Elliot M; Zipfel, Cyril (2012). The Shoot Apical Meristem Regulatory Peptide CLV3 Does Not Activate Innate Immunity. Plant Cell, 24(8):3186-3192.
  • Ramel, Christina; Baechler, Nando; Hildbrand, Michel; Meyer, Martin; Schädeli, David; Dudler, Robert (2012). Regulation of biosynthesis of syringolin a, a pseudomonas syringae virulence factor targeting the host proteasome. Molecular Plant-Microbe Interactions, 25(9):1198-1208.
  • Bencivenga, Stefano; Simonini, Sara; Benková, Eva; Colombo, Lucia (2012). The transcription factors BEL1 and SPL are required for cytokinin and auxin signaling during ovule development in Arabidopsis. Plant Cell, 24(7):2886-2897.
  • Dumas, Zoe; Kümmerli, Rolf (2012). Cost of cooperation rules selection for cheats in bacterial metapopulations. Journal of Evolutionary Biology, 25(3):473-484.
  • Jakobsen, Tim Holm; van Gennip, Maria; Phipps, Richard Kerry; Shanmugham, Meenakshi Sundaram; Christensen, Louise Dahl; Alhede, Morten; Skindersoe, Mette Eline; Rasmussen, Thomas Bovbjerg; Friedrich, Karlheinz; Uthe, Friedrich; Jensen, Peter Østrup; Moser, Claus; Nielsen, Kristian Fog; Eberl, Leo; Larsen, Thomas Ostenfeld; Tanner, David; Høiby, Niels; Bjarnsholt, Thomas; Givskov, Michael (2012). Ajoene, a sulfur rich molecule from garlic, inhibits genes controlled by quorum sensing. Antimicrobial Agents and Chemotherapy, 56(5):2314-2325.
  • Roux, Milena; Zipfel, Cyril (2012). Receptor Kinase Interactions: Complexity of Signalling. In: Tax, Frans; Kemmerling, Birgit. Receptor-like kinases in plants : from development to defense. Berlin: Springer, 145-172.
  • Posch, Thomas; Köster, Oliver; Salcher, Michaela M; Pernthaler, Jakob (2012). Harmful filamentous cyanobacteria favoured by reduced water turnover with lake warming. Nature Climate Change, 2(11):809-813.
  • Horňák, Karel; Corno, Gianluca (2012). Every coin has a back side: invasion by limnohabitans planktonicus promotes the maintenance of species diversity in bacterial communities. PLoS ONE, 7(12):e51576.
  • Buchmann, Jan P; Matsumoto, Takashi; Stein, Nils; Keller, Beat; Wicker, Thomas (2012). Inter-species sequence comparison of Brachypodium reveals how transposon activity corrodes genome colinearity. The Plant Journal, 71(4):550-563.
  • Martis, M M; Klemme, S; Banaei-Moghaddam, A M; Blattner, F R; Macas, J; Schmutzer, T; Scholz, Uwe; Gundlach, H; Wicker, T; Simkova, H; Novak, P; Neumann, P; Kubalakova, M; Bauer, E; Haseneyer, G; Fuchs, J; Dolezel, J; Stein, N; Mayer, K F X; Houben, A (2012). Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proceedings of the National Academy of Sciences of the United States of America, 109(33):13343-13346.
  • Khurana, Neetika; Chauhan, Harsh; Khurana, Paramjit (2012). Expression analysis of a heat-inducible, Myo-inositol-1-phosphate synthase (MIPS) gene from wheat and the alternatively spliced variants of rice and Arabidopsis. Plant Cell Reports, 31(1):237-251.
  • Chauhan, Harsh; Khurana, Neetika; Nijhavan, Aashima; Khurana, Jitendra p; Khurana, Paramjit (2012). The wheat chloroplastic small heat shock protein (sHSP26) is involved in seed maturation and germination and imparts tolerance to heat stress. Plant, cell & environment, 35(11):1912-1931.
  • Saharan, M S; Tiwari, R; Krattinger, S G; Keller, B; Priyamvada, A (2012). Mapping of Indian bread wheat population, HS 2189 x Agra Local for adult plant leaf rust resistance, Lr34. Indian Phytopathology, 65:128-132.
  • Manickavelu, A; Kawaura, K; Oishi, K; Shin-I, T; Kohara, Y; Yahiaoui, N; Keller, B; Abe, R; Suzuki, A; Nagayama, T; Yano, K; Ogihara, Y (2012). Comprehensive functional analyses of expressed sequence tags in common wheat (triticum aestivum). DNA Research, 19(2):165-177.
  • Keller, B (2012). Erfahrungen mit den Feldversuchen im Rahmen des NFP59. In: Nutzen und Risiken der Freisetzung gentechnisch veränderter Pflanzen. In: NFP. Nutzen und Risiken der Freisetzung gentechnisch veränderter Pflanzen. Zürich, CH: Vdf Hochschulverlag AG, ETH Zürich, 226-237.
  • Mascher, F; Matasci, C; Kneubuehler, Y; Kellenberger, S; Diaz Quijano, C; Keller, B; Sautter, C; Schori, A (2012). Die Resistenz transgener Weizenlinien gegen Pilzkrankheiten im Feldversuch. Agrarforschung Schweiz, 3(6):298-305.
  • Ringli, Christoph; Kuhn, Benjamin M; Bigler, Laurent (2012). Cell Growth Processes in Arabidopsis thaliana are Modified by Flavonols. CHIMIA International Journal for Chemistry, 66(9):714.
  • Njau, P N; Bhavani, S; Huerta-Espino, J; Keller, B; Singh, R P (2012). Identification of QTL associated with durable adult plant resistance to stem rust Ug99 in wheat cultivar 'Pavon 76'. Euphytica:online.
  • Jacquat, C (2012). Andermatt / Golf (canton d’Uri, Suisse). Analyses carpologiques. Aarau, Switzerland: Prospect GmbH.
  • Schwager, S. The use of non-mammalian infection models to study the pathogenicity of Pseudomonas aeruginosa and members of the genus Burkholderia. 2012, University of Zurich, Faculty of Science.
  • Ramel, C F. Syringolin A: Biosynthesis, Regulation and Effects in Plants. 2012, University of Zurich, Faculty of Science.
  • John, F. The TOR pathway, a central relay linking cell growth and cell wall dynamics in Arabidopsis thaliana. 2012, University of Zurich, Faculty of Science.
  • Buchmann, J P. Analysis of DNA-transposons in the genome of Brachypodium distachyon reveals mechanisms for intergenic sequence turnover. 2012, University of Zurich, Faculty of Science.
  • Jaciubek, M. Attempts to engineer parthenogenesis in Arabidopsis thaliana. 2012, University of Zurich, Faculty of Science.
  • Draeger, Christian. A genetic, biochemical, and biomechanical study of plant cell wall dynamics in pollen tubes. 2012, University of Zurich, Faculty of Science.
  • Burla, Bo Johannes. Evolutionary analysis of abcc transporters and characterization of vacuolar transport mechanisms of the glucosylated phytohormone absicisic acid. 2012, University of Zurich, Faculty of Science.
  • Castella, Daniel; Buard, Jean-Francois; David-Elbiali, Mireille; Jacquat, Christiane; Northover, Peter J; Olive, Claude (2012). L’habitat de l’âge du Bronze moyen de Payerne «En Planeise» (canton de Vaud, Suisse). Lausanne: Cahiers d'archéologie romande.
  • Distefano, Gaetano; Hedhly, Afif; Las Casas, Giuseppina; La Malfa, Stefano; Herrero, Maria; Gentile, Alessandra (2012). Male–female interaction and temperature variation affect pollen performance in Citrus. Scientia Horticulturae, 140(1):1-7.
  • Pattanayak, Gopal K; Venkataramani, Sujatha; Hortensteiner, Stefan; Kunz, Lukas; Christ, Bastien; Moulin, Michael; Smith, Alison G; Okamoto, Yukihiro; Tamiaki, Hitoshi; Sugishima, Masakazu; Greenberg, Jean T (2012). Accelerated cell death 2 suppresses mitochondrial oxidative bursts and modulates cell death in Arabidopsis. The Plant Journal, 69(4):589-600.
  • Christ, Bastien; Schelbert, Silvia; Aubry, Sylvain; Süssenbacher, Iris; Müller, Thomas; Kräutler, Bernhard; Hörtensteiner, Stefan (2012). MES16, a member of the methylesterase protein family, specifically demethylates fluorescent chlorophyll catabolites during chlorophyll breakdown in Arabidopsis. Plant physiology, 158(2):628-641.
  • Sakuraba, Yasuhito; Schelbert, Silvia; Park, So-Yon; Han, Su-Hyun; Lee, Byoung-Doo; Andrès, Céline Besagni; Kessler, Felix; Hörtensteiner, Stefan; Paek, Nam-Chon (2012). STAY-GREEN and chlorophyll catabolic enzymes interact at light-harvesting complex II for chlorophyll detoxification during leaf senescence in Arabidopsis. Plant Cell, 24(2):507-518.
  • Grassl, Julia; Pružinská, Adriana; Hörtensteiner, Stefan; Taylor, Nicolas L; Millar, A Harvey (2012). Early events in plastid protein degradation in stay-green Arabidopsis reveal differential regulation beyond the retention of LHCII and chlorophyll. Journal of Proteome Research, 11(11):5443-5452.
  • Martinoia, Enrico; Meyer, Stefan; De Angeli, Alexis; Nagy, Réka (2012). Vacuolar transporters in their physiological context. Annual Review of Plant Biology, 63:183-213.
  • Park, Jiyoung; Song, Won-Yong; Ko, Donghwi; Eom, Yujin; Hansen, Thomas H; Schiller, Michaela; Lee, Tai Gyu; Martinoia, Enrico; Lee, Youngsook (2012). The phytochelatin transporters AtABCC1 and AtABCC2 mediate tolerance to cadmium and mercury. The Plant Journal, 69(2):278-288.
  • Schulze, Waltraud X; Schneider, Thomas; Starck, Sabrina; Martinoia, Enrico; Trentmann, Oliver (2012). Cold acclimation induces changes in Arabidopsis tonoplast protein abundance and activity and alters phosphorylation of tonoplast monosaccharide transporters. The Plant Journal, 69(3):529-541.
  • Kretzschmar, Tobias; Kohlen, Wouter; Sasse, Joelle; Borghi, Lorenzo; Schlegel, Markus; Bachelier, Julien B; Reinhardt, Didier; Bours, Ralph; Bouwmeester, Harro J; Martinoia, Enrico (2012). A petunia ABC protein controls strigolactone-dependent symbiotic signalling and branching. Nature, 483(7389):341-344.
  • Rienmüller, Florian; Dreyer, Ingo; Schönknecht, Gerald; Schulz, Alexander; Schumacher, Karin; Nagy, Réka; Martinoia, Enrico; Marten, Irene; Hedrich, Rainer (2012). Luminal and cytosolic pH feedback on proton pump activity and ATP affinity of V-type ATPase from Arabidopsis. Journal of Biological Chemistry, 287(12):8986-8993.
  • Alejandro, Santiago; Lee, Yuree; Tohge, Takayuki; Sudre, Damien; Osorio, Sonia; Park, Jiyoung; Bovet, Lucien; Lee, Youngsook; Geldner, Niko; Fernie, Alisdair R; Martinoia, Enrico (2012). AtABCG29 is a monolignol transporter involved in lignin biosynthesis. Current Biology, 22(13):1207-1212.
  • Badri, Dayakar V; Chaparro, Jacqueline M; Manter, Daniel K; Martinoia, Enrico; Vivanco, Jorge M (2012). Influence of ATP-binding cassette transporters in root exudation of phytoalexins, signals, and in disease resistance. Frontiers in Plant Science:3:149.
  • Hassler, Sebastian; Lemke, Lilia; Jung, Benjamin; Möhlmann, Torsten; Krüger, Falco; Schumacher, Karin; Espen, Luca; Martinoia, Enrico; Neuhaus, H Ekkehard (2012). Lack of the Golgi phosphate transporter PHT4;6 causes strong developmental defects, constitutively activated disease resistance mechanisms and altered intracellular phosphate compartmentation in Arabidopsis. The Plant Journal, 72(5):732-744.
  • Schmid, Marc W; Schmidt, Anja; Klostermeier, Ulrich C; Barann, Matthias; Rosenstiel, Philip; Grossniklaus, Ueli (2012). A powerful method for transcriptional profiling of specific cell types in eukaryotes: laser-assisted microdissection and RNA sequencing. PLoS ONE, 7(1):e29685.
  • Petricka, Jalean J; Schauer, Monica A; Megraw, Molly; Breakfield, Natalie W; Thompson, J Will; Georgiev, Stoyan; Soderblom, Erik J; Ohler, Uwe; Moseley, Martin Arthur; Grossniklaus, Ueli; Benfey, Philip N (2012). The protein expression landscape of the Arabidopsis root. Proceedings of the National Academy of Sciences of the United States of America, 109(18):6811-6818.
  • Schmidt, Anja; Schmid, Marc W; Grossniklaus, Ueli (2012). Analysis of plant germline development by high-throughput RNA profiling: technical advances and new insights. The Plant Journal, 70(1):18-29.
  • You, Wanhui; Tyczewska, Agata; Spencer, Matthew; Daxinger, Lucia; Schmid, Marc W; Grossniklaus, Ueli; Simon, Stacey A; Meyers, Blake C; Matzke, Antonius J M; Matzke, Marjori (2012). Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana. BMC Plant Biology, 12:51.
  • Marshall, Alex; Aalen, Reidunn B; Audenaert, Dominique; Beeckman, Tom; Broadley, Martin R; Butenko, Melinka A; Caño-Delgado, Ana I; de Vries, Sacco; Dresselhaus, Thomas; Felix, Georg; Graham, Neil S; Foulkes, John; Granier, Christine; Greb, Thomas; Grossniklaus, Ueli; Hammond, John P; Heidstra, Renze; Hodgman, Charlie; Hothorn, Michael; Inzé, Dirk; Ostergaard, Lars; Russinova, Eugenia; Simon, Rüdiger; Skirycz, Aleksandra; Stahl, Yvonne; Zipfel, Cyril; De Smet, Ive (2012). Tackling drought stress: receptor-like kinases present new approaches. Plant Cell, 24(6):2262-2278.
  • Leshem, Yehoram; Johnson, Cameron; Wuest, Samuel E; Song, Xiaoya; Ngo, Quy A; Grossniklaus, Ueli; Sundaresan, Venkatesan (2012). Molecular characterization of the glauce mutant: a central cell-specific function is required for double fertilization in Arabidopsis. Plant Cell, 24(8):3264-3277.
  • Lindner, Heike; Müller, Lena Maria; Boisson-Dernier, Aurélien; Grossniklaus, Ueli (2012). CrRLK1L receptor-like kinases: not just another brick in the wall. Current Opinion in Plant Biology, 15(6):659-669.
  • Pires, Nuno D; Grossniklaus, Ueli (2012). How to fine-tune an epigenetic switch. Developmental Cell, 23(3):453-454.
  • Kritsas, Konstantinos; Wuest, Samuel E; Hupalo, Daniel; Kern, Andrew D; Wicker, Thomas; Grossniklaus, Ueli (2012). Computational analysis and characterization of UCE-like elements (ULEs) in plant genomes. Genome Research, 22(12):2455-2466.
  • Ngo, Quy A; Baroux, Celia; Guthörl, Daniela; Mozerov, Peter; Collinge, Margaret A; Sundaresan, Venkatesan; Grossniklaus, Ueli (2012). The Armadillo repeat gene ZAK IXIK promotes Arabidopsis early embryo and endosperm development through a distinctive gametophytic maternal effect. Plant Cell, 24(10):4026-4043.
  • Iwano, Megumi; Ngo, Quy A; Entani, Tetsuyuki; Shiba, Hiroshi; Nagai, Takeharu; Miyawaki, Atsushi; Isogai, Akira; Grossniklaus, Ueli; Takayama, Seiji (2012). Cytoplasmic Ca2+ changes dynamically during the interaction of the pollen tube with synergid cells. Development, 139(22):4202-4209.
  • Sprunck, Stefanie; Rademacher, Svenja; Vogler, Frank; Gheyselinck, Jacqueline; Grossniklaus, Ueli; Dresselhaus, Thomas (2012). Egg cell-secreted EC1 triggers sperm cell activation during double fertilization. Science, 338(6110):1093-1097.
  • Lenton, Timothy M; Crouch, Michael; Johnson, Martin; Pires, Nuno; Dolan, Liam (2012). First plants cooled the Ordovician. Nature Geoscience, 5(2):86-89.
  • Pires, Nuno D; Dolan, Liam (2012). Morphological evolution in land plants: new designs with old genes. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 367(1588):508-518.
  • Xu, Meimei; Galhano, Rita; Wiemann, Philipp; Bueno, Emilio; Tiernan, Mollie; Wu, William; Chung, Ill-Min; Gershenzon, Jonathan; Tudzynski, Bettina; Sesma, Ane; Peters, Reuben J (2012). Genetic evidence for natural product-mediated plant-plant allelopathy in rice (Oryza sativa). New Phytologist, 193(3):570-575.
  • Ibarra, Christian A; Feng, Xiaoqi; Schoft, Vera K; Hsieh, Tzung-Fu; Uzawa, Rie; Rodrigues, Jessica A; Zemach, Assaf; Chumak, Nina; Machlicova, Adriana; Nishimura, Toshiro; Rojas, Denisse; Fischer, Robert L; Tamaru, Hisashi; Zilberman, Daniel (2012). Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science, 337(6100):1360-1364.
  • Hwang, Ildoo; Sheen, Jen; Müller, Bruno (2012). Cytokinin signaling networks. Annual Review of Plant Biology, 63:353-380.
  • Gerber, Simon D; Amann, Ruth; Wyder, Stefan; Trueb, Beat (2012). Comparison of the gene expression profiles from normal and Fgfrl1 deficient mouse kidneys reveals downstream targets of Fgfrl1 signaling. PLoS ONE, 7(3):e33457.
  • Honegger, R (2012). The symbiotic phenotype of lichen-forming ascomycetes and their endo- and epibionts. In: Hock, Bertold. Fungal Associations. Berlin, Heidelberg: Springer, 287-339.
  • Honegger, R (2012). In Memoriam. Nicolaas Christianus Johannes (Nico) Duijvestijn (1941-2012). Briefe aus dem Botanischen Garten Zürich:1.
  • Honegger, R (2012). Zauberhafte Zitrusfrüchte (Citrus-Arten). Briefe aus dem Botanischen Garten Zürich, 46(1):1-2.
  • Honegger, R (2012). Faszinierendes Reich der Pilze. Weder Tier noch Pflanze. 4 bis 8: Fachzeitschrift für Kindergarten und Unterstufe, (6):16-19.
  • Honegger, R (2012). Aino Marjatta Henssen (1925–2011). Bryologist, 115(2):350-353.
  • Honegger, Rosmarie (2012). Differential gene expression within the cyanobacterial cell population of a lichen thallus. New Phytologist, 196(3):657-660.
  • Bemer, Marian; Karlova, Rumyana; Ballester, Ana Rosa; Tikunov, Yury M; et al (2012). The tomato FRUITFULL homologs TDR4/FUL1 and MBP7/FUL2 regulate ethylene-independent aspects of fruit ripening. Plant Cell, 24(11):4437-4451.
  • Neumann, Frank R; Dion, Vincent; Gehlen, Lutz R; Tsai-Pflugfelder, Monika; Schmid, Roger; Taddei, Angela; Gasser, Susan M (2012). Targeted INO80 enhances subnuclear chromatin movement and ectopic homologous recombination. Genes and Development, 26(4):369-383.
  • Mayank, Pururawa; Grossman, Jonas; Wuest, Samuel; Boisson-Dernier, Aurélien; Roschitzki, Bernd; Nanni, Paolo; Nühse, Thomas; Grossniklaus, Ueli (2012). Characterization of the phosphoproteome of mature Arabidopsis pollen. The Plant Journal, 72(1):89-101.
  • Schneider, Thomas; Keiblinger, Katharina M; Schmid, Emanuel; Sterflinger-Gleixner, Katja; Ellersdorfer, Günther; Roschitzki, Bernd; Richter, Andreas; Eberl, Leo; Zechmeister-Boltenstern, Sophie; Riedel, Kathrin (2012). Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions. The ISME journal, 6(9):1749-1762.
  • Meyer, Andrea; Megerle, Judith A; Kuttler, Christina; Müller, Johannes; Aguilar, Claudio; Eberl, Leo; Hense, Burkhard A; Rädler, Joachim O (2012). Dynamics of AHL mediated quorum sensing under flow and non-flow conditions. Physical Biology, 9(2):026007.
  • Simanski, Maren; Babucke, Sarah; Eberl, Leo; Harder, Jürgen (2012). Paraoxonase 2 acts as a quorum sensing-quenching factor in human keratinocytes. Journal of Investigative Dermatology, 132(9):2296-2299.
  • Lorè, Nicola Ivan; Cigana, Cristina; De Fino, Ida; Riva, Camilla; Juhas, Mario; Schwager, Stephan; Eberl, Leo; Bragonzi, Alessandra (2012). Cystic fibrosis-niche adaptation of Pseudomonas aeruginosa reduces virulence in multiple infection hosts. PLoS ONE, 7(4):e35648.
  • Inhülsen, Silja; Aguilar, Claudio; Schmid, Nadine; Suppiger, Angela; Riedel, Kathrin; Eberl, Leo (2012). Identification of functions linking quorum sensing with biofilm formation inBurkholderia cenocepaciaH111. MicrobiologyOpen, 1(2):225-242.
  • Keiblinger, Katharina M; Wilhartitz, Inés C; Schneider, Thomas; Roschitzki, Bernd; Schmid, Emanuel; Eberl, Leo; Riedel, Kathrin; Zechmeister-Boltenstern, Sophie (2012). Soil metaproteomics – Comparative evaluation of protein extraction protocols. Soil Biology and Biochemistry, 54(15-10):14-24.
  • Keiblinger, K M; Schneider, T; Roschitzki, B; Schmid, E; Eberl, L; Hämmerle, I; Leitner, S; Richter, A; Wanek, W; Riedel, K; Zechmeister-Boltenstern, S (2012). Effects of stoichiometry and temperature perturbations on beech leaf litter decomposition, enzyme activities and protein expression. Biogeosciences, 9(11):4537-4551.
  • Deng, Y; Schmid, N; Wang, C; Wang, J; Pessi, G; Wu, D; Lee, J; Aguilar, C; Ahrens, C H; Chang, C; Song, H; Eberl, L; Zhang, L H (2012). Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover. Proceedings of the National Academy of Sciences of the United States of America, 109(38):15479-15484.
  • Toyofuku, Masanori; Roschitzki, Bernd; Riedel, Katharina; Eberl, Leo (2012). Identification of proteins associated with the Pseudomonas aeruginosa biofilm extracellular matrix. Journal of Proteome Research, 11(10):4906-4915.
  • Juhas, Mario; Eberl, Leo; Church, George M (2012). Essential genes as antimicrobial targets and cornerstones of synthetic biology. Trends in Biotechnology, 30(11):601-607.
  • Schwager, Stephan; Lumjiaktase, Putthapoom; Stöckli, Martina; Weisskopf, Laure; Eberl, Leo (2012). The genetic basis of cadmium resistance of Burkholderia cenocepacia. Environmental Microbiology Reports, 4(5):562-568.
  • Schmid, Nadine; Pessi, Gabriella; Deng, Yinyue; Aguilar, Claudio; Carlier, Aurelien L; Grunau, Alexander; Omasits, Ulrich; Zhang, Lian-Hui; Ahrens, Christian H; Eberl, Leo (2012). The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111. PLoS ONE, 7(11):e49966.
  • Klockgether, Jens; Miethke, Norbert; Kubesch, Peter; Bohn, Yu-Sing; Brockhausen, Inka; Cramer, Nina; Eberl, Leo; Greipel, Joachim; Herrmann, Christian; Herrmann, Susanne; Horatzek, Sonja; Lingner, Meike; Luciano, Liliana; Salunkhe, Prabhakar; Schomburg, Dietmar; Wehsling, Maria; Wiehlmann, Lutz; Davenport, Colin F; Tümmler, Burkhard (2012). Intraclonal diversity of the Pseudomonas aeruginosa cystic fibrosis airway isolates TBCF10839 and TBCF121838: distinct signatures of transcriptome, proteome, metabolome, adherence and pathogenicity despite an almost identical genome sequence. Environmental Microbiology, 15(1):191-210.
  • Archer, Crystal R; Groll, Michael; Stein, Martin L; Schellenberg, Barbara; Clerc, Jérôme; Kaiser, Markus; Kondratyuk, Tamara P; Pezzuto, John M; Dudler, Robert; Bachmann, André S (2012). Activity enhancement of the synthetic syrbactin proteasome inhibitor hybrid and biological evaluation in tumor cells. Biochemistry, 51(34):6880-6888.
  • Stein, M L; Beck, P; Kaiser, M; Dudler, R; Becker, C F W; Groll, M (2012). One-shot NMR analysis of microbial secretions identifies highly potent proteasome inhibitor. Proceedings of the National Academy of Sciences, 109(45):18367-18371.
  • Züst, Tobias; Heichinger, Christian; Grossniklaus, Ueli; Harrington, Richard; Kliebenstein, Daniel J; Turnbull, Lindsay A (2012). Natural enemies drive geographic variation in plant defenses. Science, 338(6103):116-119.
  • Bemer, Marian; Grossniklaus, Ueli (2012). Dynamic regulation of Polycomb group activity during plant development. Current Opinion in Plant Biology, 15(5):523-529.
  • Lindner, Heike; Raissig, Michael T; Sailer, Christian; Shimosato-Asano, Hiroko; Bruggmann, Rémy; Grossniklaus, Ueli (2012). SNP-Ratio Mapping (SRM): identifying lethal alleles and mutations in complex genetic backgrounds by next-generation sequencing. Genetics, 191(4):1381-1386.
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