Publications IPMB

ZORA Publication List

Publications

• 2012

  • Blom, J F. Chemical interactions between aquatic microorganisms. 2012, University of Zurich, Faculty of Science.
  • Win, J; Chaparro-Garcia, A; Belhaj, K; Saunders, D G O; Yoshida, K; Dong, S; Schornack, S; Zipfel, Cyril; Robatzek, S; Hogenhout, S A; Kamoun, Sophien (2012). Effector Biology of Plant-Associated Organisms: Concepts and Perspectives. Cold Spring Harbor Symposia on Quantitative Biology, 77:235-247.
  • Simonini, Sara; Roig-Villanova, Irma; Gregis, Veronica; Colombo, Bilitis; Colombo, Lucia; Kater, Martin M (2012). Basic pentacysteine proteins mediate MADS domain complex binding to the DNA for tissue-specific expression of target genes in Arabidopsis. Plant Cell, 24(10):4163-4172.
  • Storari, Michelangelo; Bigler, Laurent; Gessler, Cesare; Broggini, Giovanni A L (2012). Assessment of the ochratoxin A production ability of Aspergillus tubingensis. Food Additives & Contaminants. Part A, Chemistry, Analysis, Control, Exposure & Risk Assessment, 29(9):1450-1454.
  • Wöhrmann, Heike J P; Gagliardini, Valeria; Raissig, Michael T; Wehrle, Wendelin; Arand, Julia; Schmidt, Anja; Tierling, Sascha; Page, Damian R; Schöb, Hanspeter; Walter, Jörn; Grossniklaus, Ueli (2012). Identification of a DNA methylation-independent imprinting control region at the Arabidopsis MEDEA locus. Genes and Development, 26(16):1837-1850.
  • D'Hont, Angélique; Denoeud, France; Aury, Jean-Marc; Baurens, Franc-Christophe; Carreel, Françoise; Garsmeur, Olivier; Noel, Benjamin; Bocs, Stéphanie; Droc, Gaëtan; Rouard, Mathieu; Da Silva, Corinne; Jabbari, Kamel; Cardi, Céline; Poulain, Julie; Souquet, Marlène; Labadie, Karine; Jourda, Cyril; Lengellé, Juliette; Rodier-Goud, Marguerite; Alberti, Adriana; Bernard, Maria; Correa, Margot; Ayyampalayam, Saravanaraj; Mckain, Michael R; Leebens-Mack, Jim; Burgess, Diane; Freeling, Mike; Mbéguié-A-Mbéguié, Didier; Chabannes, Matthieu; Wicker, Thomas; Panaud, Olivier; Barbosa, Jose; Hribova, Eva; Heslop-Harrison, Pat; Habas, Rémy; Rivallan, Ronan; Francois, Philippe; Poiron, Claire; Kilian, Andrzej; Burthia, Dheema; Jenny, Christophe; Bakry, Frédéric; Brown, Spencer; Guignon, Valentin; Kema, Gert; Dita, Miguel; Waalwijk, Cees; Joseph, Steeve; Dievart, Anne; Jaillon, Olivier; Leclercq, Julie; Argout, Xavier; Lyons, Eric; Almeida, Ana; Jeridi, Mouna; Dolezel, Jaroslav; Roux, Nicolas; Risterucci, Ange-Marie; Weissenbach, Jean; Ruiz, Manuel; Glaszmann, Jean-Christophe; Quétier, Francis; Yahiaoui, Nabila; Wincker, Patrick (2012). The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature, 488(7410):213-217.
  • Bourras, S; Meyer, M; Grandaubert, J; Lapalu, N; Fudal, I; Linglin, J; Ollivier, B; Blaise, F; Balesdent, M-H; Rouxel, T (2012). Incidence of Genome Structure, DNA Asymmetry, and Cell Physiology on T-DNA Integration in Chromosomes of the Phytopathogenic Fungus Leptosphaeria maculans. G3 : Genes, Genomes, Genetics, 2(8):891-904.
  • Monaghan, Jacqueline; Zipfel, Cyril (2012). Plant pattern recognition receptor complexes at the plasma membrane. Current Opinion in Plant Biology, 15(4):349-357.
  • Macho, Alberto P; Boutrot, Freddy; Rathjen, John P; Zipfel, Cyril (2012). Aspartate Oxidase Plays an Important Role in Arabidopsis Stomatal Immunity. Plant Physiology, 159(4):1845-1856.
  • Segonzac, Cécile; Nimchuk, Zachary L; Beck, Martina; Tarr, Paul T; Robatzek, Silke; Meyerowitz, Elliot M; Zipfel, Cyril (2012). The Shoot Apical Meristem Regulatory Peptide CLV3 Does Not Activate Innate Immunity. Plant Cell, 24(8):3186-3192.
  • Ramel, Christina; Baechler, Nando; Hildbrand, Michel; Meyer, Martin; Schädeli, David; Dudler, Robert (2012). Regulation of biosynthesis of syringolin a, a pseudomonas syringae virulence factor targeting the host proteasome. Molecular Plant-Microbe Interactions, 25(9):1198-1208.
  • Bencivenga, Stefano; Simonini, Sara; Benková, Eva; Colombo, Lucia (2012). The transcription factors BEL1 and SPL are required for cytokinin and auxin signaling during ovule development in Arabidopsis. Plant Cell, 24(7):2886-2897.
  • Dumas, Zoe; Kümmerli, Rolf (2012). Cost of cooperation rules selection for cheats in bacterial metapopulations. Journal of Evolutionary Biology, 25(3):473-484.
  • Jakobsen, Tim Holm; van Gennip, Maria; Phipps, Richard Kerry; Shanmugham, Meenakshi Sundaram; Christensen, Louise Dahl; Alhede, Morten; Skindersoe, Mette Eline; Rasmussen, Thomas Bovbjerg; Friedrich, Karlheinz; Uthe, Friedrich; Jensen, Peter Østrup; Moser, Claus; Nielsen, Kristian Fog; Eberl, Leo; Larsen, Thomas Ostenfeld; Tanner, David; Høiby, Niels; Bjarnsholt, Thomas; Givskov, Michael (2012). Ajoene, a sulfur rich molecule from garlic, inhibits genes controlled by quorum sensing. Antimicrobial Agents and Chemotherapy, 56(5):2314-2325.
  • Roux, Milena; Zipfel, Cyril (2012). Receptor Kinase Interactions: Complexity of Signalling. In: Tax, Frans; Kemmerling, Birgit. Receptor-like kinases in plants : from development to defense. Berlin: Springer, 145-172.
  • Posch, Thomas; Köster, Oliver; Salcher, Michaela M; Pernthaler, Jakob (2012). Harmful filamentous cyanobacteria favoured by reduced water turnover with lake warming. Nature Climate Change, 2(11):809-813.
  • Horňák, Karel; Corno, Gianluca (2012). Every coin has a back side: invasion by limnohabitans planktonicus promotes the maintenance of species diversity in bacterial communities. PLoS ONE, 7(12):e51576.
  • Buchmann, Jan P; Matsumoto, Takashi; Stein, Nils; Keller, Beat; Wicker, Thomas (2012). Inter-species sequence comparison of Brachypodium reveals how transposon activity corrodes genome colinearity. The Plant Journal, 71(4):550-563.
  • Martis, M M; Klemme, S; Banaei-Moghaddam, A M; Blattner, F R; Macas, J; Schmutzer, T; Scholz, Uwe; Gundlach, H; Wicker, T; Simkova, H; Novak, P; Neumann, P; Kubalakova, M; Bauer, E; Haseneyer, G; Fuchs, J; Dolezel, J; Stein, N; Mayer, K F X; Houben, A (2012). Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proceedings of the National Academy of Sciences of the United States of America, 109(33):13343-13346.
  • Khurana, Neetika; Chauhan, Harsh; Khurana, Paramjit (2012). Expression analysis of a heat-inducible, Myo-inositol-1-phosphate synthase (MIPS) gene from wheat and the alternatively spliced variants of rice and Arabidopsis. Plant Cell Reports, 31(1):237-251.
  • Chauhan, Harsh; Khurana, Neetika; Nijhavan, Aashima; Khurana, Jitendra p; Khurana, Paramjit (2012). The wheat chloroplastic small heat shock protein (sHSP26) is involved in seed maturation and germination and imparts tolerance to heat stress. Plant, cell & environment, 35(11):1912-1931.
  • Saharan, M S; Tiwari, R; Krattinger, S G; Keller, B; Priyamvada, A (2012). Mapping of Indian bread wheat population, HS 2189 x Agra Local for adult plant leaf rust resistance, Lr34. Indian Phytopathology, 65:128-132.
  • Manickavelu, A; Kawaura, K; Oishi, K; Shin-I, T; Kohara, Y; Yahiaoui, N; Keller, B; Abe, R; Suzuki, A; Nagayama, T; Yano, K; Ogihara, Y (2012). Comprehensive functional analyses of expressed sequence tags in common wheat (triticum aestivum). DNA Research, 19(2):165-177.
  • Keller, B (2012). Erfahrungen mit den Feldversuchen im Rahmen des NFP59. In: Nutzen und Risiken der Freisetzung gentechnisch veränderter Pflanzen. In: NFP. Nutzen und Risiken der Freisetzung gentechnisch veränderter Pflanzen. Zürich, CH: Vdf Hochschulverlag AG, ETH Zürich, 226-237.
  • Mascher, F; Matasci, C; Kneubuehler, Y; Kellenberger, S; Diaz Quijano, C; Keller, B; Sautter, C; Schori, A (2012). Die Resistenz transgener Weizenlinien gegen Pilzkrankheiten im Feldversuch. Agrarforschung Schweiz, 3(6):298-305.
  • Ringli, Christoph; Kuhn, Benjamin M; Bigler, Laurent (2012). Cell Growth Processes in Arabidopsis thaliana are Modified by Flavonols. CHIMIA International Journal for Chemistry, 66(9):714.
  • Njau, P N; Bhavani, S; Huerta-Espino, J; Keller, B; Singh, R P (2012). Identification of QTL associated with durable adult plant resistance to stem rust Ug99 in wheat cultivar 'Pavon 76'. Euphytica:online.
  • Jacquat, C (2012). Andermatt / Golf (canton d’Uri, Suisse). Analyses carpologiques. Aarau, Switzerland: Prospect GmbH.
  • Schwager, S. The use of non-mammalian infection models to study the pathogenicity of Pseudomonas aeruginosa and members of the genus Burkholderia. 2012, University of Zurich, Faculty of Science.
  • Ramel, C F. Syringolin A: Biosynthesis, Regulation and Effects in Plants. 2012, University of Zurich, Faculty of Science.
  • John, F. The TOR pathway, a central relay linking cell growth and cell wall dynamics in Arabidopsis thaliana. 2012, University of Zurich, Faculty of Science.
  • Buchmann, J P. Analysis of DNA-transposons in the genome of Brachypodium distachyon reveals mechanisms for intergenic sequence turnover. 2012, University of Zurich, Faculty of Science.
  • Jaciubek, M. Attempts to engineer parthenogenesis in Arabidopsis thaliana. 2012, University of Zurich, Faculty of Science.
  • Draeger, Christian. A genetic, biochemical, and biomechanical study of plant cell wall dynamics in pollen tubes. 2012, University of Zurich, Faculty of Science.
  • Burla, Bo Johannes. Evolutionary analysis of abcc transporters and characterization of vacuolar transport mechanisms of the glucosylated phytohormone absicisic acid. 2012, University of Zurich, Faculty of Science.
  • Castella, Daniel; Buard, Jean-Francois; David-Elbiali, Mireille; Jacquat, Christiane; Northover, Peter J; Olive, Claude (2012). L’habitat de l’âge du Bronze moyen de Payerne «En Planeise» (canton de Vaud, Suisse). Lausanne: Cahiers d'archéologie romande.
  • Distefano, Gaetano; Hedhly, Afif; Las Casas, Giuseppina; La Malfa, Stefano; Herrero, Maria; Gentile, Alessandra (2012). Male–female interaction and temperature variation affect pollen performance in Citrus. Scientia Horticulturae, 140(1):1-7.
  • Pattanayak, Gopal K; Venkataramani, Sujatha; Hortensteiner, Stefan; Kunz, Lukas; Christ, Bastien; Moulin, Michael; Smith, Alison G; Okamoto, Yukihiro; Tamiaki, Hitoshi; Sugishima, Masakazu; Greenberg, Jean T (2012). Accelerated cell death 2 suppresses mitochondrial oxidative bursts and modulates cell death in Arabidopsis. The Plant Journal, 69(4):589-600.
  • Christ, Bastien; Schelbert, Silvia; Aubry, Sylvain; Süssenbacher, Iris; Müller, Thomas; Kräutler, Bernhard; Hörtensteiner, Stefan (2012). MES16, a member of the methylesterase protein family, specifically demethylates fluorescent chlorophyll catabolites during chlorophyll breakdown in Arabidopsis. Plant physiology, 158(2):628-641.
  • Sakuraba, Yasuhito; Schelbert, Silvia; Park, So-Yon; Han, Su-Hyun; Lee, Byoung-Doo; Andrès, Céline Besagni; Kessler, Felix; Hörtensteiner, Stefan; Paek, Nam-Chon (2012). STAY-GREEN and chlorophyll catabolic enzymes interact at light-harvesting complex II for chlorophyll detoxification during leaf senescence in Arabidopsis. Plant Cell, 24(2):507-518.
  • Grassl, Julia; Pružinská, Adriana; Hörtensteiner, Stefan; Taylor, Nicolas L; Millar, A Harvey (2012). Early events in plastid protein degradation in stay-green Arabidopsis reveal differential regulation beyond the retention of LHCII and chlorophyll. Journal of Proteome Research, 11(11):5443-5452.
  • Martinoia, Enrico; Meyer, Stefan; De Angeli, Alexis; Nagy, Réka (2012). Vacuolar transporters in their physiological context. Annual Review of Plant Biology, 63:183-213.
  • Park, Jiyoung; Song, Won-Yong; Ko, Donghwi; Eom, Yujin; Hansen, Thomas H; Schiller, Michaela; Lee, Tai Gyu; Martinoia, Enrico; Lee, Youngsook (2012). The phytochelatin transporters AtABCC1 and AtABCC2 mediate tolerance to cadmium and mercury. The Plant Journal, 69(2):278-288.
  • Schulze, Waltraud X; Schneider, Thomas; Starck, Sabrina; Martinoia, Enrico; Trentmann, Oliver (2012). Cold acclimation induces changes in Arabidopsis tonoplast protein abundance and activity and alters phosphorylation of tonoplast monosaccharide transporters. The Plant Journal, 69(3):529-541.
  • Kretzschmar, Tobias; Kohlen, Wouter; Sasse, Joelle; Borghi, Lorenzo; Schlegel, Markus; Bachelier, Julien B; Reinhardt, Didier; Bours, Ralph; Bouwmeester, Harro J; Martinoia, Enrico (2012). A petunia ABC protein controls strigolactone-dependent symbiotic signalling and branching. Nature, 483(7389):341-344.
  • Rienmüller, Florian; Dreyer, Ingo; Schönknecht, Gerald; Schulz, Alexander; Schumacher, Karin; Nagy, Réka; Martinoia, Enrico; Marten, Irene; Hedrich, Rainer (2012). Luminal and cytosolic pH feedback on proton pump activity and ATP affinity of V-type ATPase from Arabidopsis. Journal of Biological Chemistry, 287(12):8986-8993.
  • Alejandro, Santiago; Lee, Yuree; Tohge, Takayuki; Sudre, Damien; Osorio, Sonia; Park, Jiyoung; Bovet, Lucien; Lee, Youngsook; Geldner, Niko; Fernie, Alisdair R; Martinoia, Enrico (2012). AtABCG29 is a monolignol transporter involved in lignin biosynthesis. Current Biology, 22(13):1207-1212.
  • Badri, Dayakar V; Chaparro, Jacqueline M; Manter, Daniel K; Martinoia, Enrico; Vivanco, Jorge M (2012). Influence of ATP-binding cassette transporters in root exudation of phytoalexins, signals, and in disease resistance. Frontiers in Plant Science:3:149.
  • Hassler, Sebastian; Lemke, Lilia; Jung, Benjamin; Möhlmann, Torsten; Krüger, Falco; Schumacher, Karin; Espen, Luca; Martinoia, Enrico; Neuhaus, H Ekkehard (2012). Lack of the Golgi phosphate transporter PHT4;6 causes strong developmental defects, constitutively activated disease resistance mechanisms and altered intracellular phosphate compartmentation in Arabidopsis. The Plant Journal, 72(5):732-744.
  • Schmid, Marc W; Schmidt, Anja; Klostermeier, Ulrich C; Barann, Matthias; Rosenstiel, Philip; Grossniklaus, Ueli (2012). A powerful method for transcriptional profiling of specific cell types in eukaryotes: laser-assisted microdissection and RNA sequencing. PLoS ONE, 7(1):e29685.
  • Petricka, Jalean J; Schauer, Monica A; Megraw, Molly; Breakfield, Natalie W; Thompson, J Will; Georgiev, Stoyan; Soderblom, Erik J; Ohler, Uwe; Moseley, Martin Arthur; Grossniklaus, Ueli; Benfey, Philip N (2012). The protein expression landscape of the Arabidopsis root. Proceedings of the National Academy of Sciences of the United States of America, 109(18):6811-6818.
  • Schmidt, Anja; Schmid, Marc W; Grossniklaus, Ueli (2012). Analysis of plant germline development by high-throughput RNA profiling: technical advances and new insights. The Plant Journal, 70(1):18-29.
  • You, Wanhui; Tyczewska, Agata; Spencer, Matthew; Daxinger, Lucia; Schmid, Marc W; Grossniklaus, Ueli; Simon, Stacey A; Meyers, Blake C; Matzke, Antonius J M; Matzke, Marjori (2012). Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana. BMC Plant Biology, 12:51.
  • Marshall, Alex; Aalen, Reidunn B; Audenaert, Dominique; Beeckman, Tom; Broadley, Martin R; Butenko, Melinka A; Caño-Delgado, Ana I; de Vries, Sacco; Dresselhaus, Thomas; Felix, Georg; Graham, Neil S; Foulkes, John; Granier, Christine; Greb, Thomas; Grossniklaus, Ueli; Hammond, John P; Heidstra, Renze; Hodgman, Charlie; Hothorn, Michael; Inzé, Dirk; Ostergaard, Lars; Russinova, Eugenia; Simon, Rüdiger; Skirycz, Aleksandra; Stahl, Yvonne; Zipfel, Cyril; De Smet, Ive (2012). Tackling drought stress: receptor-like kinases present new approaches. Plant Cell, 24(6):2262-2278.
  • Leshem, Yehoram; Johnson, Cameron; Wuest, Samuel E; Song, Xiaoya; Ngo, Quy A; Grossniklaus, Ueli; Sundaresan, Venkatesan (2012). Molecular characterization of the glauce mutant: a central cell-specific function is required for double fertilization in Arabidopsis. Plant Cell, 24(8):3264-3277.
  • Lindner, Heike; Müller, Lena Maria; Boisson-Dernier, Aurélien; Grossniklaus, Ueli (2012). CrRLK1L receptor-like kinases: not just another brick in the wall. Current Opinion in Plant Biology, 15(6):659-669.
  • Pires, Nuno D; Grossniklaus, Ueli (2012). How to fine-tune an epigenetic switch. Developmental Cell, 23(3):453-454.
  • Kritsas, Konstantinos; Wuest, Samuel E; Hupalo, Daniel; Kern, Andrew D; Wicker, Thomas; Grossniklaus, Ueli (2012). Computational analysis and characterization of UCE-like elements (ULEs) in plant genomes. Genome Research, 22(12):2455-2466.
  • Ngo, Quy A; Baroux, Celia; Guthörl, Daniela; Mozerov, Peter; Collinge, Margaret A; Sundaresan, Venkatesan; Grossniklaus, Ueli (2012). The Armadillo repeat gene ZAK IXIK promotes Arabidopsis early embryo and endosperm development through a distinctive gametophytic maternal effect. Plant Cell, 24(10):4026-4043.
  • Iwano, Megumi; Ngo, Quy A; Entani, Tetsuyuki; Shiba, Hiroshi; Nagai, Takeharu; Miyawaki, Atsushi; Isogai, Akira; Grossniklaus, Ueli; Takayama, Seiji (2012). Cytoplasmic Ca2+ changes dynamically during the interaction of the pollen tube with synergid cells. Development, 139(22):4202-4209.
  • Sprunck, Stefanie; Rademacher, Svenja; Vogler, Frank; Gheyselinck, Jacqueline; Grossniklaus, Ueli; Dresselhaus, Thomas (2012). Egg cell-secreted EC1 triggers sperm cell activation during double fertilization. Science, 338(6110):1093-1097.
  • Lenton, Timothy M; Crouch, Michael; Johnson, Martin; Pires, Nuno; Dolan, Liam (2012). First plants cooled the Ordovician. Nature Geoscience, 5(2):86-89.
  • Pires, Nuno D; Dolan, Liam (2012). Morphological evolution in land plants: new designs with old genes. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 367(1588):508-518.
  • Xu, Meimei; Galhano, Rita; Wiemann, Philipp; Bueno, Emilio; Tiernan, Mollie; Wu, William; Chung, Ill-Min; Gershenzon, Jonathan; Tudzynski, Bettina; Sesma, Ane; Peters, Reuben J (2012). Genetic evidence for natural product-mediated plant-plant allelopathy in rice (Oryza sativa). New Phytologist, 193(3):570-575.
  • Ibarra, Christian A; Feng, Xiaoqi; Schoft, Vera K; Hsieh, Tzung-Fu; Uzawa, Rie; Rodrigues, Jessica A; Zemach, Assaf; Chumak, Nina; Machlicova, Adriana; Nishimura, Toshiro; Rojas, Denisse; Fischer, Robert L; Tamaru, Hisashi; Zilberman, Daniel (2012). Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science, 337(6100):1360-1364.
  • Hwang, Ildoo; Sheen, Jen; Müller, Bruno (2012). Cytokinin signaling networks. Annual Review of Plant Biology, 63:353-380.
  • Gerber, Simon D; Amann, Ruth; Wyder, Stefan; Trueb, Beat (2012). Comparison of the gene expression profiles from normal and Fgfrl1 deficient mouse kidneys reveals downstream targets of Fgfrl1 signaling. PLoS ONE, 7(3):e33457.
  • Honegger, R (2012). The symbiotic phenotype of lichen-forming ascomycetes and their endo- and epibionts. In: Hock, Bertold. Fungal Associations. Berlin, Heidelberg: Springer, 287-339.
  • Honegger, R (2012). In Memoriam. Nicolaas Christianus Johannes (Nico) Duijvestijn (1941-2012). Briefe aus dem Botanischen Garten Zürich:1.
  • Honegger, R (2012). Zauberhafte Zitrusfrüchte (Citrus-Arten). Briefe aus dem Botanischen Garten Zürich, 46(1):1-2.
  • Honegger, R (2012). Faszinierendes Reich der Pilze. Weder Tier noch Pflanze. 4 bis 8: Fachzeitschrift für Kindergarten und Unterstufe, (6):16-19.
  • Honegger, R (2012). Aino Marjatta Henssen (1925–2011). Bryologist, 115(2):350-353.
  • Honegger, Rosmarie (2012). Differential gene expression within the cyanobacterial cell population of a lichen thallus. New Phytologist, 196(3):657-660.
  • Bemer, Marian; Karlova, Rumyana; Ballester, Ana Rosa; Tikunov, Yury M; et al (2012). The tomato FRUITFULL homologs TDR4/FUL1 and MBP7/FUL2 regulate ethylene-independent aspects of fruit ripening. Plant Cell, 24(11):4437-4451.
  • Neumann, Frank R; Dion, Vincent; Gehlen, Lutz R; Tsai-Pflugfelder, Monika; Schmid, Roger; Taddei, Angela; Gasser, Susan M (2012). Targeted INO80 enhances subnuclear chromatin movement and ectopic homologous recombination. Genes and Development, 26(4):369-383.
  • Mayank, Pururawa; Grossman, Jonas; Wuest, Samuel; Boisson-Dernier, Aurélien; Roschitzki, Bernd; Nanni, Paolo; Nühse, Thomas; Grossniklaus, Ueli (2012). Characterization of the phosphoproteome of mature Arabidopsis pollen. The Plant Journal, 72(1):89-101.
  • Schneider, Thomas; Keiblinger, Katharina M; Schmid, Emanuel; Sterflinger-Gleixner, Katja; Ellersdorfer, Günther; Roschitzki, Bernd; Richter, Andreas; Eberl, Leo; Zechmeister-Boltenstern, Sophie; Riedel, Kathrin (2012). Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions. The ISME journal, 6(9):1749-1762.
  • Meyer, Andrea; Megerle, Judith A; Kuttler, Christina; Müller, Johannes; Aguilar, Claudio; Eberl, Leo; Hense, Burkhard A; Rädler, Joachim O (2012). Dynamics of AHL mediated quorum sensing under flow and non-flow conditions. Physical Biology, 9(2):026007.
  • Simanski, Maren; Babucke, Sarah; Eberl, Leo; Harder, Jürgen (2012). Paraoxonase 2 acts as a quorum sensing-quenching factor in human keratinocytes. Journal of Investigative Dermatology, 132(9):2296-2299.
  • Lorè, Nicola Ivan; Cigana, Cristina; De Fino, Ida; Riva, Camilla; Juhas, Mario; Schwager, Stephan; Eberl, Leo; Bragonzi, Alessandra (2012). Cystic fibrosis-niche adaptation of Pseudomonas aeruginosa reduces virulence in multiple infection hosts. PLoS ONE, 7(4):e35648.
  • Inhülsen, Silja; Aguilar, Claudio; Schmid, Nadine; Suppiger, Angela; Riedel, Kathrin; Eberl, Leo (2012). Identification of functions linking quorum sensing with biofilm formation inBurkholderia cenocepaciaH111. MicrobiologyOpen, 1(2):225-242.
  • Keiblinger, Katharina M; Wilhartitz, Inés C; Schneider, Thomas; Roschitzki, Bernd; Schmid, Emanuel; Eberl, Leo; Riedel, Kathrin; Zechmeister-Boltenstern, Sophie (2012). Soil metaproteomics – Comparative evaluation of protein extraction protocols. Soil Biology and Biochemistry, 54(15-10):14-24.
  • Keiblinger, K M; Schneider, T; Roschitzki, B; Schmid, E; Eberl, L; Hämmerle, I; Leitner, S; Richter, A; Wanek, W; Riedel, K; Zechmeister-Boltenstern, S (2012). Effects of stoichiometry and temperature perturbations on beech leaf litter decomposition, enzyme activities and protein expression. Biogeosciences, 9(11):4537-4551.
  • Deng, Y; Schmid, N; Wang, C; Wang, J; Pessi, G; Wu, D; Lee, J; Aguilar, C; Ahrens, C H; Chang, C; Song, H; Eberl, L; Zhang, L H (2012). Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover. Proceedings of the National Academy of Sciences of the United States of America, 109(38):15479-15484.
  • Toyofuku, Masanori; Roschitzki, Bernd; Riedel, Katharina; Eberl, Leo (2012). Identification of proteins associated with the Pseudomonas aeruginosa biofilm extracellular matrix. Journal of Proteome Research, 11(10):4906-4915.
  • Juhas, Mario; Eberl, Leo; Church, George M (2012). Essential genes as antimicrobial targets and cornerstones of synthetic biology. Trends in Biotechnology, 30(11):601-607.
  • Schwager, Stephan; Lumjiaktase, Putthapoom; Stöckli, Martina; Weisskopf, Laure; Eberl, Leo (2012). The genetic basis of cadmium resistance of Burkholderia cenocepacia. Environmental Microbiology Reports, 4(5):562-568.
  • Schmid, Nadine; Pessi, Gabriella; Deng, Yinyue; Aguilar, Claudio; Carlier, Aurelien L; Grunau, Alexander; Omasits, Ulrich; Zhang, Lian-Hui; Ahrens, Christian H; Eberl, Leo (2012). The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111. PLoS ONE, 7(11):e49966.
  • Klockgether, Jens; Miethke, Norbert; Kubesch, Peter; Bohn, Yu-Sing; Brockhausen, Inka; Cramer, Nina; Eberl, Leo; Greipel, Joachim; Herrmann, Christian; Herrmann, Susanne; Horatzek, Sonja; Lingner, Meike; Luciano, Liliana; Salunkhe, Prabhakar; Schomburg, Dietmar; Wehsling, Maria; Wiehlmann, Lutz; Davenport, Colin F; Tümmler, Burkhard (2012). Intraclonal diversity of the Pseudomonas aeruginosa cystic fibrosis airway isolates TBCF10839 and TBCF121838: distinct signatures of transcriptome, proteome, metabolome, adherence and pathogenicity despite an almost identical genome sequence. Environmental Microbiology, 15(1):191-210.
  • Archer, Crystal R; Groll, Michael; Stein, Martin L; Schellenberg, Barbara; Clerc, Jérôme; Kaiser, Markus; Kondratyuk, Tamara P; Pezzuto, John M; Dudler, Robert; Bachmann, André S (2012). Activity enhancement of the synthetic syrbactin proteasome inhibitor hybrid and biological evaluation in tumor cells. Biochemistry, 51(34):6880-6888.
  • Stein, M L; Beck, P; Kaiser, M; Dudler, R; Becker, C F W; Groll, M (2012). One-shot NMR analysis of microbial secretions identifies highly potent proteasome inhibitor. Proceedings of the National Academy of Sciences, 109(45):18367-18371.
  • Züst, Tobias; Heichinger, Christian; Grossniklaus, Ueli; Harrington, Richard; Kliebenstein, Daniel J; Turnbull, Lindsay A (2012). Natural enemies drive geographic variation in plant defenses. Science, 338(6103):116-119.
  • Bemer, Marian; Grossniklaus, Ueli (2012). Dynamic regulation of Polycomb group activity during plant development. Current Opinion in Plant Biology, 15(5):523-529.
  • Lindner, Heike; Raissig, Michael T; Sailer, Christian; Shimosato-Asano, Hiroko; Bruggmann, Rémy; Grossniklaus, Ueli (2012). SNP-Ratio Mapping (SRM): identifying lethal alleles and mutations in complex genetic backgrounds by next-generation sequencing. Genetics, 191(4):1381-1386.
  • Risk, Joanna M; Selter, Liselotte L; Krattinger, Simon G; Viccars, Libby A; Richardson, Terese M; Buesing, Gabriele; Herren, Gerhard; Lagudah, Evans S; Keller, Beat (2012). Functional variability of the Lr34 durable resistance gene in transgenic wheat. Plant Biotechnology Journal, 10(4):477-487.
  • Xu, Shuqing; Schlüter, Philipp M; Grossniklaus, Ueli; Schiestl, Florian P (2012). The genetic basis of pollinator adaptation in a sexually deceptive orchid. PLoS Genetics, 8(8):e1002889.
  • Juhas, Mario; Stark, Manuel; von Mering, Christian; Lumjiaktase, Puthapoom; Crook, Derrick W; Valvano, Miguel A; Eberl, Leo (2012). High confidence prediction of essential genes in burkholderia cenocepacia. PLoS ONE, 7(6):e40064.
  • Tsuchimatsu, Takashi; Kaiser, Pascal; Yew, Chow-Lih; Bachelier, Julien B; Shimizu, Kentaro K (2012). Recent loss of self-incompatibility by degradation of the male component in allotetraploid Arabidopsis kamchatica. PLoS Genetics, 8(7):e1002838.
  • Carlier, Aurelien L; Eberl, Leo (2012). The eroded genome of a Psychotria leaf symbiont: hypotheses about lifestyle and interactions with its plant host. Environmental Microbiology, 14(10):2757-2769.
  • Xu, Shuqing; Schlüter, Philipp M; Schiestl, Florian P (2012). Pollinator-driven speciation in sexually deceptive Orchids. International Journal of Ecology, 2012:285081.
  • Dieckmann, Sarah Maria. Analysis of novel haemotrophic mycoplasma isolates with main focus on significance of haemotrophic mycoplasma infections in horses. 2012, University of Zurich, Faculty of Science.
  • Pessione, Alessandro; Lamberti, Cristina; Cocolin, Luca; Campolongo, Simona; Grunau, Alexander; Giubergia, Sonia; Eberl, Leo; Riedel, Kathrin; Pessione, Enrica (2012). Different protein expression profiles in cheese and clinical isolates of Enterococcus faecalis revealed by proteomic analysis. Proteomics, 12(3):431-447.
  • Agnoli, Kirsty; Schwager, Stephan; Uehlinger, Susanne; Vergunst, Annette; Viteri, Duber F; Nguyen, David T; Sokol, Pamela A; Carlier, Aurélien; Eberl, Leo (2012). Exposing the third chromosome of Burkholderia cepacia complex strains as a virulence plasmid. Molecular Microbiology, 83(2):362-378.
  • Chhuneja, P; Kumar, K; Stirnweis, D; Hurni, S; Keller, B; Dhaliwal, H S; Singh, K (2012). Identification and mapping of two powdery mildew resistance genes in Triticum boeoticum L. Theoretical and Applied Genetics, 124(6):1051-1058.
  • Brunner, S; Stirnweis, D; Diaz Quijano, C; Buesing, G; Herren, G; Parlange, F; Barret, P; Tassy, C; Sautter, C; Winzeler, M; Keller, B (2012). Transgenic Pm3 multilines of wheat show increased powdery mildew resistance in the field. Plant Biotechnology Journal, 10(4):398-409.
  • Miedaner, T; Risser, P; Paillard, S; Schnurbusch, T; Keller, B; Hartl, L; Holzapfel, J; Korzun, V; Ebmeyer, E; Utz, H F (2012). Broad-spectrum resistance loci for three quantitatively inherited diseases in two winter wheat populations. Molecular Breeding, 29(3):731-742.
  • Sela, H; Spiridon, L N; Petrescu, A J; Akerman, M; Mandel-Gutfreund, Y; Nevo, E; Loutre, C; Keller, B; Schulman, A H; Fahima, T (2012). Ancient diversity of splicing motifs and protein surfaces in the wild emmer wheat (Triticum dicoccoides) LR10 coiled coil (CC) and leucine-rich repeat (LRR) domains. Molecular Plant Pathology, 13(3):276-287.

• 2011

  • Rossetti, V; Filippini, M; Svercel, M; Barbour, A D; Bagheri, Homayoun C (2011). Emergent multicellular life cycles in filamentous bacteria owing to density-dependent population dynamics. Journal of the Royal Society Interface, 8(65):1772-1784.
  • Ntoukakis, Vardis; Schwessinger, Benjamin; Segonzac, Cécile; Zipfel, Cyril (2011). Cautionary Notes on the Use of C-Terminal BAK1 Fusion Proteins for Functional Studies. Plant Cell, 23(11):3871-3878.
  • John, F; Roffler, S; Wicker, T; Ringli, C (2011). Plant TOR signaling components. Plant Signaling & Behavior, 6(11):1700-1705.
  • Albrecht, Catherine; Boutrot, Freddy; Segonzac, Cécile; Schwessinger, Benjamin; Gimenez-Ibanez, Selena; Chinchilla, Delphine; Rathjen, John P; de Vries, Sacco C; Zipfel, Cyril (2011). Brassinosteroids inhibit pathogen-associated molecular pattern–triggered immune signaling independent of the receptor kinase BAK1. Proceedings of the National Academy of Sciences of the United States of America, 109(1):303-308.
  • Zeder, M; Kohler, E; Zeder, L; Pernthaler, J (2011). A novel algorithm for the determination of bacterial cell volumes that is unbiased by cell morphology. Microscopy and Microanalysis, 17(5):799-809.
  • Yoshida, Masa-aki; Ishikura, Yukiko; Moritaki, Takeya; Shoguchi, Eiichi; Shimizu, Kentaro K; Sese, Jun; Ogura, Atsushi (2011). Genome structure analysis of molluscs revealed whole genome duplication and lineage specific repeat variation. Gene, 483(1-2):63-71.
  • Piwosz, K; Pernthaler, J (2011). Enrichment of omnivorous cercozoan nanoflagellates from coastal Baltic Sea waters. PLoS ONE, 6(9):e24415.
  • Shimizu, Kentaro K; Kudoh, Hiroshi; Kobayashi, Masaki J (2011). Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology. Annals of Botany, 108(4):777-787.
  • Salcher, M M; Pernthaler, J; Posch, T (2011). Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria 'that rule the waves' (LD12). ISME Journal, 5(8):1242-1252.
  • Mago, R; Tabe, L; McIntosh, R A; Pretorius, Z; Kota, R; Paux, E; Wicker, T; Breen, J; Lagudah, E S; Ellis, J G; Spielmeyer, W (2011). A multiple resistance locus on chromosome arm 3BS in wheat confers resistance to stem rust (Sr2), leaf rust (Lr27) and powdery mildew. Theoretical and Applied Genetics, 123(4):615-623.
  • Kawagoe, Tetsuhiro; Shimizu, Kentaro K; Kakutani, Tetsuji; Kudoh, Hiroshi (2011). Coexistence of trichome variation in a natural plant population: A combined study using ecological and candidate gene approaches. PLoS ONE, 6(7):e22184.
  • Denness, Lucinda; McKenna, Joseph Francis; Segonzac, Cécile; Wormit, Alexandra; Madhou, Priya; Bennett, Mark; Mansfield, John; Zipfel, Cyril; Hamann, Thorsten (2011). Cell Wall Damage-Induced Lignin Biosynthesis Is Regulated by a Reactive Oxygen Species- and Jasmonic Acid-Dependent Process in Arabidopsis. Plant Physiology, 156(3):1364-1374.
  • Schirrmeister, B; Anisimova, M; Antonelli, A; Bagheri, Homayoun C (2011). Evolution of cyanobacterial morphotypes. Communicative & Integrative Biology, 4(4):424-427.
  • Segonzac, Cécile; Feike, Doreen; Gimenez-Ibanez, Selena; Hann, Dagmar R; Zipfel, Cyril; Rathjen, John P (2011). Hierarchy and Roles of Pathogen-Associated Molecular Pattern-Induced Responses in Nicotiana benthamiana. Plant Physiology, 156(2):687-699.
  • Roux, Milena; Schwessinger, Benjamin; Albrecht, Catherine; Chinchilla, Delphine; Jones, Alexandra; Holton, Nick; Malinovsky, Frederikke Gro; Tör, Mahmut; de Vries, Sacco; Zipfel, Cyril (2011). The Arabidopsis Leucine-Rich Repeat Receptor–Like Kinases BAK1/SERK3 and BKK1/SERK4 Are Required for Innate Immunity to Hemibiotrophic and Biotrophic Pathogens. Plant Cell, 23(6):2440-2455.
  • Kuhn, B M; Geisler, M; Bigler, L; Ringli, C (2011). Flavonols accumulate asymmetrically and affect auxin transport in Arabidopsis. Plant Physiology, 156(2):585-595.
  • Schwessinger, Benjamin; Roux, Milena; Kadota, Yasuhiro; Ntoukakis, Vardis; Sklenar, Jan; Jones, Alexandra; Zipfel, Cyril (2011). Phosphorylation-Dependent Differential Regulation of Plant Growth, Cell Death, and Innate Immunity by the Regulatory Receptor-Like Kinase BAK1. PLoS Genetics, 7(4):e1002046.
  • Chauhan, Harsh; Khurana, Paramjit (2011). Use of doubled haploid technology for development of stable drought tolerant bread wheat (Triticum aestivum L.) transgenics. Plant Biotechnology Journal, 9(3):408-417.
  • Liebminger, Eva; Veit, Christiane; Pabst, Martin; Batoux, Martine; Zipfel, Cyril; Altmann, Friedrich; Mach, Lukas; Strasser, Richard (2011). β-N-Acetylhexosaminidases HEXO1 and HEXO3 Are Responsible for the Formation of Paucimannosidic N-Glycans in Arabidopsis thaliana. Journal of Biological Chemistry, 286(12):10793-10802.
  • Segonzac, Cécile; Zipfel, Cyril (2011). Activation of plant pattern-recognition receptors by bacteria. Current Opinion in Microbiology, 14(1):54-61.
  • Krattinger, S G; Lagudah, E S; Wicker, T; Risk, J M; Ashton, A R; Selter, L L; Matsumoto, T; Keller, B (2011). Lr34 multi-pathogen resistance ABC transporter: molecular analysis of homoeologous and orthologous genes in hexaploid wheat and other grass species. The Plant Journal, 65(3):392-403.
  • Chaparro-Garcia, Angela; Wilkinson, Rachael C; Gimenez-Ibanez, Selena; Findlay, Kim; Coffey, Michael D; Zipfel, Cyril; Rathjen, John P; Kamoun, Sophien; Schornack, Sebastian (2011). The Receptor-Like Kinase SERK3/BAK1 Is Required for Basal Resistance against the Late Blight Pathogen Phytophthora infestans in Nicotiana benthamiana. PLoS ONE, 6(1):e16608.
  • Van den Wyngaert, S; Salcher, M M; Pernthaler, J; Posch, T (2011). Quantitative dominance of seasonally persistent filamentous cyanobacteria (Planktothrix rubescens) in the microbial assemblages of a temperate lake. Limnology and Oceanography, 56(1):97-109.
  • Sela, H; Loutre, C; Keller, B; Nevo, E; Korol, A; Fahima, T (2011). Rapid linkage disequilibrium decay in the Lr10 gene in wild emmer wheat (Triticum dicoccoides) populations. Theoretical and Applied Genetics, 122(1):175-187.
  • Horňák, Karel; Zeder, Michael; Blom, Judith F; Posch, Thomas; Pernthaler, Jakob (2011). Suboptimal light conditions negatively affect the heterotrophy of Planktothrix rubescens but are beneficial for accompanying Limnohabitans spp. Environmental Microbiology, 14(3):765-778.
  • Salcher, Michaela M; Pernthaler, Jakob; Frater, Nakita; Posch, Thomas (2011). Vertical and longitudinal distribution patterns of different bacterioplankton populations in a canyon-shaped, deep prealpine lake. Limnology and Oceanography, 56(6):2027-2039.
  • Chauhan, Harsh; Khurana, Neetika; Tyagi, Akhilesh K; Khurana, Jitendra P; Khurana, Paramjit (2011). Identification and characterization of high temperature stress responsive genes in bread wheat (Triticum aestivum L.) and their regulation at various stages of development. Plant molecular biology, 75(1-2):35-51.
  • Chauhan, Harsh; Khurana, Neetika; Agarwal, Pinky; Khurana, Paramjit (2011). Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Molecular Genetics and Genomics, 286(2):171-187.
  • Tsuchimatsu, Takashi; Shimizu, Kentaro K (2011). How the model species Arabidopsis thaliana became self-fertilizing: evolution of breeding systems revealed by DNA sequence information. Kagaku To Seibutsu, 49(6):364-366.
  • Bailly, Aurélien; Yang, Haibing; Martinoia, Enrico; Geisler, Markus; Murphy, Angus S (2011). Plant lessons: exploring ABCB functionality through structural modeling. Frontiers in Plant Science, 2:108.
  • Takeuchi, Yayoi; Shimizu, Kentaro K (2011). The study of microbial diversity and function using metagenomics. Shuseibutsugaku kenkyū, 34:123-138.
  • Saito, Hideyuki; Sese, Jun; Shimizu-Inatsugi, Rie; Kamimura, Shoko; Yamada, Tadayasu; Shimizu, Kentaro K (2011). Development of DNA microarray for Fagus crenata. Forest Tree Breeding of Hokkaido, 54(2):11-14.
  • Zeller, Simon Lukas. Ecology of genetically modified wheat: performance, resistance costs, mixture effects and gene flow. 2011, University of Zurich, Faculty of Science.
  • von Burg, Simone Katrin. Transgenic wheat and non-target impacts on insect herbivores and food webs. 2011, University of Zurich, Faculty of Science.
  • Schulthess, B. Role of the sigB-dependent yabJ-spoVG operon in the regulation of antibiotic resistance and virulence determinants in Staphylococcus aureus. 2011, University of Zurich, Faculty of Medicine.
  • Wichmann, Fabienne. Genetic characterization of the interaction between Italian ryegrass (Lolium multiflorum Lam.) and Xanthomonas translucens pv. graminis. 2011, University of Zurich, Faculty of Science.
  • Schreiner, Sabrina A. Analysis of in vitro growth and characterisation of metabolic pathways of Mycoplasma suis linked to pathogenesis. 2011, University of Zurich, Faculty of Science.
  • Polinceusz, Anna Izabela. Molecular characterisation of the Arabidopsis TT12 MATE protein and functional analysis of other plant MATE transporters. 2011, University of Zurich, Faculty of Science.
  • Njau, P N. Comprehensive analysis and initial exploitation of resistance to wheat stem rust race Ug99. 2011, University of Zurich, Faculty of Science.
  • Kuhn, B. A genetic study identifying the physiological effects and cellular target processes of Flavonols in the roll-2 mutant of Arabidopsis thaliana. 2011, University of Zurich, Faculty of Science.
  • Inhülsen, Silja. Investigations of the Quorum sensing circuitry in "Burkholderia cenocepacia" H111. 2011, University of Zurich, Faculty of Science.
  • Gattlen, J. Production of standardized biofilms with isolates from household washing machines. 2011, University of Zurich, Faculty of Science.
  • Egert, A. Raffinose Oligosaccharide Catabolism in Arabidopsis thaliana. 2011, University of Zurich, Faculty of Science.
  • Blom, D; Fabbri, C; Eberl, L; Weisskopf, L (2011). Volatile-mediated killing of Arabidopsis thaliana by Bacteria is mainly due to hydrogen cyanide. Applied and Environmental Microbiology, 77(3):1000-1008.
  • Schneider, T; Schmid, E; de Castro, J V; Cardinale, M; Eberl, L; Grube, M; Berg, G; Riedel, K (2011). Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics. Proteomics, 11(13):2752-2756.
  • Eberl, L; Riedel, K (2011). Mining quorum sensing regulated proteins - Role of bacterial cell-to-cell communication in global gene regulation as assessed by proteomics. Proteomics, 11(15):3070-3085.
  • Juhas, M; Eberl, L; Glass, J I (2011). Essence of life: essential genes of minimal genomes. Trends in Cell Biology, 21(10):562-568.
  • Gasser, I; Cardinale, M; Müller, H; Heller, S; Eberl, L; Lindenkamp, N; Kaddor, C; Steinbüchel, A; Berg, G (2011). Analysis of the endophytic lifestyle and plant growth promotion of Burkholderia terricola ZR2-12. Plant and Soil, 347(1-2):125-136.
  • Weisskopf, L; Heller, S; Eberl, L (2011). Burkholderia species are major inhabitants of white lupin cluster roots. Applied and Environmental Microbiology, 77(21):7715-7720.
  • Jordan, T; Seeholzer, S; Schwizer, S; Töller, A; Somssich, I E; Keller, B (2011). The wheat Mla homologue TmMla1 exhibits an evolutionarily conserved function against powdery mildew in both wheat and barley. The Plant Journal, 65(4):610-621.
  • Schlüter, P M; Ruas, P M; Kohl, G; Ruas, D F; Stuessy, T F; Paulus, H F (2011). Evidence for progenitor-derivative speciation in sexually deceptive orchids. Annals of Botany, 108(5):895-906.
  • El-Kasmi, F; Pacher, T; Strompen, G; Stierhof, Y D; Müller, L M; Koncz, C; Mayer, U; Jürgens, G (2011). Arabidopsis SNARE protein SEC22 is essential for gametophyte development and maintenance of Golgi-stack integrity. The Plant Journal, 66(2):268-279.
  • Richter, S; Müller, L M; Stierhof, Y D; Mayer, U; Takada, N; Kost, B; Vieten, A; Geldner, N; Koncz, C; Jürgens, G (2011). Polarized cell growth in Arabidopsis requires endosomal recycling mediated by GBF1-related ARF exchange factors. Nature Cell Biology, 14(1):80-86.
  • Jang, G; Yi, K; Pires, N D; Menand, B; Dolan, L (2011). RSL genes are sufficient for rhizoid system development in early diverging land plants. Development, 138(11):2273-2281.
  • Datta, S; Kim, C M; Pernas, M; Pires, N D; Proust, H; Tam, T; Vijayakumar, P; Dolan, L (2011). Root hairs: development, growth and evolution at the plant-soil interface. Plant and Soil, 346(1-2):1-14.
  • Bandaranayake, P C G; Tomilov, A; Tomilova, N B; Ngo, Q A; Wickett, N; dePamphilis, C W; Yoder, J I (2011). The TvPirin gene is necessary for haustorium development in the parasitic plant Triphysaria versicolor. Plant Physiology, 158(2):1046-1053.
  • Capoen, W; Sun, J; Wysham, D; Otegui, M S; Venkateshwaran, M; Hirsch, S; Miwa, H; Downie, J A; Morris, R J; Ané, J M; Oldroyd, G E D (2011). Nuclear membranes control symbiotic calcium signaling of legumes. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 108(34):14348-14353.
  • Horváth, B; Yeun, L H; Domonkos, A; Halász, G; Gobbato, E; Ayaydin, F; Miró, K; Hirsch, S; Sun, J; Tadege, M; Ratet, P; Mysore, K S; Ané, J M; Oldroyd, G E D; Kaló, P (2011). Medicago truncatula IPD3 is a member of the common symbiotic signaling pathway required for rhizobial and mycorrhizal symbioses. Molecular Plant-Microbe Interactions, 24(11):1345-1358.
  • Muller, B (2011). Generic signal-specific responses: cytokinin and context-dependent cellular responses. Journal of Experimental Botany, 62(10):3273-3288.
  • Hedhly, A (2011). Sensitivity of flowering plant gametophytes to temperature fluctuations. Environmental and Experimental Botany, 74:9-16.
  • Jacquat, Christiane (2011). Analyse carpologique d’échantillons de l’âge du Bronze. In: Schopfer Luginbuhl, Anne; Nitu, Claudia; Rychner-Faraggi, Anne-Marie; Poncet Schmid, Marie; Blomjous, Carole; Nuoffer, Pascal. Le cadre environnemental et les occupations du Néolithique au Bronze moyen. Lausanne: Cahiers d’archéologie romande, 74-77.
  • Jacquat, Christiane; Della Casa, Philippe; Studer, Joseph (2011). Airolo-Madrano « In Grop », Haute Léventine (Tessin, Suisse) : première esquisse de l’espace archéologique et du paléoenvironnement d’un site montagnard aux âges du Bronze et du Fer. In: Studer, Jacqueline; David-Elbiali, Mireille; Besse, Marie. Paysage Landschaft Paesaggio. Actes du colloque de Genève 2007. Lausanne: Cahiers d’archéologie romande, 83-92.
  • Xu, S; Schlüter, P M; Scopece, G; Breitkopf, H; Gross, K; Cozzolino, S; Schiestl, F P (2011). Floral isolation is the main reproductive barrier among closely related sexually deceptive orchids. Evolution, 65(9):2606-2620.
  • Felekis, D (2011). Quantifying growth mechanics of living, growing plant cells in situ using microrobotics. Micro & Nano Letters, 6(5):311.
  • Dumbliauskas, E; Lechner, E; Jaciubek, M; Berr, A; Pazhouhandeh, M; Alioua, M; Cognat, V; Brukhin, V; Koncz, C; Grossniklaus, U; Molinier, J; Genschik, P (2011). The Arabidopsis CUL4-DDB1 complex interacts with MSI1 and is required to maintain MEDEA parental imprinting. The EMBO Journal, 30(4):731-743.
  • Boisson-Dernier, A; Kessler, S A; Grossniklaus, U (2011). The walls have ears: the role of plant CrRLK1Ls in sensing and transducing extracellular signals. Journal of Experimental Botany, 62(5):1581-1591.
  • Raissig, M T; Baroux, C; Grossniklaus, U (2011). Regulation and flexibility of genomic imprinting during seed development. Plant Cell, 23(1):16-26.
  • Baroux, C; Raissig, M T; Grossniklaus, U (2011). Epigenetic regulation and reprogramming during gamete formation in plants. Current Opinion in Genetics & Development, 21(2):124-133.
  • Paszkowski, J; Grossniklaus, U (2011). Selected aspects of transgenerational epigenetic inheritance and resetting in plants. Current Opinion in Plant Biology, 14(2):195-203.
  • Brukhin, V B; Jaciubek, M; Bolaños Carpio, A; Kuzmina, V; Grossniklaus, U (2011). Female gametophytic mutants of Arabidopsis thaliana identified in a gene trap insertional mutagenesis screen. International Journal of Developmental Biology, 55(1):73-84.
  • Koszegi, D; Johnston, A J; Rutten, T; Czihal, A; Altschmied, L; Kumlehn, J; Wüst, S E J; Kirioukhova, O; Gheyselinck, J; Grossniklaus, U; Bäumlein, H (2011). Members of the RKD transcription factor family induce an egg cell-like gene expression program. Plant Journal, 67(2):280-291.
  • Grossniklaus, U (2011). Plant germline development: a tale of cross-talk, signaling, and cellular interactions. Sexual Plant Reproduction, 24(2):91-95.
  • Autran, D; Baroux, C; Raissig, M T; Lenormand, T; Wittig, M; Grob, S; Steimer, A; Barann, M; Klostermeier, U C; Leblanc, O; Vielle-Calzada, J P; Rosenstiel, P; Grimanelli, D; Grossniklaus, U (2011). Maternal epigenetic pathways control parental contributions to Arabidopsis early embryogenesis. Cell, 145(5):707-719.
  • Kirioukhova, O; Johnston, A J; Kleen, D; Kägi, C; Baskar, R; Moore, J M; Bäumlein, H; Gross-Hardt, R; Grossniklaus, U (2011). Female gametophytic cell specification and seed development require the function of the putative Arabidopsis INCENP ortholog WYRD. Development, 138(16):3409-3420.
  • McKeown, P C; Laouielle-Duprat, S; Prins, P; Wolff, P; Schmid, M W; Donoghue, M T A; Fort, A; Duszynska, D; Comte, A; Lao, N T; Wennblom, T J; Smant, G; Köhler, C; Grossniklaus, U; Spillane, C (2011). Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds. BMC Plant Biology, 11:113.
  • Kessler, S A; Grossniklaus, U (2011). She's the boss: signaling in pollen tube reception. Current Opinion in Plant Biology, 14(5):622-627.
  • Schmidt, A; Wuest, S E; Vijverberg, K; Baroux, C; Kleen, D; Grossniklaus, U (2011). Transcriptome analysis of the Arabidopsis megaspore mother cell uncovers the importance of RNA helicases for plant germline development. PLoS Biology, 9(9):e1001155.
  • Singh, B R; Gupta, S K; Azaizeh, H; Shilev, S; Sudre, D; Song, W Y; Martinoia, E; Mench, M (2011). Safety of food crops on land contaminated with trace elements. Journal of the Science of Food and Agriculture, 91(8):1349-1366.
  • Wicker, Thomas; Mayer, K F X; Gundlach, H; Martis, M; Steuernagel, B; Scholz, Uwe; Simková, H; Kubaláková, M; Choulet, F; Taudien, S; Platzer, M; Feuillet, C; Fahima, T; Budak, H; Dolezel, J; Keller, B; Stein, N (2011). Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. The Plant Cell, 23(5):1706-1718.
  • Oberhaensli, S; Parlange, F; Buchmann, J P; Jenny, F H; Abbott, J C; Burgis, T A; Spanu, P D; Keller, B; Wicker, T (2011). Comparative sequence analysis of wheat and barley powdery mildew fungi reveals gene colinearity, dates divergence and indicates host-pathogen co-evolution. Fungal Genetics And Biology, 48(3):327 - 334.
  • Parlange, F; Oberhaensli, S; Breen, J; Platzer, M; Taudien, S; Šimková, H; Wicker, T; Doležel, J; Keller, B (2011). A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome. Functional & Integrative Genomics, 11(4):671-677.
  • Hörtensteiner, S; Kräutler, B (2011). Chlorophyll breakdown in higher plants.. Biochimica et Biophysica Acta, 1807(8):977-988.
  • Kong, J; Park, J; Choi, H; Burla, B; Kretschmar, T; Lee, Y; Martinoia, E (2011). Plant ABC Transporters. The arabidopsis book, 9:e0153.
  • Song, W-Y; Choi, K-S; Alexis, D A; Martinoia, E; Lee, Y (2011). Brassica juncea plant cadmium resistance 1 protein (BjPCR1) facilitates the radial transport of calcium in the root. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 108(49):19808-19813.
  • Meyer, S; Scholz-Starke, J; De Angeli, A; Kovermann, P; Burla, B; Gambale, F; Martinoia, E (2011). Malate transport by the vacuolar AtALMT6 channel in guard cells is subject to multiple regulation. The Plant Journal, 67(2):247-257.
  • Kretzschmar, T; Burla, B; Lee, Y; Martinoia, E; Nagy, R (2011). Functions of ABC transporters in plants. Essays in Biochemistry, 50(1):145-60.
  • Tohge, T; Ramos, M S; Nunes-Nesi, A; Mutwil, M; Giavalisco, P; Steinhauser, D; Schellenberg, M; Willmitzer, L; Persson, S; Martinoia, E; Fernie, A R (2011). Toward the storage metabolome: profiling the barley vacuole. Plant Physiology, 157(3):1469-82.
  • Song, W-Y; Hörtensteiner, S; Tomioka, R; Lee, Y; Martinoia, E (2011). Common functions or only phylogenetically related? The large family of PLAC8 motif-containing/PCR genes. Molecules and Cells, 31(1):1-7.
  • Ramos, M S; Abele, R; Nagy, R; Grotemeyer, M S; Tampé, R; Rentsch, D; Martinoia, E (2011). Characterization of a transport activity for long-chain peptides in barley mesophyll vacuoles. Journal of Experimental Botany, 62(7):2403-2410.
  • Araújo, W L; Nunes-Nesi, A; Osorio, S; Usadel, B; Fuentes, D; Nagy, R; Balbo, I; Lehmann, M; Studart-Witkowski, C; Tohge, T; Martinoia, E; Jordana, X; Damatta, F M; Fernie, A R (2011). Antisense inhibition of the iron-sulphur subunit of succinate dehydrogenase enhances photosynthesis and growth in tomato via an organic acid-mediated effect on stomatal aperture.. Plant Cell, 23(2):600-627.
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