* equal contribution

Abrouk, M., Stritt, C., Müller, T., Keller, B., Roulin, A.C., and Krattinger, SG. 2018. High-throughput genotyping of the spelt gene pool reveals patterns of agricultural history in Europe.

Bourgeois, Y., Stritt, C., Walser, J-C., Gordon, S.P., Vogel, J.P., and Roulin, A.C. 2018. Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon. The Plant Journal. 96(2):438-451.

Stritt, C., Gordon, S.P., Vogel, J.P, Wicker, T., and Roulin, A.C. 2018. Recent activity in expanding populations and purifying selection have shaped transposable element landscapes across natural accessions of the mediterranean grass Brachypodium distachyon. Genome Biology and Evolution. 10(1): 304-318.

Boni R., Chauhan H., Hensel G., Roulin A., Sucher J., Kumlehn J., Brunner S., Krattinger S.G., Keller B. 2018. Pathogen-inducible Ta-Lr34res expression in heterologous barley confers disease resistance without negative pleiotropic effects. Plant Biotechnol J. 6(1):245-253.

Gordon, S., Contreras-Moreiram B., Woods, DP., Des Marais, DL., Burgess, D., Shu, S., Stritt, C., Roulin, AC., Schackwitz, W., Tyler, et al., 2017. Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with phenotypic variation. Nature communication. 8: 2184

Bourgeois*, Y., Roulin, A.C.*, Muller, K., and Ebert, D. 2017. Parasitism drives host genome evolution: insights from the Pasteuria ramosa - Daphnia magna system. Evolution. 71-4:1106–1113.

Roulin, A.C., Bourgeois, Y., Stiefel, U., Walser, J-C., and Ebert, D. 2016. A photoreceptor contributes to the natural variation of diapause induction in Daphnia magna. Molecular Biology and Evolution. 33:3194-3204.

Schlotz, N., Roulin, A.C., Ebert, D., and Martin-Creuzburg, D. 2016. Combined effects of dietary polyunsaturated fatty acids and parasite exposure on eicosanoid-related gene expression in an invertebrate model. Comparative Biochemistry and Physiology. 201:115-123

Roulin, A.C., Mariadassou, M., Hall, M.D., Walser, J-C., Haag, C., and Ebert, D. 2015. High genetic variation in resting stage production in a metapopulation: Is there evidence for local adaptation? Evolution. 69(10): 2747-2756.

Roulin, A.C., Wu, M., Pichon, P., Arbore, R., Kuhn-Buhlmann, S., Koelliker, K., Walser, JC. 2014. De novo transcriptome assembly and validation in the European earwig (Dermaptera, Forficula auricularia). Plos One. 10;9(4):e94098

Roulin, A., Routtu, J., Janicke, T., Hall, M., Coulson, I., Haag, C., and Ebert, D. 2013. Local adaptation of sex induction in a facultative sexual crustacean: insights from QTL mapping and natural populations of Daphnia magna. Molecular Ecology. 22: 3567-79.

Roulin, A., Auer, P.L, Libault, M., Schlueter, R., Farmer, A, May, G., Stacey, G., Doerge ,R.W. and Jackson, S.A. 2013. Duplicate gene fate in the highly duplicated soybean (Glycine max) genome. The Plant Journal. 73: 143-153.

Sabot, F., Picault, N., El-Baidouri, M., Llauro, C., Chaparro, C., Piegu, B., Roulin, A., Guiderdoni, E., Delabastide, M., McCombie, R., Panaud, O. 2011. Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re- sequencing data. The Plant Journal. 66: 241-6

Roulin, A., Chaparro, C., Piegu, B., Jackson, S., and Panaud, O. 2010. Paleogenomic analysis of the short arm of chromosome 3 reveals the history of the African and Asian progenitors of cultivated rices. Genome Biology and Evolution. 2: 132-9

Roulin, A., Piegu, B., Fortune, P., Sabot, F., d'Hont, A., Manicacci, D., and Panaud, O. 2009. Whole genome surveys of rice, maize and Sorghum reveal multiple transfers of the LTR retrotransposon Route66 in Poaceae. BMC Evolutionary Biology. 9:58.

Roulin, A., Piegu, B, Wing, R.A, and Panaud, O. 2008. Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genue Oryza. The Plant Journal. 53: 950-959.

Fortune, P.*,Roulin, A.*, and Panaud O. 2008. Horizontal transfer of transposable element in plants. Communicative and Integrative Biology. 1: 1-4.

Piegu, B., Guyot, R., Picault, N., Roulin, A., Saniyal, A., Kim, H., Collura, K., Brar, D., Jackson, S., Wing, R., and Panaud, O. 2006. Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in the genus Oryza. Genome Research. 16: 1262-1269.