Publications

ZORA Publication List

Publications

• 2025

  • Kracik-Dyer, Elizabeth; Baroux, Célia (2025). 3D STED Imaging of Isolated Arabidopsis thaliana Nuclei. In: Baroux, Célia; Tatout, Christophe. Methods For Plant Nucleus And Chromatin Studies. New York, NY: Springer (Bücher), 263-280.

• 2024

  • Rutowicz, Kinga; Lüthi, Joel; de Groot, Reinoud; Holtackers, René; Yakimovich, Yauhen; Pazmiño, Diana M; Gandrillon, Olivier; Pelkmans, Lucas; Baroux, Célia (2024). Multiscale chromatin dynamics and high entropy in plant iPSC ancestors. Journal of Cell Science, 137(20):jcs261703.
  • Li, Yanru. H1 Citrullination – An Atypical Modification Regulating Germline Fate in Arabidopsis. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Lerra, Luigi; Panatta, Martina; Bär, Dominik; Zanini, Isabella; Tan, Jennifer Yihong; Pisano, Agnese; Mungo, Chiara; Baroux, Célia; Panse, Vikram Govind; Marques, Ana C; Santoro, Raffaella (2024). An RNA-dependent and phase-separated active subnuclear compartment safeguards repressive chromatin domains. Molecular Cell, 84(9):1667-1683.e10.

• 2023

  • Mermet, Sarah; Voisin, Maxime; Mordier, Joris; Dubos, Tristan; Tutois, Sylvie; Tuffery, Pierre; Baroux, Célia; Tamura, Kentaro; Probst, Aline V; Vanrobays, Emmanuel; Tatout, Christophe (2023). Evolutionarily conserved protein motifs drive interactions between the plant nucleoskeleton and nuclear pores. Plant Cell, 35(12):4284-4303.
  • Teano, Gianluca; Concia, Lorenzo; Wolff, Léa; Carron, Léopold; Biocanin, Ivona; Adamusová, Kateřina; Fojtová, Miloslava; Bourge, Michael; Kramdi, Amira; Colot, Vincent; Grossniklaus, Ueli; Bowler, Chris; Baroux, Célia; Carbone, Alessandra; Probst, Aline V; Schrumpfová, Petra Procházková; Fajkus, Jiří; Amiard, Simon; Grob, Stefan; Bourbousse, Clara; Barneche, Fredy (2023). Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis. Cell Reports, 42(8):112894.
  • Nowicka, Anna; Ferková, Luboslava; Said, Mahmoud; Kovacik, Martin; Zwyrtková, Jana; Baroux, Célia; Pecinka, Ales (2023). Non-Rabl chromosome organization in endoreduplicated nuclei of barley embryo and endosperm tissues. Journal of Experimental Botany, 74(8):2527-2541.
  • Perseus, Lena. Investigating diurnal changes in the chromatin organization of A. thaliana and the involvement of linker histone H1.. 2023, University of Zurich, Faculty of Science.
  • Ouedraogo, Inès; Lartaud, Marc; Baroux, Célia; Mosca, Gabriella; Delgado, Luciana; Leblanc, Oliver; Verdeil, Jean-Luc; Conéjéro, Geneviève; Autran, Daphné (2023). 3D cellular morphometrics of ovule primordium development in Zea mays reveal differential division and growth dynamics specifying megaspore mother cell singleness. Frontiers in Plant Science, 14:1174171.

• 2022

  • Randall, Ricardo S; Jourdain, Claire; Nowicka, Anna; et al; Panatta, Martina; Santoro, Raffaella; Routh, Devin; Baroux, Célia (2022). Image analysis workflows to reveal the spatial organization of cell nuclei and chromosomes. Nucleus, 13(1):277-299.
  • Tatout, Christophe; Mougeot, Guillaume; Parry, Geraint; Baroux, Célia; Pradillo, Mónica; Evans, David (2022). The INDEPTH (Impact of Nuclear Domains on Gene Expression and Plant Traits) Academy: a community resource for plant science. Journal of Experimental Botany, 73(7):1926-1933.
  • Wyler, Michele. The epigenetic impact of transposable elements on gene expression. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Schubert, Jasmin; Li, Yanru; Mendes, Marta A; Fei, Danli; Dickinson, Hugh; Moore, Ian; Baroux, Célia (2022). A procedure for Dex-induced gene transactivation in Arabidopsis ovules. Plant Methods, 18:41.

• 2021

  • Baroux, Célia (2021). Three-dimensional genome organization in epigenetic regulations: cause or consequence?. Current Opinion in Plant Biology, 61:102031.
  • Hernandez-Lagana, Elvira; Mosca, Gabriella; Mendocilla-Sato, Ethel; Pires, Nuno; Frey, Anja; Giraldo-Fonseca, Alejandro; Michaud, Caroline; Grossniklaus, Ueli; Hamant, Olivier; Godin, Christophe; Boudaoud, Arezki; Grimanelli, Daniel; Autran, Daphné; Baroux, Célia (2021). Organ geometry channels reproductive cell fate in the Arabidopsis ovule primordium. eLife, 10:e66031.

• 2020

  • Wyler, Michele; Stritt, Christoph; Walser, Jean-Claude; Baroux, Célia; Roulin, Anne C (2020). Impact of transposable elements on methylation and gene expression across natural accessions of Brachypodium distachyon. Genome Biology and Evolution, 12(11):1994-2001.
  • Teano, Gianluca; Concia, Lorenzo; Carron, Léopold; Wolff, Léa; Adamusová, Kateřina; Fojtová, Miloslava; Bourge, Michael; Kramdi, Amira; Colot, Vincent; Grossniklaus, Ueli; Bowler, Chris; Baroux, Célia; Carbone, Alessandra; Probst, Aline V; Procházková Schrumpfová, Petra; Fajkus, Jiří; Amiard, Simon; Grob, Stefan; Bourbousse, Clara; Barneche, Fredy (2020). Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis. bioRxiv 402172, Cold Spring Harbor Laboratory.
  • Hernandez-Lagana, Elvira; Mosca, Gabriella; Sato, Ethel Mendocilla; Pires, Nuno; Frey, Anja; Giraldo-Fonseca, Alejandro; Grossniklaus, Ueli; Hamant, Olivier; Godin, Christophe; Boudaoud, Arezki; Grimanelli, Daniel; Autran, Daphné; Baroux, Célia (2020). Organ geometry channels cell fate in the Arabidopsis ovule primordium. bioRxiv 226670, Cold Spring Harbor Laboratory.

• 2019

  • Rutowicz, Kinga; Lirski, Maciej; Mermaz, Benoît; Teano, Gianluca; Schubert, Jasmin; Mestiri, Imen; Kroteń, Magdalena A; Fabrice, Tohnyui Ndinyanka; Fritz, Simon; Grob, Stefan; Ringli, Christoph; Cherkezyan, Lusik; Barneche, Fredy; Jerzmanowski, Andrzej; Baroux, Célia (2019). Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis. Genome Biology, 20:157.
  • Díaz, Mariana; Pečinková, Petra; Nowicka, Anna; Baroux, Célia; Sakamoto, Takuya; Gandha, Priscilla Yuliani; Jeřábková, Hana; Matsunaga, Sachihiro; Grossniklaus, Ueli; Pecinka, Ales (2019). The SMC5/6 Complex Subunit NSE4A Is Involved in DNA Damage Repair and Seed Development. Plant Cell, 31(7):1579-1597.
  • Dumur, Tao; Duncan, Susan; Graumann, Katja; Desset, Sophie; Randall, Ricardo S; Scheid, Ortrun Mittelsten; Prodanov, Dimiter; Tatout, Christophe; Baroux, Célia (2019). Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions. Nucleus, 10(1):181-212.

• 2018

  • Schubert, Jasmin Anita. Investigating the mechanism and role of linker histone dynamics during plant reproduction. 2018, University of Zurich, Faculty of Science.

• 2017

  • Kotliński, Maciej; Knizewski, Lukasz; Muszewska, Anna; Rutowicz, Kinga; Lirski, Maciej; Schmidt, Anja; Baroux, Célia; Ginalski, Krzysztof; Jerzmanowski, Andrzej (2017). Phylogeny-based systematization of arabidopsis proteins with histone H1 globular domain. Plant Physiology, 174(1):27-34.

• 2015

  • Baroux, Célia. Chromatin dynamics in sexual plant reproduction. 2015, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.