Publications

ZORA Publication List

Publications

• 2025

  • Snoeck, Simon; Johanndrees, Oliver; Nürnberger, Thorsten; Zipfel, Cyril (2025). Plant pattern recognition receptors: from evolutionary insight to engineering. Nature Reviews. Genetics, 26(4):268-278.
  • Herold, Laura; Choi, Sera; He, Sheng Yang; Zipfel, Cyril (2025). The conserved AvrE family of bacterial effectors: functions and targets during pathogenesis. Trends in Microbiology, 33(2):184-193.
  • Herold, Laura; Ordon, Jana; Hua, Chenlei; Kohorn, Bruce D; Nürnberger, Thorsten; DeFalco, Thomas A; Zipfel, Cyril (2025). Arabidopsis WALL-ASSOCIATED KINASES are not required for oligogalacturonide-induced signaling and immunity. Plant Cell, 37(1):koae317.

• 2024

  • Keppler, Andreas; Roulier, Michelle; Pfeilmeier, Sebastian; Petti, Gabriella C; Sintsova, Anna; Maier, Benjamin A; Bortfeld-Miller, Miriam; Sunagawa, Shinichi; Zipfel, Cyril; Vorholt, Julia A (2024). Plant microbiota feedbacks through dose-responsive expression of general non-self response genes. Nature Plants, 11(1):74-89.
  • Zhai, Keran; Rhodes, Jack; Zipfel, Cyril (2024). A peptide-receptor module links cell wall integrity sensing to pattern-triggered immunity. Nature Plants, 10(12):2027-2037.
  • Gonçalves Dias, Márcia; Doss, Bassem; Rawat, Anamika; Siegel, Kristen R; Mahathanthrige, Tharika; Sklenar, Jan; Rodriguez Gallo, Maria Camila; Derbyshire, Paul; Dharmasena, Thakshila; Cameron, Emma; Uhrig, R Glen; Zipfel, Cyril; Menke, Frank L H; Monaghan, Jacqueline (2024). Subfamily C7 Raf‐like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in Arabidopsis thaliana. New Phytologist, 244(6):2278-2294.
  • Goto, Yukihisa; Kadota, Yasuhiro; Mbengue, Malick; Lewis, Jennifer D; Matsui, Hidenori; Maki, Noriko; Ngou, Bruno Pok Man; Sklenar, Jan; Derbyshire, Paul; Shibata, Arisa; Ichihashi, Yasunori; Guttman, David S; Nakagami, Hirofumi; Suzuki, Takamasa; Menke, Frank L H; Robatzek, Silke; Desveaux, Darrell; Zipfel, Cyril; Shirasu, Ken (2024). The leucine-rich repeat receptor kinase QSK1 regulates PRR-RBOHD complexes targeted by the bacterial effector HopF2Pto. Plant Cell, 36(12):4932-4951.
  • McLaughlin, Sarah Ashley. Unraveling Rhizosphere Communication: Characterization of Root Exudation for Bacterial Microbiome Recruitment across Species and Environments. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Makechemu, Moffat. Molecular Insights Into the Perception of Fungal-Derived Molecular Patterns and Its Impact on Disease Resistance. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Kaufmann, Moritz. Unravelling the Impact of Chitin Soil Amendment on Plant Using Omics Technologies with Lettuce as a Model Organism. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Herold, Laura. Characterization of Receptor Kinases Involved in Plant-Pathogen Interactions. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Moreira, Carlos J S; Escórcio, Rita; Bento, Artur; Bjornson, Marta; Herold, Laura; Tomé, Ana S; Martins, Celso; Fanuel, Mathieu; Martins, Isabel; Bakan, Benedicte; Zipfel, Cyril; Silva Pereira, Cristina (2024). Cutin-Derived Oligomers Induce Hallmark Plant Immune Responses. Journal of Experimental Botany, 75(16):5146-5161.
  • Snoeck, Simon; Lee, Hyun Kyung; Schmid, Marc W; Bender, Kyle W; Neeracher, Matthias J; Fernández-Fernández, Alvaro D; Santiago, Julia; Zipfel, Cyril (2024). Leveraging coevolutionary insights and AI-based structural modeling to unravel receptor–peptide ligand-binding mechanisms. Proceedings of the National Academy of Sciences of the United States of America, 121(33)::e2400862121.
  • Chu, Jiashu. Functional Characterization and Conservation of RLCK-VII/PBL Family Members and Substrates in Land Plants. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Lintz, Julie; Goto, Yukihisa; Bender, Kyle W; Bchini, Raphaël; Dubrulle, Guillaume; Cawston, Euan; Zipfel, Cyril; Duplessis, Sebastien; Petre, Benjamin (2024). Genetically clustered antifungal phytocytokines and receptor protein family members cooperate to trigger plant immune signaling. Journal of Experimental Botany:Epub ahead of print.
  • Kaufmann, Moritz; Li, Leilei; Van Poucke, Christof; Rhyner, Nicola; De Tender, Caroline; Uyttendaele, Mieke; Heyndrickx, Marc; Zipfel, Cyril; Pothier, Joël F; Bart, Cottyn (2024). Soil type and associated microbiomes influences chitin’s growth-promotion effect in lettuce. Phytobiomes Journal, 8(3):248-261.
  • Isaksson, Jonatan. Insight into the Molecular Mechanisms of the Interactions and Functions of the Wheat Powdery Mildew AVRPM3 and SVRPM3$^t{a1/f1}$ Effectors and the Wheat NLR-Type Immune Receptor PM3b. 2024, University of Zurich, Faculty of Science.
  • Cabre, Lisa; Jing, Lun; Makechemu, Moffat; Heluin, Kylhan; El Khamlichi, Sarah; Leprince, Jérôme; Kiefer-Meyer, Marie Christine; Pluchon, Sylvain; Mollet, Jean-Claude; Zipfel, Cyril; Nguema-Ona, Eric (2024). Additive and Specific Effects of Elicitor Treatments on the Metabolic Profile of Arabidopsis thaliana. Molecular Plant-Microbe Interactions, 37(2):112-126.
  • Goto, Yukihisa; Maki, Noriko; Sklenar, Jan; Derbyshire, Paul; Menke, Frank L H; Zipfel, Cyril; Kadota, Yasuhiro; Shirasu, Ken (2024). The phagocytosis oxidase/Bem1p domain-containing protein PB1CP negatively regulates the NADPH oxidase RBOHD in plant immunity. New Phytologist, 241(4):1763-1779.
  • Rhodes, Jack; Zipfel, Cyril (2024). Identification of Bioactive Phytocytokines Using Transcriptomic Data and Plant Bioassays. In: Schaller, Andreas. Plant Peptide Hormones and Growth Factors. New York: Springer, 23-35.

• 2023

  • Goto, Yukihisa; Kadota, Yasuhiro; Mbengue, Malick; Lewis, Jennifer D; Matsui, Hidenori; Maki, Noriko; Sklenar, Jan; Derbyshire, Paul; Shibata, Arisa; Ichihashi, Yasunori; Guttman, David S; Nakagami, Hirofumi; Suzuki, Takamasa; Menke, Frank L H; Robatzek, Silke; Desveaux, Darrell; Zipfel, Cyril; Shirasu, Ken (2023). The leucine-rich repeat receptor kinase QSK1 is a novel regulator of PRR-RBOHD complex and is employed by the bacterial effector HopF2$_{Pto}$ to modulate plant immunity. bioRxiv 571443, Cold Spring Harbor Laboratory.
  • Dias, Márcia Gonçalves; Doss, Bassem; Rawat, Anamika; Siegel, Kristen R; Mahathanthrige, Tharika; Sklenar, Jan; Derbyshire, Paul; Dharmasena, Thakshila; Cameron, Emma; Zipfel, Cyril; Menke, Frank L H; Monaghan, Jacqueline (2023). Subfamily C7 Raf-like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in Arabidopsis thaliana. bioRxiv 569073, Cold Spring Harbor Laboratory.
  • Wanke, Alan; van Boerdonk, Sarah; Mahdi, Lisa Katharina; Wawra, Stephan; Neidert, Miriam; Chandrasekar, Balakumaran; Saake, Pia; Saur, Isabel M L; Derbyshire, Paul; Holton, Nicholas; Menke, Frank L H; Brands, Mathias; Pauly, Markus; Acosta, Ivan F; Zipfel, Cyril; Zuccaro, Alga (2023). A GH81-type β-glucan-binding protein enhances colonization by mutualistic fungi in barley. Current Biology, 33(23):5071-5084.e7.
  • Yang, Huanjie; Kim, Xeniya; Skłenar, Jan; Aubourg, Sébastien; Sancho-Andrés, Gloria; Stahl, Elia; Guillou, Marie-Charlotte; Gigli-Bisceglia, Nora; Tran Van Canh, Loup; Bender, Kyle W; Stintzi, Annick; Reymond, Philippe; Sánchez-Rodríguez, Clara; Testerink, Christa; Renou, Jean-Pierre; Menke, Frank L H; Schaller, Andreas; Rhodes, Jack; Zipfel, Cyril (2023). Subtilase-mediated biogenesis of the expanded family of SERINE RICH ENDOGENOUS PEPTIDES. Nature Plants, 9(12):2085-2094.
  • Lintz, Julie; Goto, Yukihisa; Bender, Kyle W; Bchini, Raphaël; Dubrulle, Guillaume; Cawston, Euan; Zipfel, Cyril; Duplessis, Sebastien; Petre, Benjamin (2023). Genetically-clustered antifungal phytocytokines and receptor proteins function together to trigger plant immune signaling. bioRxiv 568785, University of Zurich.
  • Kesten, Christopher; Leitner, Valentin; Dora, Susanne; Sims, James W; Dindas, Julian; Zipfel, Cyril; De Moraes, Consuelo M; Sanchez-Rodriguez, Clara (2023). Soil-borne fungi alter the apoplastic purinergic signaling in plants by deregulating the homeostasis of extracellular ATP and its metabolite adenosine. eLife, 12:online.
  • Blekemolen, Mila C; Liu, Zunyong; Stegman, Martin; Zipfel, Cyril; Shan, Libo; Takken, Frank L W (2023). The PTI-suppressing Avr2 effector from Fusarium oxysporum suppresses mono-ubiquitination and plasma membrane dissociation of BIK1. Molecular Plant Pathology, 24(10):1273-1286.
  • Mühlenbeck, Henning; Tsutsui, Yuko; Lemmon, Mark A; Bender, Kyle W; Zipfel, Cyril (2023). Allosteric activation of the co-receptor BAK1 by the EFR receptor kinase initiates immune signaling. bioRxiv 554490, Cold Spring Harbor Laboratory.
  • Pršić, Jelena; Gilliard, Guillaume; Ibrahim, Heba; Argüelles-Arias, Anthony; Rondelli, Valeria; Crowet, Jean-Marc; Genva, Manon; Luzuriaga-Loaiza, W Patricio; Deboever, Estelle; Nasir, M Nail; Lins, Laurence; Mathelie-Guinlet, Marion; Boubsi, Farah; Eschrig, Sabine; Ranf, Stefanie; Dorey, Stephan; Coninck, Barbara De; Nürnberger, Thorsten; Mongrand, Sébastien; Höfte, Monica; Zipfel, Cyril; Dufrêne, Yves F; Koutsioubas, Alexandros; Brocca, Paola; Deleu, Magali; Ongena, Marc (2023). Mechanosensing and Sphingolipid-Docking Mediate Lipopeptide-Induced Immunity in Arabidopsis. bioRxiv 547613, University of Zurich.
  • George, Jeoffrey; Stegmann, Martin; Monaghan, Jacqueline; Bailey-Serres, Julia; Zipfel, Cyril (2023). Arabidopsis translation initiation factor binding protein CBE1 negatively regulates accumulation of the NADPH oxidase respiratory burst oxidase homolog D. Journal of Biological Chemistry, 299(8):105018.
  • Bender, Kyle W; Zipfel, Cyril (2023). Paradigms of receptor kinase signaling in plants. Biochemical Journal, 480(12):835-854.
  • Adero, Mark Ochieng; Tripathi, Jaindra Nath; Oduor, Richard Okoth; Zipfel, Cyril; Tripathi, Leena (2023). Transgenic expression of Arabidopsis ELONGATION FACTOR-TU RECEPTOR (AtEFR) gene in banana enhances resistance to Banana Xanthomonas Wilt disease. bioRxiv 543870, University of Zurich.
  • Moreira, Carlos J S; Escórcio, Rita; Bento, Artur; Bjornson, Marta; Tomé, Ana S; Martins, Celso; Fanuel, Mathieu; Martins, Isabel; Bakan, Benedicte; Zipfel, Cyril; Pereira, Cristina Silva (2023). Cutin-Derived Oligomers Act as Damage-Associated Molecular Patterns in Arabidopsis thaliana. bioRxiv 540997, University of Zurich.
  • Hurst, Charlotte H; Turnbull, Dionne; Xhelilaj, Kaltra; Myles, Sally; Pflughaupt, Robin L; Kopischke, Michaela; Davies, Paul; Jones, Susan; Robatzek, Silke; Zipfel, Cyril; Gronnier, Julien; Hemsley, Piers A (2023). S-acylation stabilizes ligand-induced receptor kinase complex formation during plant pattern-triggered immune signaling. Current Biology, 33(8):1588-1596.e6.
  • Wanke, Alan; van Boerdonk, Sarah; Mahdi, Lisa K; Wawra, Stephan; Neidert, Miriam; Chandrasekar, Balakumaran; Saake, Pia; Saur, Isabel M L; Derbyshire, Paul; Holton, Nicholas; Menke, Frank L H; Brands, Mathias; Pauly, Markus; Acosta, Ivan F; Zipfel, Cyril; Zuccaro, Alga (2023). A GH81-type β-glucan-binding protein facilitates colonization by mutualistic fungi in barley. bioRxiv 536646, University of Zurich.
  • Smokvarska, Marija; Bayle, Vincent; Maneta-Peyret, Lilly; Fouillen, Laetitia; Poitout, Arthur; Dongois, Armelle; Fiche, Jean-Bernard; Gronnier, Julien; Garcia, José; Höfte, Herman; Nolmann, Marcelo; Zipfel, Cyril; Maurel, Christophe; Moreau, Patrick; Jaillais, Yvon; Martiniere, Alexandre (2023). The receptor kinase FERONIA regulates phosphatidylserine localization at the cell surface to modulate ROP signaling. Science Advances, 9(14):eadd4791.
  • Chu, Jiashu; Monte, Isabel; DeFalco, Thomas A; Köster, Philipp; Derbyshire, Paul; Menke, Frank L H; Zipfel, Cyril (2023). Conservation of the PBL-RBOH immune module in land plants. Current Biology, 33(6):1130-1137.e5.
  • Wang, Qian; Aliaga Fandino, A Cecilia; Graeff, Moritz; DeFalco, Thomas A; Zipfel, Cyril; Hardtke, Christian S (2023). A phosphoinositide hub connects CLE peptide signaling and polar auxin efflux regulation. Nature Communications, 14(1):423.
  • Hurst, Charlotte H; Turnbull, Dionne; Xhelilaj, Kaltra; Myles, Sally; Pflughaupt, Robin L; Kopischke, Michaela; Davies, Paul; Jones, Susan; Robatzek, Silke; Zipfel, Cyril; Gronnier, Julien; Hemsley, Piers A (2023). S-acylation stabilizes ligand-induced receptor kinase complex formation during plant pattern-triggered immune signalling. bioRxiv 457756, University of Zurich.
  • Mühlenbeck, Henning; Tsutsui, Yuko; Lemmon, Mark A; Bender, Kyle W; Zipfel, Cyril (2023). Allosteric activation of the co-receptor BAK1 by the EFR receptor kinase initiates immune signaling. eLife:online.
  • Adero, Mark; Tripathi, Jaindra Nath; Oduor, Richard; Zipfel, Cyril; Tripathi, Leena (2023). Transgenic expression of Arabidopsis ELONGATION FACTOR-TU RECEPTOR (AtEFR) gene in banana enhances resistance against Xanthomonas campestris pv. musacearum. PLoS ONE, 18(9):online.
  • Abarca Cifuentes, Alicia. Family-wide evaluation of Arabidopsis thaliana Rapid Alkanization Factor (RALF) peptides and their implication in immunity. 2023, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Li, Leilei; Kaufmann, Moritz; Makechemu, Moffat; Van Poucke, Christof; De Keyser, Ellen; Uyttendaele, Mieke; Zipfel, Cyril; Cottyn, Bart; Pothier, Joël F (2023). Assessment of transcriptional reprogramming of lettuce roots in response to chitin soil amendment. Frontiers in Plant Science, 14:1158068.

• 2022

  • Yu, Gang; Derkacheva, Maria; Rufian, Jose S; Brillada, Carla; Kowarschik, Kathrin; Jiang, Shushu; Derbyshire, Paul; Ma, Miaomiao; DeFalco, Thomas A; Morcillo, Rafael J L; Stransfeld, Lena; Wei, Yali; Zhou, Jian‐Min; Menke, Frank L H; Trujillo, Marco; Zipfel, Cyril; Macho, Alberto P (2022). The Arabidopsis E3 ubiquitin ligase PUB4 regulates BIK1 and is targeted by a bacterial type-III effector. The EMBO Journal, 41(23):e107257.
  • Fan, Li; Fröhlich, Katja; Melzer, Eric; Pruitt, Rory N; Albert, Isabell; Zhang, Lisha; Joe, Anna; Hua, Chenlei; Song, Yanyue; Albert, Markus; Kim, Sang-Tae; Weigel, Detlef; Zipfel, Cyril; Chae, Eunyoung; Gust, Andrea A; Nürnberger, Thorsten (2022). Genotyping-by-sequencing-based identification of Arabidopsis pattern recognition receptor RLP32 recognizing proteobacterial translation initiation factor IF1. Nature Communications, 13:1294.
  • Noble, Jennifer A; Bielski, Nicholas V; Liu, Ming-Che James; DeFalco, Thomas A; Stegmann, Martin; Nelson, Andrew D L; McNamara, Kara; Sullivan, Brooke; Dinh, Khanhlinh K; Khuu, Nicholas; Hancock, Sarah; Shiu, Shin-Han; Zipfel, Cyril; Cheung, Alice Y; Beilstein, Mark A; Palanivelu, Ravishankar (2022). Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization. Plant Physiology, 190(4):2539-2556.
  • Rhodes, Jack; Zipfel, Cyril; Jones, Jonathan D G; Ngou, Bruno Pok Man (2022). Concerted actions of PRR- and NLR-mediated immunity. Essays in biochemistry, 66(5):501-511.
  • Köster, Philipp; DeFalco, Thomas A; Zipfel, Cyril (2022). Ca 2+ signals in plant immunity. The EMBO Journal, 41(12):e110741.
  • Rhodes, Jack; Roman, Andra-Octavia; Bjornson, Marta; Brandt, Benjamin; Derbyshire, Paul; Wyler, Michele; Schmid, Marc W; Menke, Frank L H; Santiago, Julia; Zipfel, Cyril (2022). Perception of a conserved family of plant signalling peptides by the receptor kinase HSL3. eLife, 11:e74687.
  • Krishna, Pilla Sankara; Woodcock, Stuart Daniel; Pfeilmeier, Sebastian; Bornemann, Stephen; Zipfel, Cyril; Malone, Jacob George (2022). Pseudomonas syringae addresses distinct environmental challenges during plant infection through the coordinated deployment of polysaccharides. Journal of Experimental Botany, 73(7):2206-2221.
  • DeFalco, Thomas A; Anne, Pauline; James, Sean R; Willoughby, Andrew C; Schwanke, Florian; Johanndrees, Oliver; Genolet, Yasmine; Derbyshire, Paul; Wang, Qian; Rana, Surbhi; Pullen, Anne-Marie; Menke, Frank L H; Zipfel, Cyril; Hardtke, Christian S; Nimchuk, Zachary L (2022). A conserved module regulates receptor kinase signalling in immunity and development. Nature Plants, 8(4):356-365.
  • Schumacher, Isabel; Menghini, Damian; Ovinnikov, Serguei; Hauenstein, Mareike; Fankhauser, Niklaus; Zipfel, Cyril; Hörtensteiner, Stefan; Aubry, Sylvain (2022). Evolution of chlorophyll degradation is associated with plant transition to land. The Plant Journal, 109(6):1473-1488.
  • Gronnier, Julien; Franck, Christina Maria; Stegmann, Martin; DeFalco, Thomas A; Abarca, Alicia; von Arx, Michelle; Dünser, Kai; Lin, Wenwei; Yang, Zhenbiao; Kleine-Vehn, Jürgen; Ringli, Christoph; Zipfel, Cyril (2022). Regulation of immune receptor kinase plasma membrane nanoscale organization by a plant peptide hormone and its receptors. eLife, 22:e74162.
  • Dindas, Julian; DeFalco, Thomas A; Yu, Gang; Zhang, Lu; David, Pascale; Bjornson, Marta; Thibaud, Marie-Christine; Custódio, Valéria; Castrillo, Gabriel; Nussaume, Laurent; Macho, Alberto P; Zipfel, Cyril (2022). Direct inhibition of phosphate transport by immune signaling in Arabidopsis. Current Biology, 32(2):488-495.
  • Stirnemann, Eva Marina. Impaired ABCC5/ MRP5-mediated inositol hexakisphosphate transport and its effects in Arabidopsis thaliana. 2022, University of Zurich, Faculty of Science.
  • Schumacher, Isabel Maria. Evolution of chlorophyll degradation in viridiplantae. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Manser, Beatrice. Molecular characterization of Avr function and plant recognition on the wheat powdery mildew effector AvrPm2. 2022, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.

• 2021

  • Piazza, Stefano; Campa, Manuela; Pompili, Valerio; Costa, Lorenza Dalla; Salvagnin, Umberto; Nekrasov, Vladimir; Zipfel, Cyril; Malnoy, Mickael (2021). The Arabidopsis pattern recognition receptor EFR enhances fire blight resistance in apple. Horticulture Research, 8:204.
  • Kolodziej, Markus C; Singla, Jyoti; Sánchez-Martín, Javier; Zbinden, Helen; Šimková, Hana; Karafiátová, Miroslava; Doležel, Jaroslav; Gronnier, Julien; Poretti, Manuel; Glauser, Gaétan; Zhu, Wangsheng; Köster, Philipp; Zipfel, Cyril; Wicker, Thomas; Krattinger, Simon G; Keller, Beat (2021). A membrane-bound ankyrin repeat protein confers race-specific leaf rust disease resistance in wheat. Nature Communications, 12:956.
  • Rhodes, Jack; Yang, Huanjie; Moussu, Steven; Boutrot, Freddy; Santiago, Julia; Zipfel, Cyril (2021). Perception of a divergent family of phytocytokines by the Arabidopsis receptor kinase MIK2. Nature Communications, 12(1):705.
  • Abarca, Alicia; Franck, Christina Maria; Zipfel, Cyril (2021). Family-wide evaluation of RAPID ALKALINIZATION FACTOR peptides. Plant Physiology, 187(2):996-1010.
  • DeFalco, Thomas A; Zipfel, Cyril (2021). Molecular mechanisms of early plant pattern-triggered immune signaling (Corrections). Molecular Cell, 81(20):4346.
  • Schellenberger, Romain; Crouzet, Jérôme; Nickzad, Arvin; Shu, Lin-Jie; Kutschera, Alexander; Gerster, Tim; Borie, Nicolas; Dawid, Corinna; Cloutier, Maude; Villaume, Sandra; Dhondt-Cordelier, Sandrine; Hubert, Jane; Cordelier, Sylvain; Mazeyrat-Gourbeyre, Florence; Schmid, Christian; Ongena, Marc; Renault, Jean-Hugues; Haudrechy, Arnaud; Hofmann, Thomas; Baillieul, Fabienne; Clément, Christophe; Zipfel, Cyril; Gauthier, Charles; Déziel, Eric; Ranf, Stefanie; Dorey, Stéphan (2021). Bacterial rhamnolipids and their 3-hydroxyalkanoate precursors activate Arabidopsis innate immunity through two independent mechanisms. Proceedings of the National Academy of Sciences of the United States of America, 118(39):e2101366118.
  • Bender, Kyle W; Couto, Daniel; Kadota, Yasuhiro; Macho, Alberto P; Sklenar, Jan; Derbyshire, Paul; Bjornson, Marta; DeFalco, Thomas A; Petriello, Annalise; Font Farre, Maria; Schwessinger, Benjamin; Ntoukakis, Vardis; Stransfeld, Lena; Jones, Alexandra M E; Menke, Frank L H; Zipfel, Cyril (2021). Activation loop phosphorylaton of a non-RD receptor kinase initiates plant innate immune signaling. Proceedings of the National Academy of Sciences of the United States of America, 118(38):e2108242118.
  • DeFalco, Thomas A; Zipfel, Cyril (2021). Molecular mechanisms of early plant pattern-triggered immune signaling. Molecular Cell, 81(17):3449-3467.
  • Mühlenbeck, Henning; Bender, Kyle W; Zipfel, Cyril (2021). Importance of tyrosine phosphorylation for transmembrane signaling in plants. Biochemical Journal, 478(14):2759-2774.
  • Mitre, Letícia Kuster; Teixeira‐Silva, Natália Sousa; Rybak, Katarzyna; Magalhães, Diogo Maciel; de Souza‐Neto, Reinaldo Rodrigues; Robatzek, Silke; Zipfel, Cyril; de Souza, Alessandra Alves (2021). The Arabidopsis immune receptor EFR increases resistance to the bacterial pathogens Xanthomonas and Xylella in transgenic sweet orange. Plant Biotechnology Journal, 19(7):1294-1296.
  • Aubry, Sylvain; Christ, Bastien; Kräutler, Bernhard; Martinoia, Enrico; Thomas, Howard; Zipfel, Cyril (2021). An evergreen mind and a heart for the colors of fall. Journal of Experimental Botany, 72(13):4625-4633.
  • Bjornson, Marta; Zipfel, Cyril (2021). Plant immunity: Crosstalk between plant immune receptors. Current Biology, 31(12):R796-R798.
  • Bjornson, Marta; Pimprikar, Priya; Nürnberger, Thorsten; Zipfel, Cyril (2021). The transcriptional landscape of Arabidopsis thaliana pattern-triggered immunity. Nature Plants, 7(5):579-586.
  • Holmes, Danalyn R; Bredow, Melissa; Thor, Kathrin; Pascetta, Sydney A; Sementchoukova, Irina; Siegel, Kristen R; Zipfel, Cyril; Monaghan, Jacqueline (2021). A novel allele of the Arabidopsis thaliana MACPF protein CAD1 results in deregulated immune signaling. Genetics, 217(4):iyab022.
  • Sánchez-Martín, Javier; Widrig, Victoria; Herren, Gerhard; Wicker, Thomas; Zbinden, Helen; Gronnier, Julien; Spörri, Laurin; Praz, Coraline R; Heuberger, Matthias; Kolodziej, Markus C; Isaksson, Jonatan; Steuernagel, Burkhard; Karafiátová, Miroslava; Doležel, Jaroslav; Zipfel, Cyril; Keller, Beat (2021). Wheat Pm4 resistance to powdery mildew is controlled by alternative splice variants encoding chimeric proteins. Nature Plants, 7(3):327-341.

• 2020

  • Steinbrenner, Adam D; Muñoz-Amatriaín, Maria; Chaparro, Antonio F; Aguilar-Venegas, Jessica Montserrat; Lo, Sassoum; Okuda, Satohiro; Glauser, Gaetan; Dongiovanni, Julien; Shi, Da; Hall, Marlo; Crubaugh, Daniel; Holton, Nicholas; Zipfel, Cyril; Abagyan, Ruben; Turlings, Ted C J; Close, Timothy J; Huffaker, Alisa; Schmelz, Eric A (2020). A receptor-like protein mediates plant immune responses to herbivore-associated molecular patterns. Proceedings of the National Academy of Sciences of the United States of America, 117(49):31510-31518.
  • Bjornson, Marta; Kajala, Kaisa; Zipfel, Cyril; Ding, Pingtao (2020). Low-cost and high-throughput RNA-seq library preparation for illumina sequencing from plant tissue. Bio-protocol, 10(20):e3799.
  • Thor, Kathrin; Jiang, Shushu; Michard, Erwan; George, Jeoffrey; Scherzer, Sönke; Huang, Shouguang; Dindas, Julian; Derbyshire, Paul; Leitão, Nuno; DeFalco, Thomas A; Köster, Philipp; Hunter, Kerri; Kimura, Sachie; Gronnier, Julien; Stransfeld, Lena; Kadota, Yasuhiro; Bücherl, Christoph A; Charpentier, Myriam; Wrzaczek, Michael; MacLean, Daniel; Oldroyd, Giles E D; Menke, Frank L H; Roelfsema, M Rob G; Hedrich, Rainer; Feijó, José; Zipfel, Cyril (2020). The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity. Nature, 585(7826):569-573.
  • Cheval, Cécilia; Samwald, Sebastian; Johnston, Matthew G; de Keijzer, Jeroen; Breakspear, Andrew; Liu, Xiaokun; Bellandi, Annalisa; Kadota, Yasuhiro; Zipfel, Cyril; Faulkner, Christine (2020). Chitin perception in plasmodesmata characterizes submembrane immune-signaling specificity in plants. Proceedings of the National Academy of Sciences of the United States of America, 117(17):9621-9629.
  • Zhou, Yeling; Vroegop-Vos, Irene A; Van Dijken, Anja J H; Van der Does, Dieuwertje; Zipfel, Cyril; Pieterse, Corné M J; Van Wees, Saskia C M (2020). Carbonic anhydrases CA1 and CA4 function in atmospheric CO2-modulated disease resistance. Planta, 251:75.
  • Cheung, Alice Y; Qu, Li-Jia; Russinova, Eugenia; Zhao, Yunde; Zipfel, Cyril (2020). Update on Receptors and Signaling. Plant Physiology, 182(4):1527-1530.

• 2019

  • Wong, Jaslyn E M M; Nadzieja, Marcin; Madsen, Lene H; Bücherl, Christoph A; Dam, Svend; Sandal, Niels N; Couto, Daniel; Derbyshire, Paul; Uldum-Berentsen, Mette; Schroeder, Sina; Schwämmle, Veit; Nogueira, Fábio C S; Asmussen, Mette H; Thirup, Søren; Radutoiu, Simona; Blaise, Mickaël; Andersen, Kasper R; Menke, Frank L H; Zipfel, Cyril; Stougaard, Jens (2019). A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation. Proceedings of the National Academy of Sciences of the United States of America, 116(28):14339-14348.
  • Wan, Wei‐Lin; Zhang, Lisha; Pruitt, Rory; Zaidem, Maricris; Brugman, Rik; Ma, Xiyu; Krol, Elzbieta; Perraki, Artemis; Kilian, Joachim; Grossmann, Guido; Stahl, Mark; Shan, Libo; Zipfel, Cyril; van Kan, Jan A L; Hedrich, Rainer; Weigel, Detlef; Gust, Andrea A; Nürnberger, Thorsten (2019). Comparing Arabidopsis receptor kinase and receptor protein‐mediated immune signaling reveals BIK1‐dependent differences. New Phytologist, 221(4):2080-2095.
  • Pfeilmeier, Sebastian; George, Jeoffrey; Morel, Arry; Roy, Sonali; Smoker, Matthew; Stransfeld, Lena; Downie, J Allan; Peeters, Nemo; Malone, Jacob G; Zipfel, Cyril (2019). Expression of the Arabidopsis thaliana immune receptor EFR in Medicago truncatula reduces infection by a root pathogenic bacterium, but not nitrogen‐fixing rhizobial symbiosis. Plant Biotechnology Journal, 17(3):569-579.
  • Kadota, Yasuhiro; Liebrand, Thomas W H; Goto, Yukihisa; Sklenar, Jan; Derbyshire, Paul; Menke, Frank L H; Torres, Miguel-Angel; Molina, Antonio; Zipfel, Cyril; Coaker, Gitta; Shirasu, Ken (2019). Quantitative phosphoproteomic analysis reveals common regulatory mechanisms between effector- and PAMP-triggered immunity in plants. New Phytologist, 221:2160-2175.

• 2018

  • Engelsdorf, Timo; Gigli-Bisceglia, Nora; Veerabagu, Manikandan; McKenna, Joseph F; Vaahtera, Lauri; Augstein, Frauke; Van der Does, Dieuwertje; Zipfel, Cyril; Hamann, Thorsten (2018). The plant cell wall integrity maintenance and immune signaling systems cooperate to control stress responses inArabidopsis thaliana. Science Signaling, 11(536):eaao3070.
  • Bender, Kyle W; Zipfel, Cyril (2018). Plant G-protein activation: connecting to plant receptor kinases. Cell Research, 28(7):697-698.
  • Perraki, Artemis; Gronnier, Julien; Gouguet, Paul; Boudsocq, Marie; Deroubaix, Anne-Flore; Simon, Vincent; German-Retana, Sylvie; Legrand, Anthony; Habenstein, Birgit; Zipfel, Cyril; Bayer, Emmanuelle; Mongrand, Sébastien; Germain, Véronique (2018). REM1.3's phospho-status defines its plasma membrane nanodomain organization and activity in restricting PVX cell-to-cell movement. PLoS Pathogens, 14(11):e1007378.

• 2017

  • Stegmann, Martin; Zipfel, Cyril (2017). Complex regulation of plant sex by peptides. Science, 358(6370):1544-1545.
  • D’Ambrosio, Juan Martín; Couto, Daniel; Fabro, Georgina; Scuffi, Denise; Lamattina, Lorenzo; Munnik, Teun; Andersson, Mats X; Álvarez, María E; Zipfel, Cyril; Laxalt, Ana M (2017). Phospholipase C2 Affects MAMP-Triggered Immunity by Modulating ROS Production. Plant Physiology, 175(2):970-981.
  • Boschi, Federico; Schvartzman, Claudia; Murchio, Sara; Ferreira, Virginia; Siri, Maria I; Galván, Guillermo A; Smoker, Matthew; Stransfeld, Lena; Zipfel, Cyril; Vilaró, Francisco L; Dalla-Rizza, Marco (2017). Enhanced Bacterial Wilt Resistance in Potato Through Expression of Arabidopsis EFR and Introgression of Quantitative Resistance from Solanum commersonii. Frontiers in Plant Science, 8:1642.
  • Imkampe, Julia; Halter, Thierry; Huang, Shuhua; Schulze, Sarina; Mazzotta, Sara; Schmidt, Nikola; Manstretta, Raffaele; Postel, Sandra; Wierzba, Michael; Yang, Yong; van Dongen, Walter M A M; Stahl, Mark; Zipfel, Cyril; Goshe, Michael B; Clouse, Steven; de Vries, Sacco C; Tax, Frans; Wang, Xiaofeng; Kemmerling, Birgit (2017). The Arabidopsis Leucine-Rich Repeat Receptor Kinase BIR3 Negatively Regulates BAK1 Receptor Complex Formation and Stabilizes BAK1. Plant Cell, 29(9):2285-2303.
  • Boutrot, Freddy; Zipfel, Cyril (2017). Function, Discovery, and Exploitation of Plant Pattern Recognition Receptors for Broad-Spectrum Disease Resistance. Annual Review of Phytopathology, 55:257-286.
  • Singh, Vijayata; Perraki, Artemis; Kim, Sang Y; Shrivastava, Stuti; Lee, Jae H; Zhao, Youfu; Schwessinger, Benjamin; Oh, Man-Ho; Marshall-Colon, Amy; Zipfel, Cyril; Huber, Steven C (2017). Tyrosine-610 in the Receptor Kinase BAK1 Does Not Play a Major Role in Brassinosteroid Signaling or Innate Immunity. Frontiers in Plant Science, 8:1273.
  • Van der Does, Dieuwertje; Boutrot, Freddy; Engelsdorf, Timo; Rhodes, Jack; McKenna, Joseph F; Vernhettes, Samantha; Koevoets, Iko; Tintor, Nico; Veerabagu, Manikandan; Miedes, Eva; Segonzac, Cécile; Roux, Milena; Breda, Alice S; Hardtke, Christian S; Molina, Antonio; Rep, Martijn; Testerink, Christa; Mouille, Grégory; Höfte, Herman; Hamann, Thorsten; Zipfel, Cyril (2017). The Arabidopsis leucine-rich repeat receptor kinase MIK2/LRR-KISS connects cell wall integrity sensing, root growth and response to abiotic and bioticstresses. PLoS Genetics, 13(6):e1006832.
  • Mendy, Badou; Wang’ombe, Mary Wanjiku; Radakovic, Zoran S; Holbein, Julia; Ilyas, Muhammad; Chopra, Divykriti; Holton, Nick; Zipfel, Cyril; Grundler, Florian M W; Siddique, Shahid (2017). Arabidopsis leucine-rich repeat receptor–like kinase NILR1 is required for induction of innate immunity to parasitic nematodes. PLoS Pathogens, 13(4):e1006284.
  • Souza, Clarice de Azevedo; Li, Shundai; Lin, Andrew Z; Boutrot, Freddy; Grossmann, Guido; Zipfel, Cyril; Somerville, Shauna C (2017). Cellulose-Derived Oligomers Act as Damage-Associated Molecular Patterns and Trigger Defense-Like Responses. Plant Physiology, 173(4):2383-2398.
  • Zipfel, Cyril; Oldroyd, Giles E D (2017). Plant signalling in symbiosis and immunity. Nature, 543(7645):328-336.
  • Bender, Kyle W; Blackburn, R Kevin; Monaghan, Jacqueline; Derbyshire, Paul; Menke, Frank L H; Zipfel, Cyril; Goshe, Michael B; Zielinski, Raymond E; Huber, Steven C (2017). Autophosphorylation-based Calcium (Ca2+) Sensitivity Priming and Ca2+/Calmodulin Inhibition of Arabidopsis thaliana Ca2+-dependent Protein Kinase 28 (CPK28). Journal of Biological Chemistry, 292(10):3988-4002.
  • Bücherl, Christoph A; Jarsch, Iris K; Schudoma, Christian; Segonzac, Cécile; Mbengue, Malick; Robatzek, Silke; MacLean, Daniel; Ott, Thomas; Zipfel, Cyril (2017). Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains. eLife, 6:e25114.
  • Shubchynskyy, Volodymyr; Boniecka, Justyna; Schweighofer, Alois; Simulis, Justinas; Kvederaviciute, Kotryna; Stumpe, Michael; Mauch, Felix; Balazadeh, Salma; Mueller-Roeber, Bernd; Boutrot, Freddy; Zipfel, Cyril; Meskiene, Irute (2017). Protein phosphatase AP2C1 negatively regulates basal resistance and defense responses to Pseudomonas syringae. Journal of Experimental Botany, 68(5):1169-1183.
  • Stegmann, Martin; Monaghan, Jacqueline; Smakowska-Luzan, Elwira; Rovenich, Hanna; Lehner, Anita; Holton, Nicholas; Belkhadir, Youssef; Zipfel, Cyril (2017). The receptor kinase FER is a RALF-regulated scaffold controlling plant immune signaling. Science, 355(6322):287-289.

• 2016

  • Xin, Xiu-Fang; Nomura, Kinya; Aung, Kyaw; Velásquez, André C; Yao, Jian; Boutrot, Freddy; Chang, Jeff H; Zipfel, Cyril; He, Sheng Yang (2016). Bacteria establish an aqueous living space in plants crucial for virulence. Nature, 539(7630):524-529.
  • Couto, Daniel; Zipfel, Cyril (2016). Regulation of pattern recognition receptor signalling in plants. Nature Reviews. Immunology, 16(9):537-552.
  • Magalhães, Diogo M; Scholte, Larissa L S; Silva, Nicholas V; Oliveira, Guilherme C; Zipfel, Cyril; Takita, Marco A; de Souza, Alessandra Alves (2016). LRR-RLK family from two Citrus species: genome-wide identification and evolutionary aspects. BMC Genomics, 17(1):623.
  • Couto, Daniel; Niebergall, Roda; Liang, Xiangxiu; Bücherl, Christoph A; Sklenar, Jan; Macho, Alberto P; Ntoukakis, Vardis; Derbyshire, Paul; Altenbach, Denise; Maclean, Dan; Robatzek, Silke; Uhrig, Joachim; Menke, Frank; Zhou, Jian-Min; Zipfel, Cyril (2016). The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1. PLoS Pathogens, 12(8):e1005811.
  • Hegenauer, Volker; Fürst, Ursula; Kaiser, Bettina; Smoker, Matthew; Zipfel, Cyril; Felix, Georg; Stahl, Mark; Albert, Markus (2016). Detection of the plant parasite Cuscuta reflexa by a tomato cell surface receptor. Science, 353(6298):478-481.
  • Yeh, Yu-Hung; Panzeri, Dario; Kadota, Yasuhiro; Huang, Yi-Chun; Huang, Pin-Yao; Tao, Chia-Nan; Roux, Milena; Chien, Hsiao-Chiao; Chin, Tzu-Chuan; Chu, Po-Wei; Zipfel, Cyril; Zimmerli, Laurent (2016). The Arabidopsis Malectin-Like/LRR-RLK IOS1 is Critical for BAK1-Dependent and BAK1-Independent Pattern-Triggered Immunity. Plant Cell, 28(7):1701-1721.
  • Kamoun, Sophien; Zipfel, Cyril (2016). Fungal pathogenesis: Host modulation every which way. Nature Microbiology, 1(6):16075.
  • Saur, Isabel M L; Kadota, Yasuhiro; Sklenar, Jan; Holton, Nicholas J; Smakowska, Elwira; Belkhadir, Youssef; Zipfel, Cyril; Rathjen, John P (2016). NbCSPR underlies age-dependent immune responses to bacterial cold shock protein in Nicotiana benthamiana. Proceedings of the National Academy of Sciences of the United States of America, 113(12):3389-3394.
  • Kamoun, Sophien; Zipfel, Cyril (2016). Class uncorrected errors as misconduct. Nature, 531(7593):173.
  • Morales, Jorge; Kadota, Yasuhiro; Zipfel, Cyril; Molina, Antonio; Torres, Miguel-Angel (2016). The Arabidopsis NADPH oxidases RbohD and RbohF display differential expression patterns and contributions during plant immunity. Journal of Experimental Botany, 67(6):1663-1676.
  • Yue, Kun; Sandal, Priyanka; Williams, Elisabeth L; Murphy, Evan; Stes, Elisabeth; Nikonorova, Natalia; Ramakrishna, Priya; Czyzewicz, Nathan; Montero-Morales, Laura; Kumpf, Robert; Lin, Zhefeng; van de Cotte, Brigitte; Iqbal, Mudassar; Van Bel, Michiel; Van De Slijke, Eveline; Meyer, Matthew R; Gadeyne, Astrid; Zipfel, Cyril; De Jaeger, Geert; Van Montagu, Marc; Van Damme, Daniël; Gevaert, Kris; Rao, A Gururaj; Beeckman, Tom; De Smet, Ive (2016). PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root. Proceedings of the National Academy of Sciences of the United States of America, 113(5):1447-1452.
  • Trempel, Fabian; Kajiura, Hiroyuki; Ranf, Stefanie; Grimmer, Julia; Westphal, Lore; Zipfel, Cyril; Scheel, Dierk; Fujiyama, Kazuhito; Lee, Justin (2016). Altered glycosylation of exported proteins, including surface immune receptors, compromises calcium and downstream signaling responses to microbe-associated molecular patterns in Arabidopsis thaliana. BMC Plant Biology, 16:31.
  • Kadota, Yasuhiro; Macho, Alberto P; Zipfel, Cyril (2016). Immunoprecipitation of Plasma Membrane Receptor-Like Kinases for Identification of Phosphorylation Sites and Associated Proteins. In: Botella, Miguel A; Botella, Jose. Plant signal transduction. New York: Springer, 133-144.

• 2015

  • Jiménez-Góngora, Tamara; Kim, Seong-Ki; Lozano-Durán, Rosa; Zipfel, Cyril (2015). Flg22-Triggered Immunity Negatively Regulates Key BR Biosynthetic Genes. Frontiers in Plant Science, 6:981.
  • Gou, Mingyue; Zhang, Zemin; Zhang, Ning; Huang, Quansheng; Monaghan, Jacqueline; Yang, Huijun; Shi, Zhenying; Zipfel, Cyril; Hua, Jian (2015). Opposing effects on two phases of defense responses from concerted actions of HSC70 and BON1 in Arabidopsis. Plant Physiology, 169(3):2304-2323.
  • Patron, Nicola J; Orzaez, Diego; Marillonnet, Sylvestre; Warzecha, Heribert; Matthewman, Colette; Youles, Mark; Raitskin, Oleg; Leveau, Aymeric; Farré, Gemma; Rogers, Christian; Smith, Alison; Hibberd, Julian; Webb, Alex A R; Locke, James; Schornack, Sebastian; Ajioka, Jim; Baulcombe, David C; Zipfel, Cyril; Kamoun, Sophien; Jones, Jonathan D G; Kuhn, Hannah; Robatzek, Silke; Van Esse, H Peter; Sanders, Dale; Oldroyd, Giles; Martin, Cathie; Field, Rob; O'Connor, Sarah; Fox, Samantha; Wulff, Brande; et al (2015). Standards for plant synthetic biology: a common syntax for exchange of DNA parts. New Phytologist, 208(1):13-19.
  • Rickett, Lydia M; Pullen, Nick; Hartley, Matthew; Zipfel, Cyril; Kamoun, Sophien; Baranyi, József; Morris, Richard J (2015). Incorporating prior knowledge improves detection of differences in bacterial growth rate. BMC Systems Biology, 9:60.
  • Kadota, Yasuhiro; Shirasu, Ken; Zipfel, Cyril (2015). Regulation of the NADPH Oxidase RBOHD During Plant Immunity. Plant & Cell Physiology, 56(8):1472-1480.
  • Monaghan, Jacqueline; Matschi, Susanne; Romeis, Tina; Zipfel, Cyril (2015). The calcium-dependent protein kinase CPK28 negatively regulates the BIK1-mediated PAMP-induced calcium burst. Plant signaling & behavior, 10(5):e1018497.
  • Macho, Alberto P; Lozano-Durán, Rosa; Zipfel, Cyril (2015). Importance of tyrosine phosphorylation in receptor kinase complexes. Trends in Plant Science, 20(5):269-272.
  • Couto, Daniel; Stransfeld, Lena; Arruabarrena, Ana; Zipfel, Cyril; Lozano-Durán, Rosa (2015). Broad application of a simple and affordable protocol for isolating plant RNA. BMC Research Notes, 8(1):154.
  • Schoonbeek, Henk‐jan; Wang, Hsi‐Hua; Stefanato, Francesca L; Craze, Melanie; Bowden, Sarah; Wallington, Emma; Zipfel, Cyril; Ridout, Christopher J (2015). Arabidopsis EF‐Tu receptor enhances bacterial disease resistance in transgenic wheat. New Phytologist, 206(2):606-613.
  • Schwessinger, Benjamin; Bahar, Ofir; Thomas, Nicolas; Holton, Nicolas; Nekrasov, Vladimir; Ruan, Deling; Canlas, Patrick E; Daudi, Arsalan; Petzold, Christopher J; Singan, Vasanth R; Kuo, Rita; Chovatia, Mansi; Daum, Christopher; Heazlewood, Joshua L; Zipfel, Cyril; Ronald, Pamela C (2015). Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses. PLoS Pathogens, 11(3):e1004809.
  • Macho, Alberto P; Zipfel, Cyril (2015). Targeting of plant pattern recognition receptor-triggered immunity by bacterial type-III secretion system effectors. Current Opinion in Microbiology, 23:14-22.
  • Holton, Nicholas; Nekrasov, Vladimir; Ronald, Pamela C; Zipfel, Cyril (2015). The Phylogenetically-Related Pattern Recognition Receptors EFR and XA21 Recruit Similar Immune Signaling Components in Monocots and Dicots. PLoS Pathogens, 11(1):e1004602.
  • Lozano-Durán, Rosa; Zipfel, Cyril (2015). Trade-off between growth and immunity: role of brassinosteroids. Trends in Plant Science, 20(1):12-19.

• 2014

  • Etherington, Graham J; Monaghan, Jacqueline; Zipfel, Cyril; Maclean, Dan (2014). Mapping mutations in plant genomes with the user-friendly web application CandiSNP. Plant Methods, 10(1):41.
  • Monaghan, Jacqueline; Matschi, Susanne; Shorinola, Oluwaseyi; Rovenich, Hanna; Matei, Alexandra; Segonzac, Cécile; Malinovsky, Frederikke Gro; Rathjen, John P; Maclean, Dan; Romeis, Tina; Zipfel, Cyril (2014). The Calcium-Dependent Protein Kinase CPK28 Buffers Plant Immunity and Regulates BIK1 Turnover. Cell Host & Microbe, 16(5):605-615.
  • Segonzac, Cécile; Macho, Alberto P; Sanmartín, Maite; Ntoukakis, Vardis; Sánchez‐Serrano, José Juan; Zipfel, Cyril (2014). Negative control of BAK1 by protein phosphatase 2A during plant innate immunity. The EMBO Journal, 33(18):2069-2079.
  • Macho, Alberto P; Zipfel, Cyril (2014). Plant PRRs and the Activation of Innate Immune Signaling. Molecular Cell, 54(2):263-272.
  • Kadota, Yasuhiro; Sklenar, Jan; Derbyshire, Paul; Stransfeld, Lena; Asai, Shuta; Ntoukakis, Vardis; Jones, Jonathan DG; Shirasu, Ken; Menke, Frank; Jones, Alexandra; Zipfel, Cyril (2014). Direct Regulation of the NADPH Oxidase RBOHD by the PRR-Associated Kinase BIK1 during Plant Immunity. Molecular Cell, 54(1):43-55.
  • Macho, Alberto P; Schwessinger, Benjamin; Ntoukakis, Vardis; Brutus, Alexandre; Segonzac, Cécile; Roy, Sonali; Kadota, Yasuhiro; Oh, Man-Ho; Sklenar, Jan; Derbyshire, Paul; Lozano-Durán, Rosa; Malinovsky, Frederikke Gro; Monaghan, Jacqueline; Menke, Frank L H; Huber, Steven C; He, Sheng Yang; Zipfel, Cyril (2014). A Bacterial Tyrosine Phosphatase Inhibits Plant Pattern Recognition Receptor Activation. Science, 343(6178):1509-1512.
  • Trost, Gerda; Vi, Son Lang; Czesnick, Hjördis; Lange, Peggy; Holton, Nick; Giavalisco, Patrick; Zipfel, Cyril; Kappel, Christian; Lenhard, Michael (2014). Arabidopsis poly(A) polymerase PAPS1 limits founder-cell recruitment to organ primordia and suppresses the salicylic acid-independent immune response downstream of EDS1/PAD4. The Plant Journal, 77(5):688-699.
  • Lloyd, Simon R; Schoonbeek, Henk-jan; Trick, Martin; Zipfel, Cyril; Ridout, Christopher J (2014). Methods to Study PAMP-Triggered Immunity in Brassica Species. Molecular Plant-Microbe Interactions, 27(3):286-295.
  • Trdá, Lucie; Fernandez, Olivier; Boutrot, Freddy; Héloir, Marie‐Claire; Kelloniemi, Jani; Daire, Xavier; Adrian, Marielle; Clément, Christophe; Zipfel, Cyril; Dorey, Stéphan; Poinssot, Benoit (2014). The grapevine flagellin receptor VvFLS2 differentially recognizes flagellin-derived epitopes from the endophytic growth-promoting bacterium Burkholderia phytofirmans and plant pathogenic bacteria. New Phytologist, 201(4):1371-1384.
  • Malinovsky, Frederikke Gro; Batoux, Martine; Schwessinger, Benjamin; Youn, Ji Hyun; Stransfeld, Lena; Win, Joe; Kim, Seong-Ki; Zipfel, Cyril (2014). Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression2 interacting with increased leaf inclination1 binding bHLH1. Plant Physiology, 164(3):1443-1455.

• 2013

  • Lozano-Durán, Rosa; Macho, Alberto P; Boutrot, Freddy; Segonzac, Cécile; Somssich, Imre E; Zipfel, Cyril (2013). The transcriptional regulator BZR1 mediates trade-off between plant innate immunity and growth. eLife, 2:e00983.
  • Zhang, Weiguo; Fraiture, Malou; Kolb, Dagmar; Löffelhardt, Birgit; Desaki, Yoshitake; Boutrot, Freddy F G; Tör, Mahmut; Zipfel, Cyril; Gust, Andrea A; Brunner, Frédéric (2013). Arabidopsis receptor-like protein30 and receptor-like kinase suppressor of BIR1-1/EVERSHED mediate innate immunity to necrotrophic fungi. Plant Cell, 25(10):4227-4241.
  • Asai, Shuta; Ichikawa, Tatsushi; Nomura, Hironari; Kobayashi, Michie; Kamiyoshihara, Yusuke; Mori, Hitoshi; Kadota, Yasuhiro; Zipfel, Cyril; Jones, Jonathan D G; Yoshioka, Hirofumi (2013). The Variable Domain of a Plant Calcium-dependent Protein Kinase (CDPK) Confers Subcellular Localization and Substrate Recognition for NADPH Oxidase. Journal of Biological Chemistry, 288(20):14332-14340.
  • Farid, Akhlaq; Gro Malinovsky, Frederikke; Veit, Christiane; Schoberer, Jennifer; Zipfel, Cyril; Strasser, Richard (2013). Specialized Roles of the Conserved Subunit OST3/6 of the Oligosaccharyltransferase Complex in Innate Immunity and Tolerance to Abiotic Stresses. Plant Physiology, 162(1):24-38.
  • Zipfel, Cyril (2013). Combined roles of ethylene and endogenous peptides in regulating plant immunity and growth. Proceedings of the National Academy of Sciences of the United States of America, 110(15):5748-5749.
  • Nicaise, Valerie; Joe, Anna; Jeong, Byeong-ryool; Korneli, Christin; Boutrot, Freddy; Westedt, Isa; Staiger, Dorothee; Alfano, James R; Zipfel, Cyril (2013). Pseudomonas HopU1 modulates plant immune receptor levels by blocking the interaction of their mRNAs with GRP7. The EMBO Journal, 32(5):701-712.

• 2012

  • Win, J; Chaparro-Garcia, A; Belhaj, K; Saunders, D G O; Yoshida, K; Dong, S; Schornack, S; Zipfel, Cyril; Robatzek, S; Hogenhout, S A; Kamoun, Sophien (2012). Effector Biology of Plant-Associated Organisms: Concepts and Perspectives. Cold Spring Harbor Symposia on Quantitative Biology, 77:235-247.
  • Monaghan, Jacqueline; Zipfel, Cyril (2012). Plant pattern recognition receptor complexes at the plasma membrane. Current Opinion in Plant Biology, 15(4):349-357.
  • Macho, Alberto P; Boutrot, Freddy; Rathjen, John P; Zipfel, Cyril (2012). Aspartate Oxidase Plays an Important Role in Arabidopsis Stomatal Immunity. Plant Physiology, 159(4):1845-1856.
  • Segonzac, Cécile; Nimchuk, Zachary L; Beck, Martina; Tarr, Paul T; Robatzek, Silke; Meyerowitz, Elliot M; Zipfel, Cyril (2012). The Shoot Apical Meristem Regulatory Peptide CLV3 Does Not Activate Innate Immunity. Plant Cell, 24(8):3186-3192.
  • Roux, Milena; Zipfel, Cyril (2012). Receptor Kinase Interactions: Complexity of Signalling. In: Tax, Frans; Kemmerling, Birgit. Receptor-like kinases in plants : from development to defense. Berlin: Springer, 145-172.
  • Marshall, Alex; Aalen, Reidunn B; Audenaert, Dominique; Beeckman, Tom; Broadley, Martin R; Butenko, Melinka A; Caño-Delgado, Ana I; de Vries, Sacco; Dresselhaus, Thomas; Felix, Georg; Graham, Neil S; Foulkes, John; Granier, Christine; Greb, Thomas; Grossniklaus, Ueli; Hammond, John P; Heidstra, Renze; Hodgman, Charlie; Hothorn, Michael; Inzé, Dirk; Ostergaard, Lars; Russinova, Eugenia; Simon, Rüdiger; Skirycz, Aleksandra; Stahl, Yvonne; Zipfel, Cyril; De Smet, Ive (2012). Tackling drought stress: receptor-like kinases present new approaches. Plant Cell, 24(6):2262-2278.

• 2011

  • Ntoukakis, Vardis; Schwessinger, Benjamin; Segonzac, Cécile; Zipfel, Cyril (2011). Cautionary Notes on the Use of C-Terminal BAK1 Fusion Proteins for Functional Studies. Plant Cell, 23(11):3871-3878.
  • Albrecht, Catherine; Boutrot, Freddy; Segonzac, Cécile; Schwessinger, Benjamin; Gimenez-Ibanez, Selena; Chinchilla, Delphine; Rathjen, John P; de Vries, Sacco C; Zipfel, Cyril (2011). Brassinosteroids inhibit pathogen-associated molecular pattern–triggered immune signaling independent of the receptor kinase BAK1. Proceedings of the National Academy of Sciences of the United States of America, 109(1):303-308.
  • Denness, Lucinda; McKenna, Joseph Francis; Segonzac, Cécile; Wormit, Alexandra; Madhou, Priya; Bennett, Mark; Mansfield, John; Zipfel, Cyril; Hamann, Thorsten (2011). Cell Wall Damage-Induced Lignin Biosynthesis Is Regulated by a Reactive Oxygen Species- and Jasmonic Acid-Dependent Process in Arabidopsis. Plant Physiology, 156(3):1364-1374.
  • Segonzac, Cécile; Feike, Doreen; Gimenez-Ibanez, Selena; Hann, Dagmar R; Zipfel, Cyril; Rathjen, John P (2011). Hierarchy and Roles of Pathogen-Associated Molecular Pattern-Induced Responses in Nicotiana benthamiana. Plant Physiology, 156(2):687-699.
  • Roux, Milena; Schwessinger, Benjamin; Albrecht, Catherine; Chinchilla, Delphine; Jones, Alexandra; Holton, Nick; Malinovsky, Frederikke Gro; Tör, Mahmut; de Vries, Sacco; Zipfel, Cyril (2011). The Arabidopsis Leucine-Rich Repeat Receptor–Like Kinases BAK1/SERK3 and BKK1/SERK4 Are Required for Innate Immunity to Hemibiotrophic and Biotrophic Pathogens. Plant Cell, 23(6):2440-2455.
  • Schwessinger, Benjamin; Roux, Milena; Kadota, Yasuhiro; Ntoukakis, Vardis; Sklenar, Jan; Jones, Alexandra; Zipfel, Cyril (2011). Phosphorylation-Dependent Differential Regulation of Plant Growth, Cell Death, and Innate Immunity by the Regulatory Receptor-Like Kinase BAK1. PLoS Genetics, 7(4):e1002046.
  • Liebminger, Eva; Veit, Christiane; Pabst, Martin; Batoux, Martine; Zipfel, Cyril; Altmann, Friedrich; Mach, Lukas; Strasser, Richard (2011). β-N-Acetylhexosaminidases HEXO1 and HEXO3 Are Responsible for the Formation of Paucimannosidic N-Glycans in Arabidopsis thaliana. Journal of Biological Chemistry, 286(12):10793-10802.
  • Segonzac, Cécile; Zipfel, Cyril (2011). Activation of plant pattern-recognition receptors by bacteria. Current Opinion in Microbiology, 14(1):54-61.
  • Chaparro-Garcia, Angela; Wilkinson, Rachael C; Gimenez-Ibanez, Selena; Findlay, Kim; Coffey, Michael D; Zipfel, Cyril; Rathjen, John P; Kamoun, Sophien; Schornack, Sebastian (2011). The Receptor-Like Kinase SERK3/BAK1 Is Required for Basal Resistance against the Late Blight Pathogen Phytophthora infestans in Nicotiana benthamiana. PLoS ONE, 6(1):e16608.

• 2010

  • Zipfel, Cyril; Robatzek, Silke (2010). Pathogen-Associated Molecular Pattern-Triggered Immunity: Veni, Vidi…?. Plant Physiology, 154(2):551-554.
  • Malinovsky, Frederikke G; Brodersen, Peter; Fiil, Berthe Katrine; McKinney, Lea Vig; Thorgrimsen, Stephan; Beck, Martina; Nielsen, H Bjørn; Pietra, Stefano; Zipfel, Cyril; Robatzek, Silke; Petersen, Morten; Hofius, Daniel; Mundy, John (2010). Lazarus1, a DUF300 Protein, Contributes to Programmed Cell Death Associated with Arabidopsis acd11 and the Hypersensitive Response. PLoS ONE, 5(9):e12586.
  • Boutrot, Freddy; Segonzac, Cécile; Chang, Katherine N; Qiao, Hong; Ecker, Joseph R; Zipfel, Cyril; Rathjen, John P (2010). Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1. Proceedings of the National Academy of Sciences of the United States of America, 107(32):14502-14507.
  • Lacombe, Séverine; Rougon-Cardoso, Alejandra; Sherwood, Emma; Peeters, Nemo; Dahlbeck, Douglas; van Esse, H Peter; Smoker, Matthew; Rallapalli, Ghanasyam; Thomma, Bart P H J; Staskawicz, Brian; Jones, Jonathan D G; Zipfel, Cyril (2010). Interfamily transfer of a plant pattern-recognition receptor confers broad-spectrum bacterial resistance. Nature Biotechnology, 28(4):365-369.

• 2009

  • Nekrasov, Vladimir; Li, Jing; Batoux, Martine; Roux, Milena; Chu, Zhao-Hui; Lacombe, Severine; Rougon, Alejandra; Bittel, Pascal; Kiss-Papp, Marta; Chinchilla, Delphine; van Esse, H Peter; Jorda, Lucia; Schwessinger, Benjamin; Nicaise, Valerie; Thomma, Bart P H J; Molina, Antonio; Jones, Jonathan D G; Zipfel, Cyril (2009). Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity. The EMBO Journal, 28(21):3428-3438.
  • Zipfel, Cyril (2009). Early molecular events in PAMP-triggered immunity. Current Opinion in Plant Biology, 12(4):414-420.
  • Nicaise, Valerie; Roux, Milena; Zipfel, Cyril (2009). Recent Advances in PAMP-Triggered Immunity against Bacteria: Pattern Recognition Receptors Watch over and Raise the Alarm. Plant Physiology, 150(4):1638-1647.

• 2008

  • Schwessinger, Benjamin; Zipfel, Cyril (2008). News from the frontline: recent insights into PAMP-triggered immunity in plants. Current Opinion in Plant Biology, 11(4):389-395.
  • Wang, Guodong; Ellendorff, Ursula; Kemp, Ben; Mansfield, John W; Forsyth, Alec; Mitchell, Kathy; Bastas, Kubilay; Liu, Chun-Ming; Woods-Tör, Alison; Zipfel, Cyril; de Wit, Pierre J G M; Jones, Jonathan D G; Tör, Mahmut; Thomma, Bart P H J (2008). A Genome-Wide Functional Investigation into the Roles of Receptor-Like Proteins in Arabidopsis. Plant Physiology, 147(2):503-517.
  • Zipfel, Cyril; Rathjen, John P (2008). Plant Immunity: AvrPto Targets the Frontline. Current Biology, 18(5):R218-R220.
  • Zipfel, Cyril (2008). Pattern-recognition receptors in plant innate immunity. Current Opinion in Immunology, 20(1):10-16.

• 2007

  • Chinchilla, Delphine; Zipfel, Cyril; Robatzek, Silke; Kemmerling, Birgit; Nürnberger, Thorsten; Jones, Jonathan D G; Felix, Georg; Boller, Thomas (2007). A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence. Nature, 448(7152):497-500.

• 2006

  • Molinier, Jean; Ries, Gerhard; Zipfel, Cyril; Hohn, Barbara (2006). Transgeneration memory of stress in plants. Nature, 442(7106):1046-1049.
  • Zipfel, Cyril; Kunze, Gernot; Chinchilla, Delphine; Caniard, Anne; Jones, Jonathan D G; Boller, Thomas; Felix, Georg (2006). Perception of the Bacterial PAMP EF-Tu by the Receptor EFR Restricts Agrobacterium-Mediated Transformation. Cell, 125(4):749-760.

• 2005

  • Zipfel, Cyril; Felix, Georg (2005). Plants and animals: a different taste for microbes?. Current Opinion in Plant Biology, 8(4):353-360.

• 2004

  • Kunze, Gernot; Zipfel, Cyril; Robatzek, Silke; Niehaus, Karsten; Boller, Thomas; Felix, Georg (2004). The N Terminus of Bacterial Elongation Factor Tu Elicits Innate Immunity in Arabidopsis Plants. Plant Cell, 16(12):3496-3507.
  • Navarro, Lionel; Zipfel, Cyril; Rowland, Owen; Keller, Ingo; Robatzek, Silke; Boller, Thomas; Jones, Jonathan D G (2004). The Transcriptional Innate Immune Response to flg22. Interplay and Overlap with Avr Gene-Dependent Defense Responses and Bacterial Pathogenesis. Plant Physiology, 135(2):1113-1128.
  • Zipfel, Cyril; Robatzek, Silke; Navarro, Lionel; Oakeley, Edward J; Jones, Jonathan D G; Felix, Georg; Boller, Thomas (2004). Bacterial disease resistance in Arabidopsis through flagellin perception. Nature, 428(6984):764-767.